Questions: Are traits related to the performance of plant species in restoration? Are the relationships between traits and performance consistent across the functional groups of annual forbs, perennial forbs, and grasses? Do the relationships between traits and performance depend on neighboring functional groups? Location: A former agricultural field, being restored...
Turbulent mixing of salt is examined in a shallow salt wedge estuary with strong fluvial and tidal forcing. A numerical model of the Merrimack River estuary is used to quantify turbulent stress, shear production, and buoyancy flux. Little mixing occurs during flood tides despite strong velocities because bottom boundary layer...
Wood and wood-based composites are being used extensively in single-family residential dwellings. Therefore, it is important to categorize their response when exposed to elevated temperatures for a sustained period of time. In fire-resistant design for wood structures, the main goal is to ensure that enough structural integrity is maintained, during...
The concept of sustainable resource management can be applied at multiple scales.
Monitoring is an essential component of sustainable natural resource management
schemes, and as we begin to confront the need to manage natural resources at the
global scale, the importance of monitoring at the global scale is also growing....
Research has found an upward trend in impulse buying in general, and impulse buying is frequently foreseen among mall shoppers. Impulse purchases account for over $4 billion in annual sales in the U.S. (Mogelonsky, 1998). Retailers have found that over 50 percent of mall shoppers purchase on impulse (Nichols et...
Thiamine diphosphate (vitamin B1) plays a fundamental role as an enzymatic cofactor in universal metabolic pathways including glycolysis, the pentose phosphate pathway, and the tricarboxylic acid cycle. In addition, thiamine diphosphate has recently been shown to have functions other than as a cofactor in response to abiotic and biotic stress...
This study examines the impact of two decades of neoliberal policy reform on food production and household livelihood security in three West African countries. The rice sectors in The Gambia, Côte d’Ivoire, and Mali are scrutinized as well as cotton and its relationship to sorghum production in Mali. Although market...
We present an atmospheric inverse modeling framework to constrain terrestrial biosphere CO₂ exchange processes at subregional scales. The model is operated at very high spatial and temporal resolution, using the state of Oregon in the northwestern United States as the model domain. The modeling framework includes mesoscale atmospheric simulations coupled...
Marine and terrestrial ecologists rarely exchange information, yet comparing research from both sides of the land–sea boundary holds great potential for improving our understanding of ecological processes. For example, by comparing the interaction between tiger sharks (Galeocerdo cuvier) and dugongs (Dugong dugon) to that between gray wolves (Canis lupus) and...
The spatial variability of turbulence and surface heat flux are examined for the case of small air-surface temperature difference and modest sea-surface temperature variability. As a result of nonlinearities in the bulk formula, the heterogeneity is predicted to shift the area-averaged heat flux toward more significant upward values compared to...
Intraexciton transitions in semiconductor quantum wells are modulated by strong and tunable few-cycle terahertz pulses. Time-resolved terahertz-pump and optical-probe measurements demonstrate that the 1s heavy-hole and light-hole exciton resonances undergo large-amplitude spectral modulations when the terahertz radiation is tuned near the 1s–2p intraexciton transition. The strong nonlinear optical transients exhibit...
Satellite observations have revealed a remarkably strong positive correlation between sea surface temperature (SST) and surface winds on oceanic mesoscales of 10–1000 km. Although SST influence on the atmosphere had previously been identified from several in situ observational studies, its widespread existence in regions of strong SST gradients throughout the...
Most of the kinetic energy of ocean circulation is contained in ubiquitous
mesoscale eddies. Their prominent signatures in sea surface height have rendered satellite
altimetry highly effective in observing global ocean eddies. Our knowledge of ocean eddy
dynamics has grown by leaps and bounds since the advent of satellite altimetry...
While the impacts of long-term climate change trends on glacier hydrology have received much attention, little has been done to quantify direct glacier runoff contributions to streamflow. This paper presents an approach for determining glacier runoff contributions to streamflow and estimating the effects of increased temperature and decreased glacier area...
Transacting siRNA (tasiRNA) biogenesis in Arabidopsis is initiated
by microRNA (miRNA) –guided cleavage of primary transcripts. In
the case of TAS3 tasiRNA formation, ARGONAUTE7 (AGO7)–
miR390 complexes interact with primary transcripts at two sites,
resulting in recruitment of RNA-DEPENDENT RNA POLYMERASE6
for dsRNA biosynthesis. An extensive screen for Arabidopsis mutants...
Corrections
18 Mar 2010: Shaman J, Pitzer VE, Viboud C, Grenfell BT, Lipsitch M (2010) Correction: Absolute Humidity and the Seasonal Onset of Influenza in the Continental United States. PLOS Biology 8(3): 10.1371/annotation/35686514-b7a9-4f65-9663-7baefc0d63c0.
