The safety of coastal infrastructure has been a concern after the Indian Ocean Tsunami in 2004 and the Great East Japan Tsunami in 2011. The western coast of the United States is also exposed to tsunami hazards due to the Cascadia subduction zone. Therefore, it is critical to design coastal...
Policy and research have increased attention in K12 mathematics education on core mathematical practices such as argumentation, justification, and proof, that are central to students learning and doing mathematics. One reason for this increased focus is the empirical evidence that engaging students in mathematical practices provide more equitable opportunities for...
A unique microreactor-assisted nanomaterial synthesis and printing process was studied for the fabrication of patterned metal oxide nanostructured thin films. The process uses a continuous flow microreactor to control and generate a reactive chemical flux that was transported to a patterned microfluidic channel. The microreactor-assisted nanomaterial synthesis process can generate...
Vortical structures are the driving mechanism of transition to turbulence in porous media requiring adequately resolved observations along with analysis of the scale and energy of flow within the pores. Of specific interest is to understand the vortex dynamics, energy, and turbulent mixing and transport properties in the scale of...
Biodiversity loss is of global concern, and is due in part to deforestation and high consumer demand for wood and wood products. The neotropical tree species Cedrela odorata (“Spanish cedar” or “cedro”) is economically valuable for its wood and faces threats of overexploitation. Due to strong similarities in wood features...
The bioavailability of chemical compounds in the marine environment fundamentally influences the growth and physiology of microorganisms. Organic and inorganic chemicals that are produced by some marine plankton can be consumed by other plankton for energy production, growth, or to initiate essential physiological processes. Cultures of the diatom Thalassiosira pseudonana,...
Racehorses are elite athletes that undergo repetitive stresses from jogging, cantering, and galloping exercises, and there is significant evidence that the majority of racehorse musculoskeletal injuries are due to repetitive stress or overuse. Musculoskeletal injuries have negative consequences on the racing industry through the loss of use or death of...
The number of deaths by suicide each year in the United States is rising. Men, women, and people of all ages die by suicide at high rates. Someone diagnosed with anorexia or bulimia is at significantly greater risk of completing or attempting suicide, making clear the importance of understanding how...
The ubiquity of high quality video and proliferation of mobile devices has contributed to an unprecedented rise in video consumption. HTTP, in conjunction with adaptive streaming, has become the de facto mechanism for delivering the vast majority of video as it readily caters to heterogeneous networks and devices. This dissertation...
The vertical propagation of Coastal Trapped Waves (CTWs) due to subsurface ridges is explored with the help of linear numerical and analytical models. Results show that submerged ridges projecting from the shoreline can scatter a horizontally propagating single baroclinic mode Kelvin wave into both upward and downward propagating Kelvin wave...
Pseudomonas is a diverse, ubiquitous, and widely studied genus of bacteria. As Pseudomonas species occupy a wide range of niches in the ecosystem, they have made remarkable biological impacts. Better understanding of Pseudomonas biology, genetic diversity, and functional interactions with other organisms and the environment will provide valuable insights into...
In this dissertation, we explored multiple coding techniques to reduce energy consumption, improve performance, and secure wireless sensor networks specifically and ad-hoc networks in general. With the introduction of Internet of Things (IoT) and 5G technologies, wireless sensor networks are quickly emerging as an important and key technology in the...
During the peripartum period (3 weeks before through 3 weeks after calving, a.k.a. “transition”), high producing dairy cows experience, among others, , oxidative stress and immune suppression that compromise performance and increased incidence of diseases.Among trace minerals, supplementation of Selenium (Se) can help to improve the transition by enhancing glutathione...
Human alteration of natural landscapes leads to biodiversity loss, often from a combination of area effects and fragmentation effects. Smaller habitat patches support fewer species than large ones and incur additional consequences from isolation. Efforts to preempt biodiversity loss from insular habitat fragments are complicated by individualistic species responses and...
This dissertation focuses on the application of diatom frustules, the biosilica shell of an algae possessing physical and photonic properties capable of enhancing optical signals, for the enhancement of optical sensing. In this work, we incorporate diatom frustules into biosensors for signal enhancement and improved target molecule detection. The potential...
A carefully calibrated primitive-equation model from 41°N to 48°N is used to study the poleward undercurrent off the US west coast. Chapter 2 describes poleward flow over the slope from Eulerian and Lagrangian perspectives. The model is robust, in the sense of several characteristics being qualitatively consistent with observational and...
