The Tillamook and Kilchis subbasins of the Tillamook Bay watershed (Oregon Coast Range) have differences in geology and land use history and, therefore, varied environmental conditions that could affect fish assemblages. Fifty-two randomly selected wadeable stream reaches in these two subbasins were surveyed for stream habitat and fish assemblage composition...
Resident bull trout (Salvelinus confluentus) may be particularly vulnerable to human related disturbance, however very few studies have focused on resident bull trout populations. The abundance of bull trout is one measure of the strength and potential for persistence of a population. Habitat characteristics may influence resident bull trout abundance...
The Middle Fork John Day River is composed of low gradient, alluvial valley
segments separated by constrained, canyon-like reaches, and has a history of multiple
land-uses. These factors can alter the physical and biological structure of streams, and
disrupt the longitudinal river continuum. I examined habitat, fish, macroinvertebrates,
and primary...
Sympatric steelhead and resident rainbow trout (Oncorhynchus mykiss) are known
to exist in many rivers throughout the Pacific Rim. Whether sympatric steelhead and
resident rainbow trout are polymorphisms within a single gene pool or two reproductively
isolated populations has significant implications concerning the study and conservation of
this polytypic species....
The composition and distribution of fish assemblages was examined in a
floodplain lake system in the Amazon basin. Quantitative samples were
collected during the 1992-1993 flooding season at Marchantaria Island, Solimoes
River. A total of 25,819 specimens representing 8 orders, 30 families, 101
genera and 139 species of fish were...
Redband trout (Oncorhynchus mykiss gairdneri) are found over a wide range of environmental conditions and are known for their variability in life history traits among watersheds or even within streams. Life history traits and population structure of these trout can be influenced by a variety of anthropogenic changes including habitat...
The extent of biological invasions, their role on the feeding of
native fishes and their impact on community stability were
investigated in Alsea Bay and Yaquina Bay, two estuaries on the
central Oregon coast, USA. Most nonindigenous species (NIS)
introduced in these intermediately invaded estuaries are
considered byproducts of culturing...
Processes of metamorphosis, settlement, and growth were examined in Pacific sanddab
using field studies and otolith microstructure. This flatfish transforms at large sizes, has a
gradual metamorphosis, and settles to a nursery on the middle continental shelf. Eye migration
takes 3 months and "metamorphosis proper" which begins after completion of...
The minnow genus Siphateles is distributed throughout the Great Basin and adjacent drainages of western North America. Three species are currently recognized in the genus: S. alvordensis, Alvord chub, S. boraxobius, Borax Lake chub, and S. bicolor, the tui chub. S. bicolor has long been recognized as a widespread species...
In the summers of 1998 and 1999, aquatic invertebrate and plant communities were sampled from nineteen springs in the Warner Basin of southeastern Oregon. Across the landscape, these springs exhibited a broad range in water temperature (5-24°C), pH, conductivity, elevation, and gradient. Within a particular spring, water temperature and chemistry...
One of the greatest threats to native bull trout Salvelinus confluentus populations is the presence of non-native brook trout S. fontinalis. This study, conducted in two second-order Eastern Oregon streams, investigates the effect of brook trout on the feeding behavior arid diet of bull trout. Feeding behavior, microhabitat use, and...
Fishery dependent data--length distributions, sex ratios, maturity schedules, and species composition of landed catches--are necessary for stock assessments. These data are currently collected by state port biologists using a sampling design that randomly selects samples from a small percentage of a very large target population. Sampling programs may need to...
The development of assays for stress in marine fishes is vital for studying the impacts of bycatch in fisheries and for determining the health of fish being cultured or used in research. This research developed behavioral and physiological assays for stress in juvenile sablefish, Anoplopoma fimbria, a species that comprises...
Stress, including extreme or rapidly changing temperatures, are known to have deleterious effects on fish health and physiology. This thesis examines the combined effects of elevated acclimation temperature and acute handling stress on the number of antibody producing cells, plasma lysozyme concentrations, and the number of pronephric leukocytes in juvenile...
