Cross-laminated timber (CLT) is an attractive building material because it is renewable, promotes fast installation, and possesses a high strength-to-weight ratio. The use of CLT in seismic applications has become increasingly common with the development of post-tensioned CLT rocking wall lateral force resisting systems (LFRS). The CLT pier-and-spandrel system designed,...
During the peripartum period (3 weeks before through 3 weeks after calving, a.k.a. “transition”), high producing dairy cows experience, among others, , oxidative stress and immune suppression that compromise performance and increased incidence of diseases.Among trace minerals, supplementation of Selenium (Se) can help to improve the transition by enhancing glutathione...
Human alteration of natural landscapes leads to biodiversity loss, often from a combination of area effects and fragmentation effects. Smaller habitat patches support fewer species than large ones and incur additional consequences from isolation. Efforts to preempt biodiversity loss from insular habitat fragments are complicated by individualistic species responses and...
The veteran population, about 18.5 million Americans in 2016 (US Census Bureau, 2018), is particularly at risk for mental health problems. As an example, the suicide rate of veterans is about one and a half times higher than the general population (US Department of Veteran Affairs [DVA], 2018b). Another group...
This dissertation focuses on the application of diatom frustules, the biosilica shell of an algae possessing physical and photonic properties capable of enhancing optical signals, for the enhancement of optical sensing. In this work, we incorporate diatom frustules into biosensors for signal enhancement and improved target molecule detection. The potential...
A carefully calibrated primitive-equation model from 41°N to 48°N is used to study the poleward undercurrent off the US west coast. Chapter 2 describes poleward flow over the slope from Eulerian and Lagrangian perspectives. The model is robust, in the sense of several characteristics being qualitatively consistent with observational and...
Implementing multicomponent diffusion in numerical combustion studies is computationally expensive due to the challenges involved in computing diffusion coefficients. As a result, mixture-averaged diffusion treatments or simpler methods are used to avoid these costs. However, the accuracy and appropriateness of the mixture-averaged diffusion model has not been verified for three-dimensional...
Foliar fungi – pathogens, endophytes, epiphytes – form taxonomically diverse communities that affect plant health and productivity. The composition of foliar fungal communities is variable at spatial scales both small (e.g., individual plants) and large (e.g., continents). However, few studies have focused on how environmental factors and host plant traits...
At its inception in 1946, the United States’ National School Lunch Program (NSLP) was promoted as a success story; a boon for families navigating poverty, a means of buoying food prices by absorbing farm surplus, and a treatment for hunger in some of our country’s most vulnerable populations. Government subsidies...
Drought events have been shown to impact species distributions and are predicted to increase in frequency as the climate changes. As this occurs, ecologists predict species distributions will shift dependent upon species ability to track climate. These shifts in species distribution are expected to be particularly acute in arid and...
Solar energy systems purchased in the United States have increased tenfold since 2010. As solar photovoltaics (PV) markets expand, solar energy becomes more affordable. In the last five years, the price of solar has decreased by 40 percent. Despite solar PV becoming more affordable and rising consumer demand, between 50...
Metal-insulator-metal (MIM) and dual-insulator MIM (MIIM) devices are used in rectennas, hot-electron transistors, single electron transistors, resistive random access memory (RRAM), and capacitors. The performance of these devices relies heavily on the energy barrier height at each metal-insulator interface. Thus, determination of the in-situ electron energy barrier at each interface...
This study utilizes probabilistic surrogate modeling techniques around San Diego Bay with an emphasis on naval infrastructure and operations to evaluate the impact of five global mean sea level rise scenarios (GMSLR). Spatially continuous total water levels (TWLs) are combined with a digital elevation model (DEM) of the region to...
A growing body of literature associates transgender and gender non-conforming (TGNC) identity with adverse mental and emotional health outcomes. Only a handful of studies have been conducted using population-based samples of adolescents to study mental health outcomes in TGNC youth (e.g., Eisenberg et al., 2017; Perez-Brumer, Day, Russell, & Hatzenbuehler,...
Ecological communities are connected in space and time through the transfer of energy, materials, and organisms, together known as ecological subsidies. These ecological subsidies can have substantial effects on community structure, function, and services, especially when the connections are between communities with contrasting productivity. At the ocean-land interface, low productivity...
Wave energy is a potentially important renewable clean source of energy that can help solve the energy demand throughout the world. A great deal of research has been conducted in the last few decades and it is now reaching the point of full implementation. In order to compete with other...
As a general solution to the problem of managing structural and content variability in relational databases, in previous work we have introduced the Variational Database Management System (VDBMS). VDBMS consists of a representation of a variational database (VDB) and a corresponding typed query language (v-query). However, since this is a...
