The cultivated sunflower (Helianthus annuus L., x=17) is one of the most important annual oilseed crops in the world. There are very few publicly shared sequence-based DNA markers and genetic maps in sunflower, even though molecular DNA markers and genetic maps have become widely used in all areas of genetic...
Understanding how N availability influences base cation stores is critical for long-term ecosystem sustainability. Indices of nitrogen (N) availability and the distribution of nutrients in plant biomass, soil, and soil water were examined across ten young, unpolluted Douglas-fir (Pseudotsuga menziesii) stands in the Oregon Coast Range spanning a three-fold soil...
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Steven S. Perakis
Understanding how N availability influences base cation stores is
Although previous research in central Oregon has shown soil compaction can lead to a decline in site productivity, the subject is not understood well enough to predict the growth changes resulting from a given level of soil compaction. A study was initiated to relate the basal area, height and volume...
Single nucleotide polymorphisms (SNPs) are the most common DNA polymorphisms in plant and animal genomes. SNPs were identified in the allele sequences of up to 12 sunflower (Helianthus annuus L.) genotypes for a genome-wide sample of 81 loci originally mapped using restriction fragment length polymorphism (RFLP) markers. The RFLP loci...
Medium chain fatty acids (MCFAs) are important industrial feedstocks for
soaps, detergents and surfactants. Interspecific lines derived from Cuphea lanceolata
and Cup hea viscosissima are being domesticated as a temperate source of MCFAs.
These species also serve as model organisms for understanding the biosynthesis of
MCFAs in seeds. Various markers...
Microsatellites or simple sequence repeats (SSRs) are highthroughput sequence based DNA markers that have been exploited as tools for measuring genetic distance and diversity in evolutionary studies, protection of intellectual property, genetic resource conservation management, cultivar identification and molecular breeding of crop plants. We isolated and sequenced 1095 clones from...
Black rockfish (Sebastes melanops) is an important marine recreational species throughout the Pacific Northwest. Recent catch data indicate a trend of age-truncation in the black rockfish population off the Oregon coast, with older females rapidly disappearing from the population. In populations with broad age distributions, older fish may contribute disproportionately...
Meadowfoam (Limnanthes alba Bentham; Order: Brassicales; Family: Limnanthaceae) is a self-compatible, predominantly allogamous, insect pollinated species. Meadowfoam oil is a source of novel unsaturated very-long-chain (VLC) seed oils (C₂₀ and C₂₂) with low concentrations of saturated fatty acids (typically less than 2%) and outstanding oxidative stability. Here we report the...
The mechanisms of substrate recognition by regulatory proteases are not well understood. Presently, two opposing models have arisen to describe E. coil Lon's ability to discriminate between substrates: one suggests the N-terminus involvement while the second suggests the C-terminus involvement. In this project, the role of the C-terminal domain as...
Fire is a major disturbance process in many forests. Long-term studies of the biogeochemical effects of fires, especially on soils, are very rare.
Consequently, long-term effects of fire on soils are often hypothesized from
short-term effects. In a chronosequence study, I studied 24 western Cascades
(Oregon) forest stands thought to...