Sex steroids, follicle stimulating hormone (FSH),
luteinizing hormone (LH) and gonadotropin releasing hormone
(GnRH) were measured in monosex and mixed sex populations of
rainbow trout during early development. Steroids declined
following fertilization, increased at hatch, then fell and
remained constant thereafter. Trends toward differences in
steroids between males and females...
A series of experiments with Aeromonas salmonicida and infectious
hematopoietic necrosis virus (IHNV) were carried out to determine dynamics of the
spread of infection in chinook salmon (1.2-1.98g) and rainbow trout (1.2-3.1g). It was
found in experiments with A. salmonicida that fish infected by bath immersion became
infectious at 4...
Sex differentiation in fish is a labile process that allows sex inversion in several species. The inherent capacity of fish germ cells to differentiate into oocytes or spermatocytes constitutes a key factor allowing for functional sex inversion. This thesis set out to determine the mechanism involved in steroid-induced sex differentiation...
Co-management is considered an alternative approach to fisheries management,
however, not all co-managed fisheries have been successful. Most studies discussing the
success and failure of co-management have emphasized economic and social attributes of
success and failure, such as fishery rights and institutional arrangements. The effect on
co-management of biological characteristics,...
Pacific lampreys (Lampetra tridentata) have declined in abundance in the Columbia River Basin. Although, the reasons for the decline are unclear, we suggest that development of hydroelectric dams and habitat alterations in tributaries as the main causes. The available knowledge of life history of Pacific lampreys and status from dam...
Response of aquatic vertebrates to increased pool habitat complexity due to abundance of large wood was evaluated experimentally in three streams in the Cascade Mountains of Oregon. No difference in aquatic vertebrate density was detected among treatments, though there was a trend of increasing aquatic vertebrate density with increasing large...
Effects of spray-dried algae, Schizochytrium sp. and Haematococcus pluvialis, on growth and survival of Manila clam, Tapes philippinarum, spat were determined. Results of the present study showed that these two different spray-dried diets supported clam growth when added as supplements to rations of a mixed diet of the live algae...
This work sets forth a reformulation of Levins' loop analysis for the qualitative modeling of complex dynamical systems. Relationships between members of ecological communities can be analyzed through a qualitatively specified community matrix, whereby +1, -1, or 0 represent effects of one species upon another. A contribution is made to...
Conceptually, the dynamics of wood in streams can be viewed in terms of input and in-channel processes. Input processes are associated with both the riparian (tree fall, bank cutting, windthrow) and upslope forests (mass failures). In-channel processes include log breakage, movement, and decomposition. A mechanistic view of these processes is...
Organic matter dynamics in riparian ecosystems are largely driven by interactions among hydrology, soil, and vegetation. In two riparian meadows, northeast Oregon, I examined the hypothesis that vegetation and soil characteristics in three plant communities - defined as wet, moist, and dry meadow - were strongly influenced by hydrological and...
Research on the distribution of juvenile salmonids in streams has been dominated by studies examining small areas over short periods. However, information relevant to freshwater influences on population persistence is likely to derive from longer-term, multi-scale studies. Relationships were examined among juvenile anadromous salmonids, their freshwater habitat, and landscape characteristics...
Seasonally, in 1998 and 1999, I examined spatial and temporal variation in fish assemblages of agricultural, forested, and acid mine drainage tributaries within the Wayne National Forest (WNF) in southern Ohio. Land use and natural disturbance explained patterns in stream fish assemblages. Creek chub and green sunfish were present in...
Environmental factors such as chemical contamination can have immunomodulatory effects on the immune response of fish and may be contributing to the decline in salmonid populations by augmenting disease susceptibility. Xenobiotics can interfere with the immune system at several levels of complexity, and different immune cells and processes have variable...
Stock assessments for many U.S. Pacific coast groundfish stocks are developed using the catch-at-age method known as Stock Synthesis. In this work a simulation package was developed and used to evaluate the sensitivity of the Stock Synthesis program. More specifically, the evaluation focused on the impacts of input data errors...
The purpose of this research was to explore the impact of finfish bycatch on the ocean shrimp Pandalus jordani fishery using two methods. One method looked at the breakage of the shrimp by finfish bycatch in the nets. The other looked at the impact of bycatch on fishing decisions. At-sea...
