While the need to solve problems of overcapitalization and excess investment in fisheries is now broadly
admitted, very little information exists on the level of capitalization and the structure of capital invested in
the fishing sector. This paper presents the first results of a research program aiming at assessing the...
Use of Granier-style heat dissipation sensors to measure sap flow is common in plant physiology, ecology and hydrology. There has been concern that any change to the original Granier design invalidates the empirical relationship between sap flux density and the temperature difference between the probes. Here, we compared daily water...
More than 7 km of long and relatively continuous sediment sequences
from 11 sites in the southeast and equatorial Pacific were recovered
during Leg 202 for the study of the Earth’s climate and biogeochemical
systems on scales that range from tectonic (millions of
years) to orbital (tens to hundreds of...
The Elliptic Curve Digital Signature Algorithm (ECDSA) is a public key cryptosystem used for creation and verification of digital signatures in electronic documents. In this thesis, we created a Java applet that provides the functionality of the ECDSA using all of the NIST elliptic curves over GF(p). This applet was...
A unique tumor targeted method, which may be able to deliver a molecule to the surface of a tumor cell using the pH gradient between hypoxic tumor cells and normal tissue has recently been developed. Since solid tumors have been found to have a lower extra cellular pH compared to...
Landscape models for elk distribution developed at Starkey Experimental Forest and Range from 1993-1995 were tested on another landscape during 2003-2005 at Sled Springs Wildlife Demonstration Area. Using location data obtained from 23 wild elk captured and fitted with GPS telemetry collars, 8 spatial resource selection function models representing 8...
In recent years, the methyl erythritol phosphate (MEP) pathway to isoprenoids has been the subject of intensive research. The interest is because isoprenoids have important roles in many cellular processes essential for the survival of several pathogenic organisms, making the inhibition of this pathway an attractive target for the drug...
Over the last three decades the first-order correlation in morphology and orientation of seamount trails
has been called upon to support the concept of a ‘‘fixed’’ Pacific hot spot frame of reference and to explain
the Hawaii-Emperor bend (HEB) by a dramatic change in Pacific plate motion. In this paper,...
I studied developmental rates in a suite of temperate and tropical passerine bird species from the New World to test the hypothesis that tropical passerines exhibit slower patterns of growth and development than temperate birds. I also investigated how the expression of several developmental rates varied with life history traits...
With the growing demand for portable/consumer electronics, such as digital
audio/video (AV), the downscaling of device dimensions, which enables the
integration of an increasing number of transistors in a single chip, is mandatory.
This trend also continuously pushes the power supply voltage down to reduce the
power consumption and improve...
The very restrictive quotas of cod in the Baltic Sea are a strong force for searching alternatives. Since 1996 for instance, the cod quota for the German fishery was reduced from 22 000 t to 13 000 t in the year 2001. And further cuts took place in 2002. However,...
We report the development of a numerical model simulating vertical movement of the
cyanobacterium Trichodesmium spp. Given a range of physiological parameters derived from the literature,
resultant model solutions allow us to explore the ecological significance of vertical migration
by Trichodesmium colonies in a stratified oligotrophic oceanic system such as...
Four studies were conducted on late-summer diet quality and quantity of cattle (Bos taurus), mule deer (Odocoileus hemionus hemionus), and elk (Cervus elaphus) in response to prior grazing by cattle and elk on mixed-conifer rangelands and on related research techniques. In our first study we assessed a photographic technique to...
Escherichia coli double-strand uracil-DNA glycosylase (Dug) was purified to apparent homogeneity from bacteria that were defective in uracil-DNA glycosylase (Ung). After cloning the dug gene, recombinant Dug was overexpressed, purified, and characterized with respect to activity, substrate specificity, product DNA binding, and mechanism of action. Purified Dug excised both uracil...
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5.1.1 Comparison of Substrate Specificity of Dug on U/G and
eC/G DNA
The objective of this project was to investigate the effects of refrigeration storage and processing technologies on the quality and nutraceutical benefit of blackberries. 'Marion' and 'Evergreen', the two major blackberry varieties in Oregon, were evaluated in this study. For refrigeration storage, fresh fruit were packed in clam-shell containers right...
Ascorbic acid, or vitamin C, is well known as a co-factor for proline-hydroxylase and as an anti-oxidant. However, it is also capable of forming covalent bonds, particularly in the role of a nucleophile, henceforth termed 'ascorbylation'.
