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Filtering by: Creator Holloway, James Lee Peer Reviewed No

Walking tree heuristics for biological string alignment, gene location, and phylogenies

Creator:

Oregon State University. Dept. of Computer Science, Cull, Paul, 1943-, Holloway, James Lee, and Cavener, Jeffrey Douglas

Abstract:

Basic biological information is stored in strings of nucleic acids (DNA, RNA) or amino acids (proteins). Teasing out the meaning of these strings is a central problem of modern biology. Matching and aligning strings brings out their shared characteristics. Although string matching is well-understood in the edit-distance model, biological strings...

Resource Type:

Research Paper
Algorithms for string matching with applications in molecular biology

Creator:

Holloway, James Lee

Abstract:

As the volume of genetic sequence data increases due to improved sequencing techniques and increased interest, the computational tools available to analyze the data are becoming inadequate. This thesis seeks to improve a few of the computational methods available to access and analyze data in the genetic sequence databases. The...

Resource Type:

Dissertation