Discrete coldwater patches within warm streams provide potential thermal refuge for coldwater fishes during periods of heat stress. This analysis focused on heterogeneity in stream water temperatures as influenced by local influx of cooler subsurface waters. Using field thermal probes and recording thermistors, we identified and characterized coldwater patches potentially...
Channels that were scoured to bedrock by debris flows provided unique opportunities to calculate the rate of sediment and wood accumulation, to make inferences about processes associated with input and transport of sediment, and to gain insight into the temporal succession of channel morphology following disturbance. In an intensive investigation...
The present study investigated the neurocrine and neuroendocrine control of locomotor activity, habitat choice, social behavior, and migratory behavior in juvenile chinook salmon (Oncorhynchus tshawytscha). This was achieved by the manipulation of three neurotransmitter systems; serotonin (5-HT), dopamine (DA), y-amino-n-butyric acid (GABA) and the neuropeptide corticotropin-releasing hormone (CRH). Chemicals were...
Marine ecosystems can be exposed to natural and anthropogenic disturbances that can lead to ecological failures. Marine reserves have been lately suggested to protect marine populations and communities that have been affected by habitat destruction and harvest. This research evaluates the potential role of two marine reserves established in Oregon...
This study examined fish movements and assemblage dynamics in the Wenaha, Grande Ronde, Snake river system of northeast Oregon and southeast Washington. I investigated the role of fish movement in the dynamics of stream fish assemblages and evaluated relationships between species movement, assemblage structure, and the heterogeneity of habitat at...
New approaches are needed to quantify and understand spatial patterns of stream fishes and their environment. Concepts in riverine ecology emphasize the importance of thermal zones and gradual longitudinal changes in physical habitat and biota, but little is known about spatial variability within the river continuum. I present a conceptual...
From 1998-2000, laboratory studies were conducted to examine factors that impact saltwater-entry behavior and saltwater preference (SWP) of juvenile chinook salmon, Oncorhynchus tshawytscha. These factors included bacterial kidney disease, stress and the presence of trout, O. mykiss. An additional study investigated the orientation of the startle response of chinook salmon...
Spring chinook salmon, Oncorhynchus tshawytscha, in the Snake River Basin are listed as endangered under the Endangered Species Act. The typical life history of spring chinook salmon is semelparous. An experiment was performed to see if mature male spring chinook salmon parr could be reconditioned after hand-spawning and spawned in...
The littoral zones of seven reservoirs in the southern Willamette Valley of Oregon were sampled with a boat electroshocker during the summer months of 1995 and 1996. Shoreline substrates were inventoried before sampling sites were randomly selected. Sampling sites consisted of 9 of 12 possible habitat types including four substrate...
From 1996 through 1998 I collected mature female black rockfish off Oregon and examined ovaries and otoliths to estimate weekly, age-specific larval production. In all reproductive seasons, older black rockfish extruded larvae earlier in the season, followed by progressively younger fish. Each year, beginning in May, I collected young-of-the-year (YOY)...
In an effort to identify seasonal distribution patterns and habitat requirements of coastal cutthroat trout Oncorhynchus clarki clarki, movement of tagged and marked individuals (35 radio-tagged, 753 PIT-tagged, and 5,322 fin-clipped) was monitored over a 14-month period in an isolated watershed in southwestern Oregon. Emigration out of the basin was...
The work presented in this dissertation examines possible
modes of action for growth inhibition by anthropogenic endocrine
disrupting chemicals (EDCs) as well as endogenous hormones
associated with growth in fish. Using the sheepshead minnow (SHM)
(Cyprinodon variegatus) as a model, I developed methods to examine
perturbations in the endocrine axis...
Sardines and anchovies are small pelagic fishes that support important commercial fisheries around the world. This project reviews the inverse cyclic behavior in the abundance of these two stocks, which is a striking feature in many regions. In addition, the project used qualitative loop analysis techniques to analyze the feasible...
