Neurospora crassa has been for decades a principal model for filamentous
fungal genetics and physiology as well as for understanding
the mechanism of circadian clocks. Eukaryotic fungal and animal
clocks comprise transcription-translation-based feedback loops that
control rhythmic transcription of a substantial fraction of these transcriptomes,
yielding the changes in protein...
The Magnuson Stevens Act (MSA) 2007 added Limited Access Privilege
Programs (LAPP) in order to provide assistance to fishing communities and
community-based associations in order to receive quota allocation. Community
fishing associations (CFAs) are a type of program that falls under the LAPP. The
MSA emphasizes several eligibility criteria to...
The Magnuson Stevens Act (MSA) 2007 added Limited Access Privilege Programs (LAPP) in order to provide assistance to fishing communities and community-based associations in order to receive quota allocation. Community fishing associations (CFAs) are a type of program that falls under the LAPP. The MSA emphasizes several eligibility criteria to...
All parasitoid apostome ciliates infecting krill in the northeastern Pacific are currently assigned to the genus Pseudocollinia. Each krill specimen is apparently infected by only 1 Pseudocollinia species. We describe Pseudocollinia similis sp. nov., discovered infecting the krill Thysanoessa spinifera off Oregon, USA. Its protomite-tomite stage resembles that of P....
This study investigated the composition and character of organic matter on suspended particulate material (SPM) in the Columbia River estuary system to determine the contribution of biological activity in lateral bays to the greater nutrient cycle of the river. Water samples were collected during neap and spring tidal forcing (25...
As reverse transfer students become a larger part of community college enrollments, it is important to better understand the underlying causes of this nontraditional population’s emergence in the traditional community college system. This quantitative descriptive study found that approximately nine percent of the student body enrolled at Rogue Community College...
Recent climatic warming trends and increases in the frequency and extent of wildfires have prompted much concern regarding the potential for rapid change in the structure and function of forested ecosystems around the world. Episodes of mortality in wildfires and insect outbreaks associated with drought have affected large areas and...
The following experiment presented herein compared growth, physiological, and reproductive responses of beef heifers with (MI) or without (CON) access to a creep-feeder, as a manner to stimulate metabolic imprinting while nursing their dams. On d 0 of the experiment, 60 Angus × Hereford heifers were ranked by initial BW...
Biodiversity losses in terrestrial, freshwater, and marine systems are accelerating at a global scale and the most threatened vertebrate taxa are those associated with freshwater habitats. The causes of biodiversity losses are often complex and include synergistic effects of natural and human-induced stressors, such as habitat loss and fragmentation, urbanization,...
Organic compounds which contain one or more nitrogen atoms are especially important as they are disproportionately represented among biologically active molecules. As a result, significant effort has been focused on the development of methods for the synthesis of nitrogenous molecules. We identified the aminal as an under-explored functional group. Despite...
Substantial scientific investment has been directed towards understanding factors that influence distribution patterns and animals' remarkable ability for precise orientation and navigation, yet fundamental gaps in our knowledge remain. In my dissertation, I applied emerging genetic technologies to conduct a top-down and bottom-up investigation of animal movement and cue perception....
OBJECTIVE: To evaluate the effectiveness of a 3-month treadmill desk intervention in eliciting changes in physical activity and sedentary behavior among overweight/obese office workers. METHODS: A randomized controlled trial was conducted among overweight/obese office workers (n=41; mean age = 40.1 ± 10.1 years) at a private workplace. Participants were randomly...
Since its inception in 1985, the Tri-State variety development program has primarily focused on the development of processing and dual-purpose (process and fresh) russets. Recent breeding efforts have focused more on improving genetic resistance to various pests and diseases as a means of lowering production costs. During the past decade,...
Because studies of forestry effects on wetlands have been so infrequent in the Pacific Northwest, each section in this report drew heavily from studies of forestry impacts to streams and riparian zones. After assembly and synthesis, that information was extrapolated, mostly in the form of hypotheses, to the very different...
Polyandry is a source of sexual conflict and males often try to limit female promiscuity. Consequently, male manipulation of receptivity via antiaphrodisiacs and copulatory plugs that prevent female remating can be a source of sexual conflict. This sexual conflict may be intensified when females must remate for fertility insurance. Male...
We monitored the distribution, abundance and productivity of the federally threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast from 1 April – 15 September 2014. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North and South...