Implementing multicomponent diffusion in numerical combustion studies is computationally expensive due to the challenges involved in computing diffusion coefficients. As a result, mixture-averaged diffusion treatments or simpler methods are used to avoid these costs. However, the accuracy and appropriateness of the mixture-averaged diffusion model has not been verified for three-dimensional...
Foliar fungi – pathogens, endophytes, epiphytes – form taxonomically diverse communities that affect plant health and productivity. The composition of foliar fungal communities is variable at spatial scales both small (e.g., individual plants) and large (e.g., continents). However, few studies have focused on how environmental factors and host plant traits...
Drought events have been shown to impact species distributions and are predicted to increase in frequency as the climate changes. As this occurs, ecologists predict species distributions will shift dependent upon species ability to track climate. These shifts in species distribution are expected to be particularly acute in arid and...
Metal-insulator-metal (MIM) and dual-insulator MIM (MIIM) devices are used in rectennas, hot-electron transistors, single electron transistors, resistive random access memory (RRAM), and capacitors. The performance of these devices relies heavily on the energy barrier height at each metal-insulator interface. Thus, determination of the in-situ electron energy barrier at each interface...
Ecological communities are connected in space and time through the transfer of energy, materials, and organisms, together known as ecological subsidies. These ecological subsidies can have substantial effects on community structure, function, and services, especially when the connections are between communities with contrasting productivity. At the ocean-land interface, low productivity...
The National Park Service has a dual mission of providing public access to exceptional natural resources, but in a manner such that these resources are left “unimpaired for the enjoyment of future generations.” Human activities in parks undoubtedly affect wildlife, but the degree to which such activities cause impairment is...
Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
Engineering capstone projects are intended as a bridge from school to professional practice in which students work in teams to use learned knowledge and skills to complete real-world engineering projects. However, while the majority of time in many undergraduate programs is devoted to development of technical knowledge and skills, there...
Structural Health Monitoring (SHM) is known as the process of implementation of damage detection and characterization strategy. The method is widely used in modern critical equipment to minimize the risk of failures. While a significant effort has been devoted by researchers for the detection of faults in situations including periodic...
Our goal is to build a system to model the RNA sequences that reveals their structural information by using efficient dynamic programming algorithms and deep learning approaches. We aim to 1) achieve linear-time for RNA secondary structure prediction based on existing minimum free energy models; 2) utilize deep neural networks...
This dissertation is concerned with the behavior of sulfur in intermediate-silicic arc magmas associated with subduction at convergent margins. In particular it focusses on oxidized, sulfur-rich magmas, the conditions at which they might reach sulfate saturation, and implications of sulfate saturation. It is divided into an investigation of natural samples...
Cell migration is fundamental for physiological processes such as immune re-sponses, wound healing and development. It is also a critical characteristic of metastatic cancer cells. An extensive amount of studies have focused on 2D sub-strates in order to understand the mechanism of cancer metastasis. However, much less is known about...
Oregon produces 99% US hazelnuts (Corylus avellana L.), occupying 3% world production. To ensure the quality and food safety of hazelnuts (inshells or kernels), industry and federal standards require freshly harvested nuts to be cleaned and dried to reach a final moisture content (MC) of inshells < 10%, MC of...
Metal-oxo clusters can be described as soluble pieces of metal-oxide frameworks. Currently, metal-oxo clusters are being considered as solution-based precursors for extreme ultraviolet (EUV, 13.5 nm) photoresist materials, which are a crucial component in the fabrication of microelectronic devices. Two different photoresist precursor systems have been investigated – alkyltin clusters...
The act of accessing food is embedded within various systems of power. This dissertation problematizes our understanding of food access for vulnerable populations by making explicit ways that social constructions, including power, affect food access for vulnerable populations. This is accomplished across three manuscripts. The first manuscript presents textual analysis...
Atmospheric fine particulate matter (PM2.5) has been linked to the death of 7 million people per year around the planet. The organic portion of PM2.5 is responsible for increases in oxidative stress, inflammation, mutation and carcinogenesis. Anthropogenic activity releases more organic material into the atmosphere, and has increased the amount...
Teamwork has become a popular operational strategy applied as part of workforce management plans in manufacturing and service industries. Teamwork has been commonly used in organizations to pursue different goals such as increase business operations agility, boost company productivity, improve quality in operations, increase company flexibility, promote collaborative learning, hasten...
Using plant fibers as a potential renewable material to substitute for glass fibers in fiber-reinforced polymer composites has been growing since the late 1990s. Due to high demand, there has been a shift towards ‘green concept’ material in many applications. Numerous secondary plant fibers have been explored as a source...