Genetic diversity of two salmonid species, Dolly Varden (Salvelinus malma) and coastal cutthroat trout (Oncorhynchus clarki clarki) in Prince William Sound, Alaska were examined at multiple spatial scales with three molecular markers. Pleistocene glaciers covered what is now Prince William Sound 8,000- 12,000 years ago and both species colonized the...
This thesis focuses upon whether stressful aspects of an organism's environment are reflected by that organism's shape. It presents an application of the powerful thin-plate spline and relative warp methods from morphometric analysis to demonstrate the overall utility of morphometrics in detecting environmental stress in an estuarine flatfish, the English...
Salmonid populations in the Pacific Northwest are at historic lows and many
populations continue to decline. Previous studies have linked salmonid declines to land
use through degradation of in-stream physical habitat, but few of these studies have taken
geology into consideration. This study relates habitat parameters known to be important...
Recognizing the importance of native black cottonwood-dominated riparian
forests is especially important to preserve, protect, and manage for biodiversity in
the Willamette River Valley. Species composition, structure, and biomass along a
successional gradient from stand initiation to late succession of black cottonwood
(Populus balsamfera L. subsp. trichocarpa (T. & G.)...
The coexistence of multiple predators may have important consequences for the structure and function of communities. Interactions between predators may strongly affect their combined direct and indirect effects on prey populations and lower trophic levels. Predators often have size-structured populations, which may result in intraguild predation characterized by complex trophic...
Marine fish are subject to direct and indirect oceanographic variations operating at short and long time scales. In this study feeding habits and long-term growth condition of several groundfish species of the Pacific Northwest are examined to understand the relationship between variations in the fish's biological and life history components...
The distribution of Lahontan cutthroat trout Oncorhynchus clarki henshawi was assessed in a high-desert stream in southeastern Oregon where beaver Castor canadensis are abundant. Longitudinal patterns of beaver ponds, habitat, temperature, and Lahontan cutthroat trout age group distribution were identified throughout Willow Creek. Three distinct stream segments were classified based...
In the present study, the potential of low-melting point lipids, namely methyl palmitate (MP) and menhaden stearine (MS), were studied for delivery of water-soluble materials to fish larvae. Addition of the solid emulsifier, sorbitan monopalmitate (SMP) resulted in higher RE compared to the liquid emulsifier sorbitan sesquioleate (SSO). Additions of...
Gene expression profiles of tissues and cell-lines can be powerful tools for documenting the genetic response to a particular treatment, such as stressors. However, there is a paucity of information on the genetic stress response in the brain. Therefore, we attempted to profile gene expression in the brain of juvenile...
The migrations upstream of pre-spawned adult steelhead (Oncorhynchus mykiss) and
downstream of post-spawned steelhead (referred to as "kelts") can geographically and
temporally overlap in the Snake River, leading to management challenges for populations
listed under the Endangered Species Act (ESA). This thesis describes the development and
application of a method...
In the Pacific Northwest, regulatory agencies have recently
implemented management strategies for restoration and maintenance of wood
recruitment to streams over time. This allochthonous organic material is a
critical component in the geomorphic and biological structure of forested
streams. Mathematical models are commonly used to evaluate long-term
wood dynamics in...
Longitudinal patterns of fish and benthic invertebrate distribution and
habitat use were similar in Thomas Creek, Oregon but clarity of these patterns
differed. I studied fish and aquatic invertebrates simultaneously, at multiple
scales, and used multivariate statistical techniques to compare responses to the
same environmental conditions. Both types of organisms...
Wild populations of fish are faced with a multitude of stressors, which may include human interaction, toxins, and disease. Benzo(a)pyrene (BaP), a known carcinogen and immunotoxin, has been reported in the stomach contents of juvenile chinook salmon, Oncorhynchus tshawytscha, in urban waterways. We investigated the impact of chronic dietary exposure...
Black rockfish (Sebastes melanops) is an important marine recreational species throughout the Pacific Northwest. Recent catch data indicate a trend of age-truncation in the black rockfish population off the Oregon coast, with older females rapidly disappearing from the population. In populations with broad age distributions, older fish may contribute disproportionately...
