As global climate changes over the next century, forest productivity is expected to change as well. Using PRISM climate and productivity data measured on a grid of 3356 plots, we developed a simultaneous autoregressive (SAR) model to estimate the impacts of climate change on potential productivity of Pacific Northwest (PNW)...
Given the fundamental importance of xylem safety and efficiency for plant survival and fitness, it is not surprising that these are among the most commonly studied features of hydraulic architecture. However, much remains to be learned about the nature and universality of conflicts between hydraulic safety and efficiency. Although selection...
Genetic information for male and female hop accessions is limited, hampering
parental selection to maximize offspring productivity. Our objective
was to determine whether amplified fragment length polymorphism (AFLP)-derived genetic distance (GD[subscript mm]) estimates and coancestry estimates from
pedigrees (GS[subscript ped]) between parental pairs could be used to predict offspring
performance....
The coded wire tag (CWT) database contains detailed information on millions of Pacific salmon
Oncorhynchus spp. released from hatcheries or smolt traps and recovered in the north Pacific Ocean and its tributaries. I used this data set to examine the spatial and temporal variation in the marine distributions of 77...
The amounts of treated wood present at a wood recycling center in western Oregon were surveyed over a 10-year period. Treated wood was found at 106 of 112 inspections, but the levels never exceeded 2 percent of the volume present. The amount of treated wood averaged 0.15 percent of the...
In 2002, oxygen isotope ratios of water (H2
18O/H2
16O), dissolved barium, and salinity were
measured in surface waters around northern North America to identify freshwater sources and to
provide a large-scale background for interpretation of regional inputs and processes. Oxygen isotope
ratios showed that precipitation, river runoff, and sea...
The effects of surface wind speed and direction gradients on midlatitude surface vorticity and divergence fields associated with mesoscale sea surface temperature (SST) variability having spatial scales of 100–1000 km are investigated using vector wind observations from the SeaWinds scatterometer on the Quick Scatterometer (QuikSCAT) satellite and SST from the...
The immune toxicity of the ubiquitous environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), commonly referred to as dioxin, has been studied for over 35 years but only recently has the profound immune suppression induced by TCDD exposure been linked to induction of regulatory T cells (Tregs). The effects of TCDD are mediated through...
Of 14 transgenic poplar genotypes (Populus tremula × Populus alba) with antisense 4-coumarate:coenzyme A ligase that were grown in the field for 2 years, five that had substantial lignin reductions also had greatly reduced xylem-specific conductivity compared with that of control trees and those transgenic events with small reductions in...
The literature on ITQs as a fishery management tool predominantly
assumes that all input prices are parametric. In many if not most fisheries,
however, fishing crews are paid a share of the profits. The paper explores
the efficiency of ITQ markets when crews are remunerated under a share
system. Efficiency...
This chapter describes a mass spectrometry-based strategy that facilitates the unambiguous identification and characterization of proteins modified by lipid peroxidation-derived 2-alkenals. The approach employs a biotinylated hydroxyl amine derivative as an aldehyde/keto reactive probe in conjunction with selective enrichment and tandem mass spectrometric analysis. Methodological details are given for model...
Flowering is the primary trait affected by ambient
temperature changes. Plant microRNAs
(miRNAs) are small non-coding RNAs playing an
important regulatory role in plant development. In
this study, to elucidate the mechanism of
flowering-time regulation by small RNAs, we
identified six ambient temperature-responsive
miRNAs (miR156, miR163, miR169, miR172, miR398
and...
The dynamical response of the marine atmospheric boundary layer (MABL) to mesoscale sea surface temperature (SST) perturbations is investigated over the Agulhas Return Current during winter from a 1-month, high-resolution, three-dimensional simulation using the Weather Research and Forecasting (WRF) mesoscale model. A steady lower boundary condition for July 2002 is...
Hip torque production is associated with certain knee injuries. The hip
rotators change function depending on hip angle. Objective: To compare hip-rotator
torque production between 3 angles of hip flexion, limbs, and sexes. Design:
Descriptive. Setting: University sports medicine research laboratory. Participants:
15 men and 15 women, 19–39 y. Intervention:...
A solid, crystalline fumigant (dazomet) with and without a supplemental copper compound was evaluated as an internal decay control treatment on Douglas-fir poles in two long-term field tests. Methylisothiocyanate (MITC), the decomposition
product of dazomet, was used as a measure of effectiveness. MITC levels in the wood were above the...
