Background: Short RNAs, and in particular microRNAs, are important regulators of gene
expression both within defined regulatory pathways and at the epigenetic scale. We investigated
the short RNA (sRNA) population (18-24 nt) of the transcriptome of green leaves from the
sequenced Populus trichocarpa using a concatenation strategy in combination with...
Since 1958 when Alfred C. Redfield (1) recognized the similarity between the ratios of elements in living biomass and those dissolved in the surrounding seawater, we have understood that microorganisms largely control the concentrations, distribution, and molecular makeup of nutritional resources in the ocean. The primary elemental ingredients for life,...
Recent natural disasters around the world including
both tsunamis and hurricanes, have highlighted the inability
of wood buildings to withstand wave and surge
loading during these extreme events. Little is known
about the interaction between coastal residential light-frame
wood buildings and wave and surge loading because
often little is left...
This study quantifies the short-term effects of low-, moderate-, and high-severity fire on carbon pools and fluxes in the Eastern Cascades of Oregon. We surveyed 64 forest stands across four fires that burned 41,000 ha (35%) of the Metolius Watershed in 2002 and 2003, stratifying the landscape by burn severity...
Pretreatment of male C57BL/6 mice with low doses of the persistent organochlorine
(OC) pesticide, chlordecone (CD), stimulated biliary excretion of exogenous CH up to 3-fold. Increased biliary excretion occurred without changes in hepatic ATP-binding
cassette transporter G8 (ABCG8) of the bile canaliculus or scavenger receptor class B
type I (SR-BI)...
Tsunami force and pressure distributions on a rigid
wall fronted by a small seawall were determined experimentally
in a large-scale wave flume. Six different
seawall heights were examined, two of which were exposed
to a range of solitary wave heights. The same
experiment was done without a seawall for comparison....
A definition is suggested for affine symmetry tensors, which generalize the notion of affine vectors in the same way that (conformal) Killing tensors generalize (conformal) Killing vectors. An identity for these tensors is proven, which gives the second derivative of the tensor in terms of the curvature tensor, generalizing a...
The eastern South Pacific (ESP) oxygen minimum zone (OMZ) is a permanent hydrographic feature located directly off the coasts of northern Chile and Peru. The ESP OMZ reaches from coastal waters out to thousands of kilometers offshore, and can extend from the near surface to depths greater than 700 m....
The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop,
maintain and use a set of structured, controlled
vocabularies for the annotation of genes, gene
products and sequences. The GO ontologies
are expanding both in content and in structure.
Several new relationship types have been introduced
and used, along with...
Recent work by S. Lentz et al. documents offshore transport in the inner shelf due to a wave-driven return
flow associated with the Hasselmann wave stress (the Stokes–Coriolis force). This analysis is extended using
observations from the central Oregon coast to identify the wave-driven return flow present and quantify the...
Observations, primarily from satellites, have shown a statistical relationship between the surface wind stress and underlying sea surface temperature (SST) on intermediate space and time scales, in many regions inclusive of eastern boundary upwelling current systems. In this paper, this empirical SST–wind stress relationship is utilized to provide a simple...
Successfully shifting to a more piscivorous diet may be an important factor in the growth and survival of juvenile coho salmon Oncorhynchus kisutch and Chinook salmon O. tshawytscha during their first summer in the northern California Current. Nonmetric multidimensional scaling and cluster analysis of diets by size showed several distinct...
Small RNAs, including microRNAs (miRNAs), small interfering RNAs
(siRNAs), and trans-acting siRNAs (tasiRNAs), control gene expression
and epigenetic regulation. Although the roles of miRNAs and
siRNAs have been extensively studied, their expression diversity
and evolution in closely related species and interspecific hybrids
are poorly understood. Here, we show comprehensive analyses...
Surface tensions of high-salinity solutions are significantly different from those of pure water. Our objective was to develop and test a methodology to determine whether these surface tension effects predictably alter imbibition into dry and moist porous media. Static and dynamic experiments were performed using four grades of quartz sand...
We report measurements of the structural, optical, transport, and magnetic properties of single crystals of the
anisotropic p-type transparent semiconductor CuAlO₂. The indirect and direct band gaps are 2.97 and 3.47 eV,
respectively. Temperature-dependent Hall measurements yield a positive Hall coefficient in the measured range
and an activated carrier temperature...
