Index Catalog // ScholarsArchive@OSU

ASRP: the Arabidopsis Small RNA Project Database

Creator:: Gustafson, Adam M., Allen, Edwards, Givan, Scott, Smith, Daniel, Carrington, James C., and Kasschau, Kristin D.
Abstract:: ABSTRACT Eukaryotes produce functionally diverse classes of small RNAs (20–25 nt). These include microRNAs (miRNAs), which act as regulatory factors during growth and development, and short-interfering RNAs (siRNAs), which function in several epigenetic and post-transcriptional silencing systems. The Arabidopsis Small RNA Project (ASRP) seeks to characterize and functionally analyze the...
Resource Type:: Article
Full Text:: , Database issue D637–D640 doi:10.1093/nar/gki127 composed of web pages delivered by an apache HTTP

Tree rainfall interception measured by stem compression

Creator:: Friesen, J., van Beek, C., Selker, J., Savenije, H. H. G., and van de Giesen, N.
Abstract:: A method for measuring whole-tree interception of precipitation is presented which employs mechanical displacement sensors to measure trunk compression caused by the water captured by the tree. This direct and nondestructive method is demonstrated to be sensitive to less than 5 kg of interception field tests in Netherlands and Ghana.
Resource Type:: Article
Full Text:: heat-pulse technique, J. Exp. Bot., 39(1), 115–123, doi:10.1093/jxb/39.1.115. Hancock, N. H., and J. M

Analysis and comparison of nonlinear tree height prediction strategies for Douglas-fir forests

Creator:: Temesgen, H., Monleon, V. J., and Hann, D. W.
Abstract:: Using an extensive Douglas-fir data set from southwest Oregon, we examined the (1) performance and suitability of selected prediction strategies, (2) contribution of relative position and stand-density measures in improving tree height (h) prediction values, and (3) effect of different subsampling designs to fill in missing h values in a...
Resource Type:: Article

The Gene Ontology in 2010: extensions and refinements

Creator:: Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
Abstract:: The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
Resource Type:: Article
Full Text:: in 2010: extensions and refinements. Nucleic Acids Research, 38, D331-D335. doi:10.1093/nar/gkp1018

Gramene: a growing plant comparative genomics resource

Creator:: Liang, Chengzhi, Jaiswal, Pankaj, Hebbard, Claire, Avraham, Shuly, Buckler, Edward S., Casstevens, Terry, Hurwitz, Bonnie, McCouch, Susan, Ni, Junjian, Pujar, Anuradha, Ravenscroft, Dean, Ren, Liya, Spooner, William, Tecle, Isaak, Thomason, Jim, Tung, Chih-wei, Wei, Xuehong, Yap, Immanuel, Youens-Clark, Ken, Ware, Doreen, and Stein, Lincoln
Abstract:: Gramene (www.gramene.org) is a curated resource for genetic, genomic and comparative genomics data for the major crop species, including rice, maize, wheat and many other plant (mainly grass) species. Gramene is an open-source project. All data and software are freely downloadable through the ftp site (ftp.gramene.org/pub/gramene) and available for use...
Resource Type:: Article
Full Text:: resource. Nucleic Acids Research, 36, D947-D953. doi:10.1093/nar/gkm968 10.1093/nar/gkm968 Oxford

Gramene: a bird's eye view of cereal genomes

Creator:: Jaiswal, Pankaj, Ni, Junjian, Yap, Immanuel, Ware, Doreen, Spooner, William, Youens-Clark, Ken, Canaran, Payan, Fogleman, Molly, Hebbard, Claire, Ren, Liya, Liang, Chengzhi, Zhao, Wei, Ratnapu, Kiran, Faga, Benjamin, Avraham, Shuly, Schmidt, Steven, Casstevens, Terry M., Buckler, Edward S., Stein, Lincoln, and McCouch, Susan
Abstract:: Rice, maize, sorghum, wheat, barley and the other major crop grasses from the family Poaceae (Gramineae) are mankind’s most important source of calories and contribute tens of billions of dollars annually to the world economy (FAO 1999, http://www.fao.org; USDA 1997, http://www.usda.gov). Continued improvement of Poaceae crops is necessary in order...
Resource Type:: Article
Full Text:: . doi:10.1093/nar/gkj154 10.1093/nar/gkj154 Oxford University Press Version of Record http

Five million years of compositionally diverse, episodic volcanism : construction of Davidson Seamount atop an abandoned spreading center

Creator:: Clague, D. A., Paduan, J. B., Duncan, Robert A., Huard, J. J., Davis, A. S., Castillo, P. R., Lonsdale, P., and DeVogelaere
Abstract:: Davidson Seamount, a volcano located about 80 km off the central California coast, has a volume of ~320 km³ and consists of a series of parallel ridges serrated with steep cones. Davidson was sampled and its morphology observed during 27 ROV Tiburon dives. During those dives, 286 samples of lava,...
Resource Type:: Article

Computer aided model generation for high performance dynamometers

Creator:: Ko, Seung-uk
Abstract:: A model has been developed for accurate emulation of the complex behavior of high performance dynamometers used in a broad range of applications including manufacturing systems, biomechanics research, and crash testing. The key objective of this research has been to reach the proper balance between the accuracy of emulation and...
Resource Type:: Masters Thesis

Coupled momentum and heat transport in laminar axisymmetric pipe flow of ferrofluids in non-uniform magnetic fields : theory and simulation

Creator:: Cruz-Fierro, Carlos Francisco
Abstract:: The effect of a non-uniform magnetic field on the coupled transport of momentum and heat is studied for the case of laminar pipe flow of a magnetically susceptible ferrofluid. The momentum and heat transport equations are complemented with the necessary electromagnetic terms and used to develop a computer simulation of...
Resource Type:: Masters Thesis

Status of the European Green Crab in Oregon and Washington Estuaries in 2008

Creator:: Yamada, Sylvia Behrens and Randall, Andrea
Abstract:: Prepared for the Aquatic Nuisance Species Project, Pacific States Marine Fisheries Commission.
Resource Type:: Technical Report
Full Text:: Exploration of the Sea, Journal of Marine Science, 65: 725-729. doi:10.1093/icesjms/fsm191 October 23

ScholarsArchive@OSU

ASRP: the Arabidopsis Small RNA Project Database

Tree rainfall interception measured by stem compression

Analysis and comparison of nonlinear tree height prediction strategies for Douglas-fir forests

The Gene Ontology in 2010: extensions and refinements

Gramene: a growing plant comparative genomics resource

Gramene: a bird's eye view of cereal genomes

Five million years of compositionally diverse, episodic volcanism : construction of Davidson Seamount atop an abandoned spreading center

Computer aided model generation for high performance dynamometers

Coupled momentum and heat transport in laminar axisymmetric pipe flow of ferrofluids in non-uniform magnetic fields : theory and simulation

Status of the European Green Crab in Oregon and Washington Estuaries in 2008

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