This thesis examined the influence of fall-spawning coho salmon on the density, growth rate, body condition, and survival to outmigration of juvenile coho salmon rearing in beaver ponds on the Copper River Delta, Alaska. During the fall of 1999 and 2000 fish rearing in ponds that received spawning salmon were...
Relationships between the structure and composition of riparian vegetation
with channel morphology were examined in three montane meadow streams in the
headwaters of the Upper Grande Ronde River and North Fork John Day River in the
Blue Mountains, northeast Oregon. Vegetation composition, root biomass, and
channel morphology cross-sections were sampled...
I compared hand sampling, two-pass multiple removal sampling, mark-recapture and catchability-based population estimates for the Pacific giant salamander (Dicamptodon tenebrosus) at 22 sites in 11 streams of Cascade Mountains of Oregon. Mark-recapture and catchability-based population estimates were not significantly different (p 0.86). Hand sampling and two-pass multiple removal population estimates...
Low copy number anonymous nuclear loci were used to search for species markers in four species of Klamath Basin suckers. We sequenced 28 randomly chosen loci representing 10,421 bp; 21 loci were similar to sequences in GenBank. Eight fixed sequence differences were found among Klamath species. Locus 120 contained rare...
Because human land use activities often result in increased fragmentation of headwater stream habitats, a better understanding of the effects of fragmentation on the genetic heterogeneity of stream salmonids is useful for effective management. We used eight microsatellites to examine the genetic structure of potamodromous coastal cutthroat trout (Oncorhynchus clarki...
Current riparian management objectives in the Pacific Northwest promote both retention of existing conifers and conversion of hardwood-dominated areas to conifers. Although understanding of relationships between riparian vegetation and salmonid prey availability is growing, temporal variation in these relationships is poorly understood. Seasonal fluxes in availability of aquatic and terrestrial...
With increased resource development on the western Arctic coastal plain of Alaska (especially within the oil extraction industry) it is important to understand the basic life history attributes of whitefish stocks in the region in order to ensure appropriate management. These fish are a crucial part of subsistence harvests for...
I examined hydrological and plant community changes associated with the implementation of a restoration management plan in two riparian meadows located within an agricultural landscape of the central Willamette Valley, Oregon. I established exclosure fencing (a form of passive restoration) in one agricultural field and established fencing and plugged a...
We monitored larval Lost River and shortnose suckers from natal beds in the Williamson and Sprague rivers to nursery grounds in Upper Klamath Lake. Downstream movements occurred at night, in the middle of the channel, and on the falling limb of the hydrograph. Ages, sizes, and developmental stages of larvae...
The present study investigated the effects of stress and exercise on seawater (SW) adaptation and cortisol dynamics in juvenile steelhead (Oncorhynchus mykiss). To examine the effects of stress, fish acclimated to freshwater (FW) were subjected for 3 hours to confinement stress in FW, and subsequently SW (25 ppt) was introduced...
This study was an investigation of lotic macroinvertebrate distribution in northeastern Oregon at two different spatial and biological scales. Examination of assemblages at a limited spatial scale revealed relationships with natural and disturbance gradients and led to questions about distribution of a population at broader spatial scales. In a 16...
Recent emphasis on linkages between essential fish habitat and fish stock productivity has raised concerns about the management of fishing activities such as trawling, which have the potential to impact fish habitat. Knowing specifically where and how intensively trawl effort has occurred over time provides ecologists with the necessary background...
The Pseudophyllidean tapeworm, Schistocephalus solidus, is a parasite that requires both copepods and fish, mainly the threespine stickleback (Gasterosteus aculeatus) as intermediate hosts, and birds as its final host to complete its life cycle. A rapid increase in the abundance of both the non-native stickleback and the tapeworm in the...
Understanding how populations within a species interact across various geographic and temporal scales is fundamental to developing appropriate conservation strategies. I examined the geographic variation in genetic and meristic characters of coastal cutthroat trout (Oncorhynchus clarki clarki) based on
approximately 1,400 fish sampled from 54 populations spanning their distributional range...
This study examines the spatial and temporal distribution and life history of the "offshore" component of the Northeastern Pacific spiny dogfish (Squalus acanthias) population. Distribution was examined in relation to latitude, depth, the Columbia River plume and large-scale climate changes. Fishery and survey data indicate that the Northeastern Pacific spiny...