The National Park Service has a dual mission of providing public access to exceptional natural resources, but in a manner such that these resources are left “unimpaired for the enjoyment of future generations.” Human activities in parks undoubtedly affect wildlife, but the degree to which such activities cause impairment is...
The United States generates over 70 million tonnes of wood waste annually, with over 27 million tonnes still available for recovery. Current recycling rates for wood waste are in the range of 10% to 15%, which is much lower than other common building materials and indicative of an underutilized resource....
Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
RNA structure prediction is a challenging problem, especially with pseudoknots. Recently, there has been a shift from the classical minimum free energy-based methods (MFE) to partition function-based ones that assemble structures based on base-pairing probabilities. Two typical examples of the latter group are the popular maximum expected accuracy (MEA) method...
Engineering capstone projects are intended as a bridge from school to professional practice in which students work in teams to use learned knowledge and skills to complete real-world engineering projects. However, while the majority of time in many undergraduate programs is devoted to development of technical knowledge and skills, there...
Structural Health Monitoring (SHM) is known as the process of implementation of damage detection and characterization strategy. The method is widely used in modern critical equipment to minimize the risk of failures. While a significant effort has been devoted by researchers for the detection of faults in situations including periodic...
In recent decades, watershed managers have increasingly turned to collaborative models of governance for water resource planning in the Western United States. By involving a wide array of stakeholders in decision-making, these place-based partnerships promise many benefits: better understanding of local needs, increased public support, and reduced conflict. Yet, many...
Our goal is to build a system to model the RNA sequences that reveals their structural information by using efficient dynamic programming algorithms and deep learning approaches. We aim to 1) achieve linear-time for RNA secondary structure prediction based on existing minimum free energy models; 2) utilize deep neural networks...
This dissertation is concerned with the behavior of sulfur in intermediate-silicic arc magmas associated with subduction at convergent margins. In particular it focusses on oxidized, sulfur-rich magmas, the conditions at which they might reach sulfate saturation, and implications of sulfate saturation. It is divided into an investigation of natural samples...
Cell migration is fundamental for physiological processes such as immune re-sponses, wound healing and development. It is also a critical characteristic of metastatic cancer cells. An extensive amount of studies have focused on 2D sub-strates in order to understand the mechanism of cancer metastasis. However, much less is known about...
Dual Language Learners (DLLs) represent a substantial subpopulation in United States preschool programs (Aikens, Kinas, Malone, Tarullo, & Harding, 2017). DLLs often come from low socio-economic backgrounds and encounter barriers to academic success (National Academies of Science, 2017; Thomas & Collier, 2002). One consistent predictor of academic success is executive...
Using robotics in education allows students to become familiar with multiple topics in science, technology, engineering, and mathematics (STEM). With the use of robotic educational tools in the 8th – 12th grade classrooms, such as Sphero, Anki Cozmo, and Lego Mindstorms, few devices allow students to build the robots’ electrical...
Oregon produces 99% US hazelnuts (Corylus avellana L.), occupying 3% world production. To ensure the quality and food safety of hazelnuts (inshells or kernels), industry and federal standards require freshly harvested nuts to be cleaned and dried to reach a final moisture content (MC) of inshells < 10%, MC of...
Metal-oxo clusters can be described as soluble pieces of metal-oxide frameworks. Currently, metal-oxo clusters are being considered as solution-based precursors for extreme ultraviolet (EUV, 13.5 nm) photoresist materials, which are a crucial component in the fabrication of microelectronic devices. Two different photoresist precursor systems have been investigated – alkyltin clusters...
The act of accessing food is embedded within various systems of power. This dissertation problematizes our understanding of food access for vulnerable populations by making explicit ways that social constructions, including power, affect food access for vulnerable populations. This is accomplished across three manuscripts. The first manuscript presents textual analysis...
Atmospheric fine particulate matter (PM2.5) has been linked to the death of 7 million people per year around the planet. The organic portion of PM2.5 is responsible for increases in oxidative stress, inflammation, mutation and carcinogenesis. Anthropogenic activity releases more organic material into the atmosphere, and has increased the amount...
According to the Girls’ Opportunity Index formulated by Lenhardt, et al, (2016), Brazil is the least favorable country in South America to succeed being born a woman, ranking the 102nd position out of 144 analyzed countries. This macro-level statistic speaks to the present landscape of gender inequality, shaped since the...