Exploring bioactive natural products has contributed largely to clinically approved drugs we have been using over the last 100 years. Especially among the anti-infective drugs, around 70% of currently used antibiotics were discovered or derived from microbial secondary metabolites, among them compounds like vancomycin, chloramphenicol, and erythromycin. Facing the unavoidable...
Somatic growth variation manifests from the cumulative effects of a suite of biological, ecological, and environmental processes and can have profound effects on individual fitness and species population dynamics. As ectotherms whose growth dynamics are greatly influenced by environmental factors, sea turtles display considerable variation in somatic growth within and...
Many database users are not familiar with formal query languages, the concept of schema, or the exact content of their database. Thus, it is challenging for these users to formulate their information needs over semi-structured and structured databases. To address this problem, researchers have proposed usable query interfaces over which...
Biogeochemical mechanisms employed by key organisms, or symbiotic associations of organisms, transform the function and structure of their environment through processes recognized as ecosystem engineering. This dissertation seeks to investigate organism-ecosystem interactions that serve globally significant ecological functions in marine systems and impact how systems respond to environmental change. Using...
The atmospheric detection of four radioxenon isotopes (131mXe, 133mXe, 133Xe, and 135Xe) released during a nuclear detonation is a key tool utilized by the Comprehensive Nuclear-Test-Ban Treaty Organization (CTBTO) to identify clandestine nuclear weapon testing activity. These radioxenon isotopes all decay via the near-simultaneous release of an electron and a...
We present a deterministic spectral method to predict equilibrium temperature distributions, heat flux, and thermal conductivity in homogeneous and heterogeneous media. We solve the Boltzmann transport equation in a second order spatial, self-adjoint angular flux formulation. We implemented this method into the radiation transport code Rattlesnake, built using the MOOSE...
Western juniper (Juniperus occidentalis) encroachment has been associated with negative ecological and hydrological consequences including reductions in herbaceous production and diversity, deterioration for wildlife habitat, and higher erosion and runoff potentials. As a result, western juniper removal is a common and accepted rangeland management practice. Although studies evaluating the ecological...
Radiation therapy is a sophisticated complex process. Systematic methods are needed to quantitatively evaluate the quality of a complex process and hence radiation therapy treatments. An ideal result for a complex process must be established to determine if the complex process is completed acceptably. For radiation therapy, this can be...
This dissertation presents two qualitative studies investigating expert trauma counselors’ experiences of clinical decision-making and countertransference. Chapter 2, Acutely Alert: A Grounded Theory of Clinical Decision-Making Processes of Expert Trauma Counselors addresses the research question, what are the clinical decision-making experiences and processes of expert trauma counselors? Chapter 3, Exploring...
The following dissertation consists of six sections: a general introduction, three manuscripts, a general conclusion, and an overall bibliography. The three manuscripts report on: (1) identifying genetic interactions in diverse germplasm developed during introgression of a major gene conferring resistance to stem rust (Puccinia graminis f. sp. tritici), (2) mapping...
The purpose of this dissertation is to convey research on counselors’ experience of administrative supervision. While research in counseling has given much attention to clinical supervision and the relationship between clinical supervisor and supervisee, it has not adequately attended to the important and influential role of administrative supervision and its...
Successive-approximation-register (SAR) analog-to-digital converters are popular for medium accuracy, medium speed and low power applications, such as in biomedical applications. They have low latency and simple architecture compared with ΔΣ ADCs. This is because of SAR ADCs’ binary searching scheme. Furthermore, SAR ADCs can apply oversampling and noise shaping schemes...
Existing strategies and policies have emphasized the need for cross-sector collaboration as a means for the forest sector to be more competitive. Cross-sector collaboration initiatives of forest sector companies with neighboring industries such as energy, chemicals, plastics, textiles, and packaging are gaining increasing attention as a necessary element for a...
Roadway departure crashes accounted for 18,275 fatal crashes in 2017 across the United States (Jones et al. 2017). Rumble strips (RS) provide audible and haptic interior alert when a vehicle is departing the roadway reducing run-off-the road crashes. Although inexpensive to install, and easy to maintain, RS are not installed...
Resilient water, food, and energy management strategies for an ever-growing population and changing environment depends on our understanding of water and carbon cycles from local to global scales. Fluxes of water and carbon are coupled by photosynthesis and plant transpiration cycles the largest fraction of terrestrial water from the land...
Metal-oxo clusters are discrete molecular metal-oxides. Most metals form numerous cluster compounds that can be ligated, unligated, charged or neutral, controlling their solubility in water and/or organic solvents. They are important species to study reaction pathways from the monomeric building units to the bulk metal oxides, and have many application...