The ascorbylation of electrophiles can occur under physiological conditions. Furthermore, there are a number...
Human exposure to the carcinogenic polycyclic aromatic hydrocarbons (PAHs) benzo[a]pyrene (B[a]P) and dibenzo[a,l]pyrene (DB[a,l]P) is through environmental complex mixtures, such as urban dust particulate matter (UDPM) and diesel exhaust (DE), however the potency of these PAH within a mixture is not established. To determine the effect of these mixtures on...
School attendance is perceived as a critical issue in today’s primary and secondary educational systems. This manuscript reviews literature that speaks to the complexity of issues related to truancy and then posits that many of the interventions typically recommended to address truancy are ones that school counselors already provide or...
We propose the experimental use of resazurin (Raz) and develop a metabolically active transient storage (MATS) model to include processes that may provide additional information on transient storage from a biogeochemical perspective in stream ecosystems. Raz is a phenoxazine compound that reduces irreversibly to resorufin (Rru) in the presence of...
Radiotelemetry was used to study the seasonal movements and habitat use of adult westslope cutthroat trout Oncorhynchus clarki lewisi in Roberts
Creek and Rail Creek, headwater tributaries of the John Day River, Oregon,
from September 2000 to December 2001. The objectives were to (1)
describe adult cutthroat trout life history...
Floods are the most frequent and damaging of all types of natural disasters and annually affect the lives of millions all over the globe. However, researchers seem to have overlooked the fact that floods do not recognize national boundaries. Therefore, the phenomena of shared, or transboundary floods occurring in international...
Although previous research in central Oregon has shown soil compaction can lead to a decline in site productivity, the subject is not understood well enough to predict the growth changes resulting from a given level of soil compaction. A study was initiated to relate the basal area, height and volume...
The Pacific Northwest has become one of the nation’s premier sweet cherry,
Prunus avium, production areas. As production of sweet cherries has flourished in
Oregon and Washington, so has powdery mildew, caused by the fungus
Podosphaera clandestina, which infects both foliage and fruit causing severe
economic damage to growers. Sweet...
For safety critical complex systems, reliability and risk analysis are important design steps. Implementing these analyzes early in the design stage can reduce costs associated with redesign and provide important information on design viability. In the past several years, various research methods have been presented in the design community to...
The vascular endothelium is a single cell layer that lines the lumen of the entire vasculature. It is the site of synthesis of nitric oxide (NO), a vasodilatory compound synthesized by endothelial nitric oxide synthase (eNOS). NO causes intracellular calcium sequestration of the vascular smooth muscle cells, relaxing and dilating...
The use of Native American fire regimes evolved in the Klamath-Siskiyou bioregion over millennia. A mixture of Native American and Euro-American socio-cultural management has developed from adaptations to climate, topography, ecological processes, and land use practices. This research incorporates Traditional Ecological Knowledge (TEK) to partially examine the role of tribal...
Exposure to polycyclic aromatic hydrocarbons such as benzo[a]pyrene (B[a]P) has been determined to be a risk factor for various forms of human cancer. PAH DNA adducts have been shown to cause mutations, but carcinogenesis is also accompanied by alterations in gene expression. Inhibiting individual cytochrome P450s could clarify the interaction...
Droplet and spray impingement cooling are typically used in high heat flux
thermal management. In this thesis, droplet impingement and evaporation heat transfer
characteristics are determined from measured spatially- and temporally- varying fluid
and surface temperatures. Unique to this study is the documentation of the effects of
using a nanofluid...
The composition and distribution of fish assemblages was examined in a
floodplain lake system in the Amazon basin. Quantitative samples were
collected during the 1992-1993 flooding season at Marchantaria Island, Solimoes
River. A total of 25,819 specimens representing 8 orders, 30 families, 101
genera and 139 species of fish were...
Lahontan cutthroat trout (LCT) (Oncorhynchus clarki henshawi) are currently limited in their distribution to a patchwork of small isolated populations, the result of habitat degradation and natural variation in landscape and in-stream conditions. The objectives of this study were to determine how landscape level topographic features influence LCT distribution patterns....
The antimutagenic potency of wheat grain and berry extracts was studied in vitro against several heterocyclic amines (HCAs) using the Salmonella mutagenicity assay and the anticarcinogencity of wheat grain was studied in vivo using the rat colonic aberrant crypt focus assay. Wheat bran, which binds HCAs in vitro, as well...