This paper distinguishes three concepts of “race”: bio-genomic cluster/race, biological race, and social race. We map out realism, antirealism, and conventionalism about each of these, in three important historical episodes: Frank Livingstone and Theodosius Dobzhansky in 1962, A.W.F. Edwards’ 2003 response to Lewontin (1972), and contemporary discourse. Semantics is especially...
Clark volcano of the Kermadec arc, northeast of New Zealand, is a large stratovolcano comprised of two coalescing volcanic cones; an apparently younger, more coherent, twin-peaked edifice to the northwest and a relatively older, more degraded and tectonized cone to the southeast. High-resolution water column surveys show an active hydrothermal...
Cotoneaster is a genus of ornamental landscape plants commonly affected by fire blight. Fire blight is a disease caused by the bacterial pathogen, Erwinia amylovora (Burrill) Winslow et al. that attacks a wide range of taxa in the apple subfamily (Maloideae; Rosaceae). To assess susceptibility of species and identify potential...
Lepidopteran nucleopolyhedroviruses are members of the Baculoviridae and have been categorized as having two morphotypes of occluded virions: multiple nucleocapsids or single nucleocapsids within the virion envelope. Although it is a definitive characteristic of specific viruses, it appears to lack a defined genetic basis and is independent of virus phylogeny....
The mineralogical and stable isotopic composition of authigenic carbonates from the Krishna-Godavari (KG) and Mahanadi Basin provide a deeper insight into the processes inducing carbonate formation in the sediments of the eastern continental margin of India in the Bay of Bengal. Authigenic carbonate cements, (micro) nodules, bioturbation casts and tubes...
Red alder (Alnus rubra), a nitrogen(N)-fixing deciduous broadleaf tree, can strongly influence N
concentrations in western Oregon and Washington. We compiled a database of stream N and GIS-derived landscape
characteristics in order to examine geographic variation in N across the Oregon Coast Range. Basal area
of alder, expressed as a...
Total organic carbon (TOC) content of marine sediments represents residual carbon, originally derived from terrestrial and marine sources, which has survived seafloor and shallow subseafloor diagenesis. Ultimately, its preservation below the sulfate reduction zone in marine sediments drives methanogenesis. Within the gas hydrate stability zone (GHSZ), methane production along continental...
In the past 100 years since the birth of fisheries oceanography, research on the early life history of fishes, particularly the larval stage, has been extensive, and much progress has been made in identifying the mechanisms by which factors such as feeding success, predation, or dispersal can influence larval survival....
Effects of climate change, retreating glaciers, and changing storm patterns on debris flow hazards concern
managers in the Cascade Range (USA) and mountainous areas worldwide. During an intense rainstorm in
November 2006, seven debris flows initiated from proglacial gullies of separate basins on the flanks of Mount
Rainier. Gully heads...
In addition to well established properties that control the presence or absence of the hydrate stability zone, such as pressure, temperature, and salinity, additional parameters appear to influence the concentration of gas hydrate in host sediments. The stratigraphic record at Site 17A in the Andaman Sea, eastern Indian Ocean, illustrates...
Substantial investments in fuel management activities on national forests in the western US are part of a national strategy to reduce human and ecological losses from catastrophic wildfire and create fire resilient landscapes. Prioritizing these investments within and among national forests remains a challenge, partly because a comprehensive assessment that...
We show that the value of the total angular momentum (AM) carried by a surface mode can be interpreted as representing the transverse position of the center or balance point of the power flow through the mode. Especially in the lossless cases, the value of the Abraham AM per unit...
Primary injury prevention strategies are needed to improve worker safety in the fishing industry by reducing the occurrence of vessel disasters. In 2006, the United States Coast Guard (USCG) implemented a novel safety policy intervention for two fleets of freezer-trawlers and freezer-longliners in Alaska. The Alternate Compliance and Safety Agreement...
Greater sage-grouse (Centrocercus urophasianus; sage-grouse) are highly susceptible to infection with West Nile virus (WNV), with substantial mortality reported in wild populations and in experimentally infected birds. Although sage-grouse are hunted throughout much of their range, they have also recently been considered for protection under the Endangered Species Act. We...
Post-tsunami field surveys in the Minami-Soma exclusion zone in the Fukushima Prefecture were delayed for 15 months after the 2011 Tohoku tsunami. The area was subject to access restrictions until June 2012 due to high radiation levels caused by the meltdown at the Fukushima Dai-ichi Nuclear Power Plant. The distribution...
To quantify the postpeak residual capacity and
to gain insights into the load transfer mechanism of a shear
wall, nail connection tests were performed on salvaged
connections after a monotonic shear wall test loaded up
to peak load. Experimental results reveal that there is a
loss of strength in most...