Sablefish, Anoplopoma fimbria, is a valuable North Pacific Ocean species caught in several commercial fisheries and is often discarded due to size or catch limits. Managers must account for the mortality of discarded fish to assess fish populations and harvest impacts, yet discard mortality rates of specific fisheries are generally...
Aquatic insects that emerge out of streams to mate represent a potential energy
flux to terrestrial food webs. The relative success of an individual aquatic adult insect
is whether it survives long enough to produce offspring, i.e. mate and return to the
stream to oviposit eggs. Some characteristics of the...
The objective of my study was to examine differences in riparian tree and shrub composition associated with adult aquatic emergence and implications for terrestrial spiders in these sites. Seasonal abundance and biomass of adult emergent aquatic insects, riparian arthropod abundances and spider densities were compared between conifer- and hardwood-dominated sites...
Although the effects of extrinsic barriers to dispersal have increasingly been shown to
play a large role in the structuring of contemporary genetic diversity, describing the
relationship between landscape structure, stochastic disturbance, and genetic diversity
remains a major challenge. Here, environmental features for 27 barrier-isolated
populations (2,232 individuals) of coastal...
Most fishes exhibit differences in activity patterns from day to night, with a switch from
high to low activity at dusk and reverse at dawn. Marine reef fishes show similar behavior
among sites, despite dissimilar species assemblages, suggesting that common selection pressures
are leading to convergent behavior. Few studies to...
Shellfish growers have expressed interest in developing high-yielding oyster strains through selective breeding. This dissertation has three objectives to help determine the effects of genetic and environmental variation on production traits (body weight, survival, and yield) of Pacific oysters grown in the Pacific Northwest. Objective 1: Determine if relative family...
The purpose of this study was to understand the influence of organic material and nutrients from spawning salmon and supplemented salmon carcasses on stream food webs. My study objectives were to examine 1) assimilation of salmon-derived nutrients (SDN) by producers and consumers in the food web, 2) epilithic biofilm productivity,...
Estuaries provide juvenile salmonids with highly productive feeding grounds, refugia from tidal fluctuations and predators, and acclimation areas for smoltification. However, these dynamic, fluctuating salinity environments may also be physiologically stressful to growing juvenile fish. In order to evaluate the costs and benefits of estuarine marshes to juvenile Chinook salmon,...
Culverts and road crossings potentially create barriers that impede or prevent
movement and migration of all life stages of resident and anadromous fish. There
have been very few studies of juvenile salmonid movements through retrofitted
(baffled) culverts in the field. Two separate studies were conducted to assess
juvenile cutthroat trout...
Questions relating to economic performance, biological conservation and variation in resource abundance and harvest of ocean shrimp have led to increasing pressure for management action. Developing effective management policies for this highly variable resource requires a comprehensive understanding of the fishery and marine processes. Important factors in understanding the fishery...
Seasonal emergent wetlands in the Pacific Northwest have not been regarded traditionally as fish rearing habitat, despite access to such habitat when river flows overtop riverbanks and connect to the floodplain. As a result, restoration and enhancement projects to remediate for the loss of such wetland habitat are being implemented...
Chinook salmon (Oncorhynchus tshawytscha) have been absent from their historic spawning and rearing grounds in the Metolius River Basin in central Oregon since 1968, when fish passage was terminated at the Pelton Round Butte Hydroelectric Project on the Deschutes River. Plans have been developed to reestablish passage of anadromous fish...
In the fall through spring of 2002/03 and 2003/04, the composition of fish and amphibian communities were examined in intermittent streams in the upper Willamette river basin in western Oregon. I recorded standard aquatic habitat variables and water nutrient concentrations (nitrate and phosphate) and correlated them with fish and amphibian...
Lingcod are an overexploited fish species in the Pacific Northwest and although there has been extensive study of the habitat requirements of adults, particularly during spawning, relatively little is known regarding the habitat requirements of post-settlement juveniles. Many juvenile fish use structural components of habitat to alleviate the risk of...