This thesis is the consequence of a research effort undertaken by the School of Civil and Construction Engineering at Oregon State University and funded by the Oregon Department of Transportation (ODOT) and the Federal Highway Administration
(FHWA). The principal objective of the effort was to reduce the life cycle cost...
A state-of-the-art radiation detection system for simultaneous spectroscopy
of beta-particles and gamma-rays has been developed. The system utilizes a triplelayer
phoswich detector and a customized Digital Pulse Processor (DPP) built in
our laboratory. The DPP board was designed to digitally capture the analog signal
pulses and, following several digital preprocessing...
The incidence of obesity has increased in the U.S. until an obesity epidemic now exists. American consumers are acutely aware of the consequences of obesity and are increasingly associating the consumption of high-fat foods with having a negative impact upon their health. This has in turn forced producers to grow...
This dissertation consists of two papers on International Trade topics. The first paper addresses the development of trade patterns between countries in transition and developed economies. The second paper focuses on the nonparametric estimation of the Knowledge-Capital model of multinationals. The first paper provides a framework for understanding patterns of...
The El Salvador porphyry copper deposit in the Indio Muerto district of northern Chile has been geologically investigated for more than 60 years and provides one of the best bases for understanding similar environments of ore formation elsewhere in the world. Fourteen new zircon U/Pb isotopic ages obtained via in...
The first project of this thesis is an in vitro study. This study was performed with 8 hydrocortisone topical products on the market for the purpose of comparing one Tec Lab product, a Corticool gel, to the other seven common products on the market. The permeation of these products was...
Objectives: To compare the neuropsychological concussion assessment testing
batteries of the Standardized Assessment of Concussion (SAC™) test and the
Immediate Post-Concussion Assessment and Cognitive Testing (ImPACT™) test
and determine if the tests measure similar neuropsychological functions as well as
determine the test-retest reliability of the pre and post season measures...
In the United States during the last 30 years there has been a shift from extractive natural resource-based economies of the Old West to a New West defined by environmental protection. Over the past century, a growing national support for environmental protection has influenced a lengthening list of national and...
Recently, changes in human performance following whole-body vibration (WBV) training have been attributed to enhanced neuromuscular function. However, the exact neural and muscular mechanisms responsible for these changes remain less understood. The purpose of this study was to evaluate the acute and chronic effects of whole body vibration on the...
Shorebirds display great variation in mating systems and breed in dynamic environments that are increasingly subject to human threats worldwide. In order to adequately assess productivity and demography of shorebird populations, it is important to understand factors that influence patterns of parental care and reproductive success. The Black Oystercatcher (Haematopus...
Environmental stress can negatively affect the ability of organisms to reproduce. Energetic trade-offs exist in all organisms, and under stress, energy may be allocated away from reproduction and towards physiological defense and repair mechanisms. The rocky intertidal environment is ideal for investigating the influence of environmental stress, as organisms are...
Estuaries are once again emerging as important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. Yaquina Bay, located...
Grapes (e.g. Vitis vinifera L.) are one of the more important fruit crops from an economic standpoint with world market values over 550 million US dollars in 2007 and 2008, second to apples (United States Department of Agriculture). While a satisfactory level of ripeness is of primary concern, the quality...
In a fluidized bed of magnetically susceptible particles, the presence of
a magnetic field induce the formation of particle chains due to interparticle
magnetic forces. The resulting effect is a change in the overall spatial
distribution of the particles, transitioning from a random, isotropic distribution
to an ordered, anisotropic distribution....
This study investigates the hydrodynamic characteristics of droplet impinging on heated surfaces using High Speed High Resolution (HSHR) imaging and evaluates the effect of surface temperature and using water and a nanofluid on a polished and a nano-structured surface. Three types of surfaces are used in the
study: polished silicon,...
For nearly two decades, foresters in the Oregon Coast Range have been witnessing a substantial decease in Douglas-fir (Pseudotsuga menziesii var. menziesii [Mirb.] Franco.) vigor and growth, caused by Swiss needle cast (Phaeocryptopus gaeumannii). Currently, no solutions are in sight but aerially-applied sulfur may alleviate Swiss needle cast and its...