Teamwork has become a popular operational strategy applied as part of workforce management plans in manufacturing and service industries. Teamwork has been commonly used in organizations to pursue different goals such as increase business operations agility, boost company productivity, improve quality in operations, increase company flexibility, promote collaborative learning, hasten...
Using plant fibers as a potential renewable material to substitute for glass fibers in fiber-reinforced polymer composites has been growing since the late 1990s. Due to high demand, there has been a shift towards ‘green concept’ material in many applications. Numerous secondary plant fibers have been explored as a source...
Vibration of nuclear fuel rods is an area of significance for the long-term safe operation of any nuclear power plant. One mechanism of vibration, flow induced vibration (FIV), must be quantified when designing a new core, such as a sodium fast reactor which employs helically-wrapped wire spacers. Experimental work undertaken...
Nitrogen is a crucial nutrient required by yeast to successfully complete alcoholic fermentation. In particular, the concentration of yeast assimilable nitrogen (YAN) influences fermentation kinetics and the production of a range of volatile aroma compounds, both desirable and undesirable. YAN is naturally present in the grape, but producers can boost...
Exploring bioactive natural products has contributed largely to clinically approved drugs we have been using over the last 100 years. Especially among the anti-infective drugs, around 70% of currently used antibiotics were discovered or derived from microbial secondary metabolites, among them compounds like vancomycin, chloramphenicol, and erythromycin. Facing the unavoidable...
Somatic growth variation manifests from the cumulative effects of a suite of biological, ecological, and environmental processes and can have profound effects on individual fitness and species population dynamics. As ectotherms whose growth dynamics are greatly influenced by environmental factors, sea turtles display considerable variation in somatic growth within and...
Many database users are not familiar with formal query languages, the concept of schema, or the exact content of their database. Thus, it is challenging for these users to formulate their information needs over semi-structured and structured databases. To address this problem, researchers have proposed usable query interfaces over which...
Biogeochemical mechanisms employed by key organisms, or symbiotic associations of organisms, transform the function and structure of their environment through processes recognized as ecosystem engineering. This dissertation seeks to investigate organism-ecosystem interactions that serve globally significant ecological functions in marine systems and impact how systems respond to environmental change. Using...
The atmospheric detection of four radioxenon isotopes (131mXe, 133mXe, 133Xe, and 135Xe) released during a nuclear detonation is a key tool utilized by the Comprehensive Nuclear-Test-Ban Treaty Organization (CTBTO) to identify clandestine nuclear weapon testing activity. These radioxenon isotopes all decay via the near-simultaneous release of an electron and a...
We present a deterministic spectral method to predict equilibrium temperature distributions, heat flux, and thermal conductivity in homogeneous and heterogeneous media. We solve the Boltzmann transport equation in a second order spatial, self-adjoint angular flux formulation. We implemented this method into the radiation transport code Rattlesnake, built using the MOOSE...
Western juniper (Juniperus occidentalis) encroachment has been associated with negative ecological and hydrological consequences including reductions in herbaceous production and diversity, deterioration for wildlife habitat, and higher erosion and runoff potentials. As a result, western juniper removal is a common and accepted rangeland management practice. Although studies evaluating the ecological...
Radiation therapy is a sophisticated complex process. Systematic methods are needed to quantitatively evaluate the quality of a complex process and hence radiation therapy treatments. An ideal result for a complex process must be established to determine if the complex process is completed acceptably. For radiation therapy, this can be...
This dissertation presents two qualitative studies investigating expert trauma counselors’ experiences of clinical decision-making and countertransference. Chapter 2, Acutely Alert: A Grounded Theory of Clinical Decision-Making Processes of Expert Trauma Counselors addresses the research question, what are the clinical decision-making experiences and processes of expert trauma counselors? Chapter 3, Exploring...
Myxozoans are an enigmatic group of obligately parasitic, microscopic cnidarians. They diverged from their free-living relatives over 600 million years ago and have highly reduced genomes. However, they have retained nematocyst stinging cells which characterize the phylum Cnidaria. Free-living cnidarians utilize this cellular weaponry for defense and predation whereas the...
The following dissertation consists of six sections: a general introduction, three manuscripts, a general conclusion, and an overall bibliography. The three manuscripts report on: (1) identifying genetic interactions in diverse germplasm developed during introgression of a major gene conferring resistance to stem rust (Puccinia graminis f. sp. tritici), (2) mapping...
Lead (Pb), copper (Cu), and zinc (Zn) are known to have detrimental effects on aquatic and terrestrial ecosystems, and to human health both in rural and urban areas. Heavy metal contamination enters stormwater by atmospheric deposition and by the collection of surface particles during overland flow. Stormwater runoff in urban...