This work compares the Weather Research and Forecasting (WRF) and Hadley Centre Regional Model (HadRM) simulations with the observed daily maximum and minimum temperature (Tmax and Tmin) and precipitation at Historical Climatology Network (HCN) stations over the U.S. Pacific Northwest for 2003–07. The WRF and HadRM runs were driven by...
Analytical methods capable of trace measurement of semi-volatile organic
compounds (SOCs) are necessary to assess the exposure of tadpoles to contaminants as a
result of long-range and regional atmospheric transport and deposition. The following
study compares the results of two analytical methods, one using pressurized liquid
extraction (PLE) and the...
A reexamination of turbulence dissipation measurements from the equatorial Pacific shows that the turbulence diffusivities are not a simple function of the gradient Richardson number. A widely used mixing scheme, the K-profile parameterization, overpredicts the turbulent vertical heat flux by roughly a factor of 4 in the stably stratified region...
Field trials in four distinct agricultural soils were conducted to examine changes to total recoverable and labile soil Cd and Ni concentrations with applications of commercial phosphate fertilizers. The edible portion of wheat and potato crops grown at the field plots were analyzed for recoverable Cd and Ni. Total recoverable...
Apex predators have experienced catastrophic declines throughout the world as a result of human persecution and habitat loss. These collapses in
top predator populations are commonly associated with dramatic increases in the abundance of smaller predators. Known as “mesopredator release,”
this trophic interaction has been recorded across a range of...
To directly determine mortality and predation in the endangered western Steller sea lion Eumetopias jubatus, we deployed implanted, satellite-linked post-mortem data transmitters in 21 juveniles. Data recovered from 4 of 5 detected mortalities exhibited precipitous drops in ambient temperatures followed by immediate onset of transmissions (N = 3), or gradual...
"... One goal of this document is to synthesize the literature on the effects of mechanical thinning on understory plant species. A second goal is to document the effect of prescribed burning on rare, threatened, or endangered species. We review current literature on studies that address effects of prescribed fire...
Cadmium is a common impurity in phosphatic fertilizers and may contribute to soil Cd accumulation. Changes in total and bioavailable Cd burdens to agricultural soils and the potential for plant Cd accumulation resulting from fertilizer input was investigated. Three year field studies were conducted using three dose levels of cadmium-rich,...
Fluctuations of the low frequency sound field in the presence of an internal solitary wave packet during the Shallow Water ’06 experiment are analyzed. Acoustic, environmental, and on-board ship radar image data were collected simultaneously before, during, and after a strong internal solitary wave packet passed through the acoustic track....
Chemical and biological sensor technologies have advanced rapidly in the past five years. Sensors that require low power and operate for multiple years are now available for oxygen, nitrate, and a variety of bio-optional properties that serve as proxies for important components of the carbon cycle (e.g., particulate organic carbon)....
During the past 50 years, plantation Christmas tree production has grown in acreage and sophistication. Nitrogen applications with a tuna can have been replaced by precise, mechanized application of a wide array of nutrients and lime.
Current nutrient management programs must focus on three concepts for success.
This guide provides...
Published October 2009. Reviewed December 2013. Please check for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Applying concepts from the behavioral complexity literature (Ashby, 1952; Denison, Hooijberg, and Quinn, 1995) we examine if supply managers’ multiple roles and the ability to shift among these roles is related to their interpersonal relationship with their key contact within the strategic suppliers’ organization and ultimately with the firm-to-firm relationship....
The predictability of coastal ocean circulation over the central Oregon shelf, a region of strong wind-driven
currents and variable topography, is studied using ensembles of 50-day primitive equation ocean model
simulations with realistic topography, simplified lateral boundary conditions, and forcing from both idealized
and observed wind time series representative of...
The materiality and neutrality of neutral density and several forms of orthobaric density are calculated and compared using a simple idealization of the warm-sphere water mass properties of the Atlantic Ocean. Materiality is the value of the material derivative, expressed as a quasi-vertical velocity, following the motion of each of...
The synthesis of isoindazoles bearing α-ketoester and α-hydroxyester groups via the coarctate cyclization of ester terminated azo-ene-yne precursors is described. Whereas previous studies on isoindazole formation have shown the reaction to proceed through a kinetic coarctate pathway, functionalization of the terminal acetylene with a methyl ester sufficiently stabilizes the carbene...