Protein disulfide isomerase (PDI), a member of the thioredoxin superfamily, contains two domains with significant sequence homology to the active sites in thioredoxin. PDI facilitates the folding of nascent proteins in the endoplasmic reticulum (ER), binds hormones and Ca²⁺, catalyzes the glutathione dependent reduction of dehydroascorbate, serves as a major...
Harvesting energy from the environment for powering micro-power devices have been increasing in popularity. These types of devices can be used in embedded applications or in sensor networks where battery replacement is impractical. In this dissertation, different methods of energy harvesting from the environment are explored as alternative sources of...
Land use alters the physical and biological structure of stream ecosystems and potentially alters their capacity to process nitrogen (N), an essential nutrient that has nearly doubled in abundance on the biosphere
during the past century from human activities. In this dissertation, I quantified uptake and transformation of nitrate (NO₃⁻)...
Several different petrological techniques have been applied to lava flows between
200 to 475,000 years old from Mount Hood, Oregon. Mount Hood is unusual, in comparison to nearby Mount St. Helens and Mount Jefferson, in that it has produced relatively homogeneous lava compositions over 475,000 years. Erupted lavas are mostly...
Western juniper has rapidly expanded into sagebrush steppe communities in the Intermountain West during the past 120 years. This expansion has occurred across a wide range of soil types and topographic positions. These plant communities, however, are typically treated in current peer-reviewed literature generically. The focus of this research is...
The USDA Forest Service has an outstanding scientific resource in the 77 Experimental Forests and Ranges that exist across the United States and its territories. These valuable scientific resources incorporate a broad range of climates, forest types, research emphases, and history. This publication describes each of the research sites within...
The USDA Forest Service has an outstanding scientific resource in the 77 Experimental Forests and Ranges that exist across the United States and its territories. These valuable scientific resources incorporate a broad range of climates, forest types, research emphases, and history. This publication describes each of the research sites within...
Orchard floor management (OFM) practices can improve soil function and alter
the soil biological community. Soil function is dependent on soil forming materials and
on management practices but little is known about how OFM affect orchard soil quality,
fertilizer N uptake, or tree growth and production.
Research plots were located...
The College of Forestry Integrated Research Project (CFIRP) is an on-going experiment in the eastern Coast Range foothills of western Oregon. Started in 1989, a team of scientists, resource managers, and students at Oregon State University designed and implemented silvicultural alternatives to clearcutting. These silvicultural practices aimed to create and...
Standard accounts of women's relationship with technology stress women's need to overcome anxiety to achieve competence with computers. Recent studies provide evidence that this woman-anxiety-technology connection is an oversimplification of the relationship between women and computers. New literature also suggests that making computers more appealing will help girls overcome computational...
The Pacific Northwest has a relatively low diversity of primary freshwater fishes with most of the endemism and diversity in the Columbia River and Klamath River. However, the Oregon Coastal Subprovince defined as the coastal rivers from Miami River in the north to Sixes River in the south, has a...
Published July 2002. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
This dissertation consists of three essays that evaluate various types of health care policies from the social welfare perspective. Chapter 1 introduces the main ideas and framework of this dissertation. Chapter 2 evaluates the new co-payment policy, enacted on July 15, 2005 under Taiwan’s National Health Insurance (NHI). We show...
E. coli thioredoxin (TRX) was modified by the episulfonium ion derived from S-(2-chloroethyl)glutathione (CEG) or S-(2-chloroethyl)cysteine (CEC). The alkylation site was located at Cys-32, which was confirmed by tandem mass spectrometry. Two forms of native TRX, Oxi- and Red-TRX, and two modified TRXs, GS- and Cys-TRX, were examined by hydrogen/deuterium...
Ecosystems are facing increasing threats from human related activities, such as overfishing, pollution, habitat destruction, species invasions, and diseases, among others. While oceanic islands provide natural laboratories to understand ecological and evolutionary process, they are also particularly vulnerable to these impacts, given their usual isolation from the mainland and the...
Advanced low power devices promote the development of micro power generators (MPGs) to replace the batteries to power them. Due to the trend in decreasing integrated circuit (IC) supply voltages, power supply designers are facing more and more serious challenges. The objective of this research is to design a power...
In this dissertation I study evolutionary patterns at genes encoding antimicrobial peptides (AMPs) in frogs. AMPs are short, amphipathic, cationic, secreted proteins that kill bacteria and other pathogens through a non-catalytic mechanism that involves
binding to and disrupting the microbial cell membrane. In many animal taxa, positive selection is much...