Eddies can influence biogeochemical cycles through a variety of mechanisms, including the excitation of vertical velocities and the horizontal advection of nutrients and ecosystems, both around the eddy periphery by rotational currents and by the trapping of fluid and subsequent transport by the eddy. In this study, we present an...
Social vulnerability is often thought of as a culmination of social factors influencing the susceptibility of various groups to harm and govern their ability to respond. In an effort to identify communities that may be susceptible to social impacts from changes to fishery policies or fishing conditions, NOAA Fisheries is...
Transcription factors with multiple post-translational modifications (PTMs) are not uncommon, but comprehensive information on site-specific dynamics and interdependence is comparatively rare. Assessing dynamic changes in the extent of PTMs has the potential to link multiple sites both to each other and to biological effects observable on the same time scale....
A majority of the world’s largest net-based fisheries target planktivorous forage fish that serve as a critical trophic link between the plankton and upper-level consumers such as large predatory fishes, seabirds, and marine mammals. Because the plankton production that drives forage fish also drives jellyfish production, these taxa often overlap...
Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species’ threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that...
Infestation by onion thrips, Thrips tabaci Lindeman, was determined on transplants of onion (Allium cepa L.) received in Colorado during March and April from out-of-state sources (Imperial Valley, CA; near Phoenix, AZ; and southern Texas) during 2004 to 2008. In the 5 years of the study, 50 to 100% of...
Automated sound broadcast systems have been used to address a variety of ecological questions, and show great potential as a management tool. Such systems need to be reliable because treatments are often applied in the absence of a human observer and system failure can cause methodological ambiguity. During the breeding...
One key responsibility of leaders involves crafting and communicating two types of messages—visions and values—that help followers understand the ultimate purpose of their work. Although scholars have long considered how leaders communicate visions and values to establish a sense of purpose, they have overlooked how these messages can be used...
Fisheries oceanography is the study of ecological relationships between fishes and the dynamics of their marine environments and aims to characterize the physical, chemical, and biological factors that affect the recruitment and abundance of harvested species. A recent push within the fisheries management community is toward ecosystem-based management. Here, we...
Sea-level rise during the last deglaciation and through the Holocene was influenced by deformational, gravitational, and rotational effects (henceforth glacial isostatic adjustment, GIA) that led to regional departures from eustasy. Deglacial sea-level rise was particularly variable spatially in areas adjacent to the Cordilleran and Laurentide Ice Sheets. Such regional variability...
Studies were conducted to assess glacial acetic acid (GAA) with various host plant volatiles (HPVs) and the sex pheromone, (E,E)-8, 10-dodecadien-1-ol, of codling moth, Cydia pomonella (L), as lures in traps for tortricid pests that often co-occur in tree fruits in the western United States. In addition to codling moth,...
In recent work, Andrews, Chan, and Kim extend a result of Garvan about even rank and crank moments of partitions to positive moments. In a similar fashion we extend a result of Mao about even rank moments of overpartitions. We investigate positive Dyson-rank, M₂-rank, first residual crank, and second residual...
Translocation experiments, in which researchers displace animals and then monitor their movements to return home, are commonly used as tools to assess functional connectivity of fragmented landscapes. Such experiments are purported to have important advantages of being time efficient and of standardizing ‘‘motivation’’ to move across individuals. Yet, we lack...
Direct behavioral observations of multiple free-ranging animals over long periods of time and large geographic areas is prohibitively difficult. However, recent improvements in technology, such as Global Positioning System (GPS) collars equipped with motion-sensitive activity monitors, create the potential to remotely monitor animal behavior. Accelerometer-equipped activity monitors quantify animal motion...
We show that the transmission of a terahertz (THz) pulse through single-layer graphene is strongly
nonlinear. As the peak electric field of the THz pulse exceeds 50 kV/cm, the graphene becomes
increasingly transparent to the THz radiation. When field strength reaches 800 kV/cm, the increased
transparency corresponds to a two-fold...
Mechanical property degradation due to the disorder-order phase transformation is of potential concern for alloys based on the Ni-Cr binary system, particularly in nuclear power applications, where component lifetimes can exceed 80 years. In the present research, a disorder-order phase transformation has been studied in the Ni-33 at.% Cr model...
Large-scale poisoning events are common to scavenging bird species that forage communally, many of which are in decline. To reduce the threat of poisoning and compensate for other persistent threats, management, including supplemental feeding, is ongoing for many reintroduced and endangered vulture populations. Through a longitudinal study of lead exposure...