15 Mar 2010: Shaman J, Pitzer VE, Viboud C, Grenfell BT, Lipsitch M (2010) Correction: Absolute Humidity...
Vailulu’u seamount is an active underwater volcano that marks the end of the Samoan hotspot trail (Hart et al., 2000). Vailulu’u has a simple conical morphology (Figure 1) with a largely enclosed volcanic crater at relatively shallow water depths, ranging from 590 m (highest point on the crater rim) to...
Recent analysis of 38 globally distributed paleoclimatic records covering Marine Isotope Stage 3 (MIS 3) 60–26 ka demonstrated that the two leading empirical orthogonal functions (EOFs) explaining the data are the Greenland ice-core signal (“northern” signal) and the Antarctic ice-core signal (“southern” signal). Here singular spectral analysis (SSA) is used...
Poly(ethylene glycol)-block-poly(aspartate-hydrazide) (PEG-p(Asp-Hyd)) was modified using either levulinic acid (LEV) or 4-acetyl benzoic acid (4AB) attached via hydrazone bonds. Paclitaxel (PTX) conjugated to the linkers formed PEG-p(Asp-Hyd-LEV-PTX) and PEG-p(Asp-Hyd-4AB-PTX). PEG-p(Asp-Hyd-LEV-PTX) and PEG-p(Asp-Hyd-4AB-PTX) assemble into unimodal polymeric micelles with diameters of 42 nm and 137 nm, respectively. PEG-p(Asp-Hyd-LEV-PTX) and PEG-p(Asp-Hyd-4AB-PTX) at...
This study examined relations among early family risk, children’s behavioral regulation at 54
months and kindergarten, and academic achievement in first grade using data on 1,298 children
from the National Institute of Child Health and Human Development (NICHD) Study of Early
Child Care and Youth Development. Family risk was indexed...
The effects of precommercial thinning on the understory vegetative cover of 16- to 18-year-old spruce–hemlock (Picea sitchensis (Bong.) Carrière – Tsuga heterophylla (Raf.) Sarg.) stands were studied in seven replicate areas over seven growing seasons postthinning. Vegetative cover was analyzed at the class level, but species-specific effects were examined in...
The Critical Depth Hypothesis formalized by Sverdrup in 1953 posits that
vernal phytoplankton blooms occur when surface mixing shoals to a depth shallower than a
critical depth horizon defining the point where phytoplankton growth exceeds losses. This
hypothesis has since served as a cornerstone in plankton ecology and reflects the...
Time‐dependent buoyant plumes form at the outflow of tidally dominated estuaries. When estuary discharge velocity exceeds plume internal wave speed c, a sharp front forms at the plume’s leading edge that expands from the time‐dependent source. Using observations of the Columbia River tidal plume from multiple tidal cycles we characterize...
A topic of recurring interest in ecological research is the degree to which
vegetation structure influences the distribution and abundance of species. Here we test the
applicability of remote sensing, particularly novel use of waveform lidar measurements, for
quantifying the habitat heterogeneity of a contiguous northern hardwoods forest in the...
New analyses of teleseismic body waves from moderate earthquakes in western Argentina demonstrate that active shortening of the Andean foreland occurs on reverse faults extending to 40–50 km depth. Existing crustal‐scale models of foreland deformation invoke thin‐skinned fault geometries, which root into an east‐dipping mid‐crustal décollement. Whereas thin‐skinned thrust sheets...
The method used to separate surface and internal tides ultimately defines properties such as internal‐tide generation and the depth structure of internal‐tide energy flux. Here, we provide a detailed analysis of several surface‐/internal‐tide decompositions over arbitrary topography. In all decompositions, surface‐tide velocity is expressed as the depth average of total...
Intercellular transport of viruses through cytoplasmic connections, termed plasmodesmata (PD), is essential for systemic infection in plants by viruses. Previous genetic and ultrastructural data revealed that the potyvirus cyclindrical inclusion (CI) protein is directly involved in cell-to-cell movement, likely through the formation of conical structures anchored to and extended through...
Shoreward propagating, mode 2 nonlinear waves appear sporadically in mooring records obtained off the coast of New Jersey in the summer of 2006. Individual mode 2 packets were tracked between two moorings separated by 1 km; however, packets could not be tracked between moorings separated by greater distances from one...
The backscattering properties of marine phytoplankton, which are assumed to vary widely with differences in size, shape, morphology and internal structure, have been directly measured in the laboratory on a very limited basis. This work presents results from laboratory analysis of the backscattering properties of thirteen phytoplankton species from five...
The typically sparse distribution of weather stations in mountainous terrain inadequately resolves temperature variability. Accordingly, high‐resolution gridding of climate data (for applications such as hydrological modeling) often relies on assumptions such as a constant surface temperature lapse rate (i.e., decrease of surface temperature with altitude) of 6.5°C km⁻¹. Using an...
A new dataset synthesizes in situ and remote sensing observations from research ships deployed to the southeastern tropical Pacific stratocumulus region for 7 years in boreal fall. Surface meteorology, turbulent and radiative fluxes, aerosols, cloud properties, and rawinsonde profiles were measured on nine ship transects along 20°S from 75° to...
