Index Catalog // ScholarsArchive@OSU

From teacups to lumber : archaeological site content and integrity of the Copeland Site (35BE90), Corvallis, Oregon

Creator:: Kanaby, Kara M.
Abstract:: This thesis describes the archaeological site content and integrity of the Copeland site (35BE90) in Corvallis, Oregon. The Copeland site is owned by the Benton County Historical Society and is the future home of the Benton County Historical Museum. In 2001, an Oregon State University archaeological field school was conducted...
Resource Type:: Masters Thesis
Full Text:: AN ABSTRACT OF THE THESIS OF Kara M. Kanaby for the degree of

The effects of defoliation on Bromus tectorum seed production and growth

Creator:: Mayer, Kara Hempy
Abstract:: Cheatgrass (Bromus tectorum L.) is a widespread exotic weed in the Intermountain sagebrush steppe. An annual grass, it is highly prolific and very competitive with native perennial grass seedlings. A clipping experiment carried out at two cheatgrass-dominated sites (Lincoln Bench and Succor Creek) in eastern Oregon analyzed effects of defoliation...
Resource Type:: Masters Thesis
Full Text:: Redacted for privacy AN ABSTRACT OF THE THESIS OF Kara

Final report : environmental stresses and skeletal deformities in fish from the Willamette River, Oregon, USA

Creator:: Villeneuve, Daniel L., Curtis, Lawrence R., Jenkins, Jeffrey J., Warner, Kara E., Tilton, Fred A., Kent, Michael L., Watral, Virginia G., Cunningham, Michael E., Markle, Douglas F., Sethajintanin, Doolalai, Krissanakriangkrai, Oraphin, Johnson, Eugene R., Grove, Robert Allan, Anderson, Kim A., Oregon State University. Department of Microbiology, Oregon State University. Department of Environmental and Molecular Toxicology, Oregon State University. Department of Fisheries and Wildlife, and Institute for Natural Resources
Abstract:: The Willamette River, one of only 14 American Heritage Rivers, flows through the most densely populated and agriculturally productive region of Oregon. Previous biological monitoring of Willamette River fish detected elevated frequencies of skeletal deformities in fish from certain areas of the lower (NP [NP], rivermile [RM] 26-55) and middle...
Resource Type:: Technical Report
Full Text:: , USA By Daniel L. Villeneuve†¥, Lawrence R. Curtis†, Jeffrey J. Jenkins†, Kara E. Warner†, Fred

The Gene Ontology in 2010: extensions and refinements

Creator:: Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
Abstract:: The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
Resource Type:: Article
Full Text:: , USA); David Botstein, Kara Dolinski, Michael S. Livstone, Rose Oughtred (Lewis- Sigler Institute for

Proteomic approach to the analysis of DNA-binding proteins using mass spectrometry

Creator:: Stapels, Martha Degen
Abstract:: In proteomic studies, separate experimental protocols have been necessary to identify proteins, determine their function, and predict their three-dimensional structure. In this study, a function-based separation of proteins was conceived to fractionate proteins prior to enzymatic digestion. In the initial demonstration of this technique, a DNA substrate was used to...
Resource Type:: Dissertation
Full Text:: academic committee: Dr. Michael Schuyler, Dr. James Ingle, Dr. Kevin Gable, and Dr. George Pearson. I

Mass spectrometric analysis of UV-crosslinked protein-nucleic acid complexes

Creator:: Doneanu, Catalin E.
Abstract:: The DNA-binding domains of E. coli uracil-DNA glycosylase (Ung) and human replication protein A (hRPA) were studied using a general protocol developed in our laboratory for probing protein-DNA interactions. The procedure involves purification and mass spectrometric analysis of the nucleopeptide-products of a tryptically digested UV-crosslinked protein-nucleic acid complex. In the...
Resource Type:: Dissertation
Full Text:: , Dr. Michael Schimerlik and Dr. John Simonsen. For all my friends who provided help, ideas and

Chlordecone pretreatment promoted subcellular distribution of scavenger receptor class B type II to murine hepatic microsomes ; mass spectrometry detected hepatic soluble cholesterol binding proteins and comparison of protein iTRAQ ratios using ESI QTOF and MALDI TOF/TOF

Creator:: Scheri, Richard C.
Abstract:: Chlordecone belongs to the class of persistent organochlorine pesticides that are remarkably resistant to environmental degradation. Even though their use was banned in the United States in 1978, these compounds can still be detected in both humans and wildlife throughout the world. Previous work has shown that the pretreatment of...
Resource Type:: Dissertation
Full Text:: . Many thanks are also due to the individuals that served on my committee: Dr. Michael Schimerlik, Dr

Bridging differences : Saudi Arabian students reflect on their educational experiences and share success strategies

Creator:: Shaw, Donna L. (Donna Laible)
Abstract:: This study examines the U.S. educational experiences of Saudi Arabian students. Using qualitative case study and photo-elicitation research methods, this study conducted multiple interviews with 25 Saudi students and explored their perceptions of their American learning environment, how it differed from Saudi Arabia, and the strategies they developed to successfully...
Resource Type:: Dissertation
Full Text:: guidance made all the difference in the world and committee members Michael Dalton, David Noakes, Dwaine

Tandem mass spectrometric analysis of protein and peptide adducts of lipid peroxidation-derived aldehydes

Creator:: Wu, Jianyong
Abstract:: The adduction of proteins and other biomolecules by electrophilic lipid peroxidation products such as 4-hydroxy-2-nonenal (HNE), 4-oxo-2-nonenal (ONE), malondialdehyde (MDA) or acrolein (ACR) is thought to be an initiating and/or propagating factor in the pathophysiology of several diseases such as atherosclerosis, diabetes, Alzheimer's, Parkinson's and other age-related disorders. The identification...
Resource Type:: Dissertation
Full Text:: MS/MS analysis were performed to confirm the adduct type and the modification sites. Michael

Gas-phase fragmentation chemistry of protonated peptide ions

Creator:: Bythell, Benjamin James
Abstract:: The fragmentation characteristics of protonated peptides have been investigated using tandem mass spectrometry (MS/MS) under various fragmentation regimes and detailed density functional theory (DFT) reaction pathway calculations. The DFT calculations predict novel salt-bridge stabilized transition structures as well as consecutive reactions occurring in proton-bound dimers for some of the ions...
Resource Type:: Dissertation

ScholarsArchive@OSU

From teacups to lumber : archaeological site content and integrity of the Copeland Site (35BE90), Corvallis, Oregon

The effects of defoliation on Bromus tectorum seed production and growth

Final report : environmental stresses and skeletal deformities in fish from the Willamette River, Oregon, USA

The Gene Ontology in 2010: extensions and refinements

Proteomic approach to the analysis of DNA-binding proteins using mass spectrometry

Mass spectrometric analysis of UV-crosslinked protein-nucleic acid complexes

Chlordecone pretreatment promoted subcellular distribution of scavenger receptor class B type II to murine hepatic microsomes ; mass spectrometry detected hepatic soluble cholesterol binding proteins and comparison of protein iTRAQ ratios using ESI QTOF and MALDI TOF/TOF

Bridging differences : Saudi Arabian students reflect on their educational experiences and share success strategies

Tandem mass spectrometric analysis of protein and peptide adducts of lipid peroxidation-derived aldehydes

Gas-phase fragmentation chemistry of protonated peptide ions

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