Streams in the Alsea and Nestucca Sub-Basins were characterized using suites of habitat attributes at the pool and reach scales. These suites were analyzed using a multivariate process with the Multiple Response Permutation Procedure (MRPP) to test for differences in groups. There were differences in the suite of habitat variables...
Invasion by nonnative brook trout (Salvelinus fontinalis) often results in replacement of bull trout (Salvelinus confluentus) in western North America, but the causal mechanisms are not well understood. Removal of brook trout from 1992 to 2000 from Sun Creek in southern Oregon, provided an opportunity to investigate the changes in...
In spite of considerable efforts to restore natural runs of anadromous salmonids in the Pacific Northwest, they remain at risk of extirpation. Along with many other factors influencing the decline, stocking from hatcheries over the past hundred years is often suggested to be a major cause. The listing of over...
Pleuronectid flatfish are generally thought to utilize stereotypical anti-predator behavior to reduce encounters with potential predators, including burial, maintaining a low profile on the bottom, cryptic coloration, and reduced activity. However, a series of laboratory experiments demonstrate significantly different predation rates on juvenile (Age-0) English sole (Parophrys vetulus), northern rock...
This research was designed to broaden the understanding of how timber-harvest affects aquatic macroinvertebrates in perennial and intermittent headwater streams. This study compared emergent and benthic macroinvertebrate assemblages from 20 headwater streams in the central Oregon Coast Range that varied by harvest condition and flow duration. Through comparison of the...
Radiotelemetry was used to study the seasonal movements and habitat use of adult westslope cutthroat trout Oncorhynchus clarki lewisi in Roberts
Creek and Rail Creek, headwater tributaries of the John Day River, Oregon,
from September 2000 to December 2001. The objectives were to (1)
describe adult cutthroat trout life history...
Previous research in South Fork Hinkle Creek suggested that coastal cutthroat trout exhibit an aggregated spatial pattern across multiple spatial scales. To evaluate the persistence of the observed abundance patterns and identify factors that affect those patterns, half-duplex passive integrated transponders (PIT-tags) were implanted in 320 coastal cutthroat trout (>...
The West Fork Smith River, a 69 km2 watershed in the Coast Range of Oregon, is prone to short periods of very high water temperature in mid-summer due to a combination of human and natural influences. In the summers of 2003 and 2004 more than 400 juvenile coho salmon regularly...
For the first objective of this thesis, we attempt to understand the role of water flow and directionality in determining steelhead (Oncorhynchus mykiss) and spring/summer and fall Chinook (O. tschawytscha) migration patterns within the Columbia River Estuary and plume by integrating recent advances in biotelemetry and environmental observation and forecasting...
Recent studies of headwater streams have demonstrated their importance to overall watershed biodiversity, nutrient cycling, and energy flux. However, little attention has been paid to long-term effects of forest harvest on macroinvertebrate communities in headwater streams. This study investigated headwater stream macroinvertebrate communities in the H.J. Andrews Experimental Forest, Oregon,...
Rotifers and brine shrimp (Artemia) are important prey items for rearing marine fish larvae. Their availability in the water column may be reduced when they are transferred to larval rearing tanks at lower temperature. In this study, Brachionus rotundiformis (SS-type) and Brachionus plicatilis (L-type) were semi-continuously cultured and fed on...
An acceptable microparticulate diet for marine fish larvae may be defined as an artificial diet that contains, retains, and delivers the required nutrients to support survival and growth. Factors affecting ingestion rate of prey items by fish larvae include environmental factors such as light intensity, prey/background contrast, possible chemical cues,...
Salmonid run sizes are strongly affected by their early marine stage. Fully understanding the life history of salmonids means understanding how they interact with their marine environment and with other fishes. Changes in the biological and physical environment off the Columbia River region affects the distribution and abundance of predatory...
Pacific rockfishes (genus Sebastes) have attracted wide scientific and public interest from an evolutionary, fishery and conservation standpoints. This dissertation addresses several hypotheses involving spatial and temporal scales of genetic change in two overfished rockfishes, darkblotched (S. crameri) and canary rockfish (S. pinniger), using statistical analyses of genetic variation within...