We estimate the depth of the 120°C isotherm by constructing crustal thermal gradients based on theoretical and observed conductive heat flux as a function of lithospheric age. We chose the 120°C isotherm because it is close to the upper limit for prokaryotic life, and therefore, the isotherm approximates the maximum...
Mobile customers are being tracked and profiled by behavioural advertisers to be able to send them personalized advertising. This process involves data mining consumer databases containing personally-identifying or anonymous data and it raises a host of important privacy concerns. This article, the first in a two part series on consumer...
Transgenic down-regulation of the Pt4CL1 gene family encoding 4-coumarate:coenzyme A ligase (4CL) has been reported as a
means for reducing lignin content in cell walls and increasing overall growth rates, thereby improving feedstock quality for
paper and bioethanol production. Using hybrid poplar (Populus tremula 3 Populus alba), we applied this...
We have developed a coupled 3‐D pan‐Arctic biology/sea ice/ocean model to investigate the impact of declining Arctic sea ice on the marine planktonic ecosystem over 1988–2007. The biophysical model results agree with satellite observations of a generally downward trend in summer sea ice extent during 1988–2007, resulting in an increase...
Endogenous small RNAs (endo-siRNAs) interact with Argonaute (AGO) proteins to mediate
sequence-specific regulation of diverse biological processes. Here, we combine deep-sequencing and
genetic approaches to explore the biogenesis and function of endo-siRNAs in C. elegans. We describe
conditional alleles of the dicer-related helicase, drh-3, that abrogate both RNA interference and...
Mobile customers are increasingly being tracked and profiled by behavioural advertisers to enhance delivery of personalized advertising. This type of profiling relies on automated processes that mine databases
containing personally-identifying or anonymous consumer data, and it raises a host of significant concerns about
privacy and data protection. This second article...
Library faculty are often tenure track, requiring a record of significant publishing and service before achieving tenure. However, meaningful tools and methods for evaluating the scholarship of librarianship frequently fall short of providing an accurate picture of the scholarship of any particular candidate. The authors conducted a case study analyzing...
Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with...
Oregon State University Libraries piloted a one-year ILL purchase on demand service beginning in February 2009. An online survey was used to measure patron satisfaction and determine future borrowing and recommendation behavior. These results, along with patron comments, were used to explore future success of the service and ways to...
Remote sensing offers local, regional and global observations of seasonal snow, providing key information on snowpack processes. This brief review highlights advancements in instrumentation and analysis techniques that have been developed over the past decade. Areas of advancement include improved algorithms for mapping snow-cover extent, snow albedo, snow grain size,...
Acceptance of marine protected areas (MPAs) as fishery and conservation tools has been hampered by lack of direct evidence that MPAs successfully seed unprotected areas with larvae of targeted species. For the first time, we present direct evidence of large-scale population connectivity within an existing and effective network of MPAs....
Current projections of the oceanic response to anthropogenic climate forcings are uncertain. Two key sources of these uncertainties are (1) structural errors in current Earth system models and (2) imperfect knowledge of model parameters. Ocean tracer observations have the potential to reduce these uncertainties. Previous studies typically consider each tracer...
Current projections of the oceanic response to anthropogenic climate forcings are uncertain. Two key sources of these uncertainties are (1) structural errors in current Earth system models and (2) imperfect knowledge of model parameters. Ocean tracer observations have the potential to reduce these uncertainties. Previous studies typically consider each tracer...
Nitrogen (N) fixation by specialized microorganisms (diazotrophs) influences global plankton productivity because it provides the ocean with most of its bio-available N. However, its global rate and large-scale spatial distribution is still regarded with considerable uncertainty. Here we use a global ocean nitrogen isotope model, in comparison with δ15NO3 observations,...
Internal‐tide generation is usually predicted from local topography, surface tides, and stratification. However, internal tides are often observed to be unrelated to local spring‐neap forcing, appearing intermittently in 3–5 day bursts. Here we suggest a source of this intermittency by illustrating how remotely‐generated shoaling internal tides induce first‐order changes in...
The range of verification problems that can be solved with logic model checking tools has increased significantly in the last few decades. This increase in capability is based on algorithmic advances and new theoretical insights, but it has also benefitted from the steady increase in processing speeds and main memory...
The Oregon State University Extension Service engages the people of Oregon with research based knowledge and education that strengthen communities and economies, sustain natural resources, and promote healthy families and individuals. This document gives a 100-year history of OSU Extension.
Connectivity and larval dispersal is explored off the Oregon coast during the summer upwelling season of 2001 using numerical ocean circulation simulations. The study region, with strong wind-driven currents and variable topography, is modeled using the Regional Ocean Modeling System (ROMS) forced by the Coupled Ocean Atmosphere Mesoscale Prediction System....