Knowledge workers are struggling in the information flood. There is a growing interest in intelligent desktop environments that help knowledge workers organize their daily life. Intelligent desktop environments allow the desktop user to define a set of “activities” that characterize the user’s desktop work. These environments then attempt to identify...
Polycyclic aromatic hydrocarbons (PAHs) are a re-emerging class of environmental pollutants. The persistent nature of these highly toxic compounds along with their ubiquity in the environment creates an unavoidable route of exposure. The developing fetus and neonate are a particularly susceptible population due to their incomplete complement of xenobiotic metabolizing...
Without the natural occurrence of fire in ponderosa pine forests of the western US, lodgepole pine has started to dominate regeneration in many forest stands and may be gradually replacing ponderosa pine over time. This development, however, conflicts with recent efforts in this region to restore old-aged, open ponderosa pine...
Published June 2006. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
The complexity of forest management has increased with the scope of resources of concern and the level of scrutiny from stakeholders. The design and use of specialized computer software, often referred to as “decision support systems” (DSS), is one method for helping managers deal with this complexity. DSS have proven...
Cancer is one of the leading causes of death in the U.S., and new approaches to control cancer are constantly sought. This dissertation is comprised of two parts: (i) improving the uptake and retention of gadolinium in tumors for potential gadoliniumneutron capture therapy (Gd-NCT) and (ii) integration of gemcitabine or...
The information in this report is for the purpose of informing cooperators in industry, colleagues at other universities, and others of the results of research in field crops. Reference to products and companies in this publication is for specific information only and does not endorse or recommend that product or...
Purpose: The Purpose of this research was to design, implement and evaluate a patient centered asthma intervention pilot program directed by physicians and administered by community pharmacists to a group of Managed Care contracted Oregon Health Plan asthmatics. The evaluation was to determine if the proposed intervention could improve the...
Since the early 1990s, declines in northern spotted owl (Strix occidentalis caurina) populations have been documented through extensive field surveys and range-wide demographic analyses. Although loss of late-successional forest has been credited as the primary cause for spotted owl population declines, environmental variation has also been shown to influence vital...
During catalysis the flavoprotein domain of neuronal nitric-oxide synthase (nNOS) shuttles NADPH-derived reducing equivalents from FAD to FMN and then to the P450-heme enabling heme-based oxygen activation and subsequent NO-synthesis. The binding of Ca²⁺-activated calmodulin (Ca²⁺-CaM) to nNOS alleviates inhibition of flavin mediated electron transfer within the diflavin domain, which...
The purpose of this study was to examine the effect of extreme exercise on vitamin B-6
metabolism and urea nitrogen. Nine men and five women completed two 5-day trials; Trial 1
(T1) included a 50-km ultramarathon on day 4 and during Trial 2 (T2) subjects were "inactive"
on day 4....
The seasonal distribution of bioavailable organochiorine contaminants in surface
water and the potential environmental factors influencing their bioavailability were
evaluated. The study was carried at the lower Willamette River at Portland Harbor, Oregon
where surface water runoff varied according to season. Bioavailable water concentrations of
DDTs and PCBs were determined...
PCR-based codon-specific random mutagenesis and site-specific mutagenesis were performed to construct a library of 18 amino acid changes at Arg276 in the conserved leucine-loop of the core catalytic domain of human uracil-DNA glycosylase (UNG). Each Arg276 mutant was then overproduced in E. coli cells and purified to apparent homogeneity by...
Published June 2001. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
The Early Oligocene Oregon Coast Range Intrusions (OCRI) consist of gabbroic rocks and lesser alkalic intrusive bodies that were emplaced in marine sedimentary units and volcanic sequences within a Tertiary Cascadia forearc basin. The alkalic intrusions include nepheline syenite, camptonite, and alkaline basalt. The gabbros occur as dikes and differentiated...
Light-frame construction practices and materials have changed greatly
over the past 100 years. Contemporary research has focused on modern construction; thus, we know a great deal about the behavior of modern lightframe buildings under lateral forces. However, there are many light-frame buildings that were built prior to the introduction of...
The use of an adjacency matrix to determine distant (not maximal or
minimal) subgroup and supergroup relationships between crystallographic spacegroup
types is described. Full lists of space-group types that are supergroups and
subgroups for every space-group type were compiled. A list of the space-group
types connected to each space-group type...