Multiplicative random cascades (MRCs) can parsimoniously generate highly intermittent patterns similar to those in rainfall. The elemental MRC model parameter is the cascade weight, which determines how rainfall at one scale is partitioned at the next smallest scale in the cascade. While it is known that the probability density of...
Lipid classes, fatty acids (FAs), and stable carbon isotopes of FAs were used to investi-
gate dietary sources of organic carbon for juvenile Atlantic cod
Gadus morhua
during settlement into
eelgrass
Zostera marina
. Primary producers, epibenthic prey, zooplankton, and fish were collected
from August to November 2002 in shallow...
Ship tracks appearing in both the morning and afternoon Moderate Resolution Imaging Spectroradiometer (MODIS) imagery for the Pacific Ocean off the west coast of the United States were used to study the morning-to-afternoon evolution of marine stratus polluted by underlying ships and nearby uncontaminated stratus. Analyzed 925-hPa winds were used...
Objective: Millions of US households experienced food insecurity in 2005.
Research indicates that low wages and little social support contribute to food
insecurity. The present study aimed to examine whether social support moderates
the relationship between income and food insecurity.
Design: Using a mail survey, we collected data on social...
Soluble butane monooxygenase (sBMO), a three-component di-iron monooxygenase complex
expressed by the C2–C9 alkane-utilizing bacterium Thauera butanivorans, was kinetically
characterized by measuring substrate specificities for C1–C5 alkanes and product inhibition
profiles. sBMO has high sequence homology with soluble methane monooxygenase (sMMO) and
shares a similar substrate range, including gaseous and...
The spatial and temporal variability of inner-shelf circulation along the central Oregon coast during the
2004 upwelling season is described using a 70-km-long array of moorings along the 15-m isobath. Circulation
at three stations located onshore of a submarine bank differed from that of a station north of the bank,...
This study examines how coastal banks influence wind-driven circulation along stratified continental shelves. Numerical experiments are conducted for idealized symmetric banks; the standard bank (200 km long and 50 km wide) has dimensions similar to the Heceta Bank complex along the Oregon shelf. Model runs are forced with 10 days...
This study investigates wind-driven circulation in the vicinity of the Heceta Bank complex along the Oregon shelf. Numerical experiments forced with steady winds (0.1 Pa) are conducted; upwelling and downwelling cases are compared. The asymmetric bank bathymetry is the only configurational difference from the symmetric bank runs analyzed in Part...
Managing the financial affairs of a direct marketing operation includes:
• Raising capital
• Identifying financial objectives and creating plans to achieve them
• Budgeting for the future flow of cash receipts and disbursements (cash
management)
• Controlling the use and distribution of funds
• Protecting the operation’s assets
Capital...
Horizontal ice-core sites, where ancient ice is exposed at the glacier surface, offer unique opportunities for paleo-studies of trace components requiring large sample volumes. Following previous work at the Pâkitsoq ice margin in West Greenland, we use a combination of geochemical parameters measured in the ice matrix (δ¹⁸O[subscript ice]) and...
Selecting the right people to meet and serve customers is an important
decision in establishing and operating a direct farm market outlet. When
selecting and training employees, remember that customers expect a cordial atmosphere and friendly service. You want employees who are alert for opportunities to be of service, who...
Selecting a good location for a direct farm‑to‑consumer enterprise is of primary importance in direct marketing. Although roadside stands, U-pick operations, and farmers markets can and do operate in different locations and settings, certain key factors contribute to a satisfactory direct market location:
• Being on a well‑traveled road near...
With rising costs for natural gas, fuel oil, and electricity,more people are thinking of burning firewood or wood pellets to heat their homes. How do you know when it is time to switch from one heating source
to another? This publication can help you make that decision by comparing the...
Strategies for managing production and marketing costs ensure greater
profitability and stability, especially for direct marketers who decide to expand and diversify their operations. In developing these strategies, it is important to understand concepts such as fixed and variable costs, depreciation, and interest. These concepts can help you develop budgets...
This is the synthesis of a series of studies to evaluate perceptions of U.S. Department of Agriculture Forest Service (USFS) law enforcement and investigations (LEI). Five groups were evaluated: four groups of employees from different positions within LEI, and a group of customers of LEI, the line officers of the...