Cumulative loss of habitat and long-term decline in the populations of the Lesser Prairie-Chicken (Tympanuchus pallidicinctus) have led to concerns for the species’ viability throughout its range in the southern Great Plains. For more efficient conservation past and present distributions of genetic variation need to be understood. We examined the...
We tracked three groups of steelhead Oncorhynchus mykiss smolts implanted with acoustic transmitters to determine whether the degree of hatchery domestication or the juvenile rearing environment (hatchery raceway versus natural stream) influenced migration timing and survival in the Alsea River and estuary, Oregon. Two groups consisted of age-1 smolts reared...
We quantified the juvenile rearing and migratory patterns of individuals from a population of fall-spawning Chinook salmon Oncorhynchus tshawytscha in Oregon's Salmon River estuary using otolith microchemistry and microstructure. The study confirmed the daily periodicity of otolith growth increments in a natural fish population under field conditions and validated fundamental...
Small-scale urban natural parks have the potential to contribute to the health and well-being of urban communities. Although recreation researchers have seldom focused on such areas, recreation research theory can be successfully applied to urban natural parks, especially if augmented by the application of social capital and social networks theory....
Seamounts are ubiquitous features of the seafloor that form part of the fabric of oceanic crust. When a seamount enters a subduction zone, it has a major affect on forearc morphology, the uplift history of the island arc, and the structure of the downgoing slab. It is not known, however,...
Collocated Moderate Resolution Imaging Spectroradiometer (MODIS) imagery and
Cloud‐Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) 532 nm
total attenuated backscatter coefficients were used to identify 50 km scale segments
for ocean regions that had only a single layer of marine stratocumulus. On the basis of
whether the underlying ocean...
In this paper the authors investigate the action of ambient turbulence on thermohaline interleaving using both theory and numerical calculations in combination with observations from Meddy Sharon and the Faroe Front. The highly simplified models of ambient turbulence used previously are improved upon by allowing turbulent diffusivities of momentum, heat,...
Internal tides on the continental shelf can be intermittent as a result of changing hydrographic conditions
associated with wind-driven upwelling. In turn, the internal tide can affect transports associated with upwelling.
To study these processes, simulations in an idealized, alongshore uniform setup are performed utilizing
the hydrostatic Regional Ocean Modeling...
Electric and magnetic fields in the (10−4–1.0) Hz band were monitored at two sites
adjacent to the San Andreas Fault near Parkfield and Hollister, California, from 1995 to
2007. A data window (2002–2005), enclosing the 28 September 2004 M6 Parkfield
earthquake, was analyzed to determine if anomalous electric or magnetic...
Double excitonic absorption peaks are observed in textured BaCuSF and BaCuSeF thin films. The excitonic doublet separation increases with increasing fraction of heavy chalcogen in the thin-film solid solutions, in good agreement with the spin-orbit splitting of the valence bands calculated by density-functional theory. In BaCuSF and BaCuSeF, the excitons...
In situ photoemission spectroscopy experiments are used to characterize the interface between ZnTe and the wide band gap p-type semiconductor BaCuSeF. The contact is characterized by a null valence-band offset, a large conduction-band offset, and a chemically graded interface. By applying the transitivity rule for band offset and on the...
Comprehensive observations of velocity, density, and
turbulent dissipation permit quantification of the nonlinear
internal wave (NLIW) contribution to vertical heat flux and
lateral mass transport over New Jersey’s shelf. The effect of
NLIWs on the shelf heat budget was significant. On
average, heat flux in NLIWs was 10 times larger...
A novel swine-origin H1N1 influenza A virus has been identified as the cause of the 2009 influenza pandemic in humans. Since then, infections with the pandemic (H1N1) 2009 influenza virus have been documented in a number of animal species. The first known cases of lethal respiratory disease associated with pandemic...
Sea surface temperature variations along the entire U.S. East Coast from 1875 to 2007 are characterized using a collection of historical observations from lighthouses and lightships combined with recent buoy and shore-based measurements. Long-term coastal temperature trends are warming in the Gulf of Maine [1.0° ± 0.3°C (100 yr)⁻¹] and...
The intraseasonal variability of turbulent surface heat fluxes over the Gulf Stream extension and subtropical mode water regions of the North Atlantic, and long-term trends in these fluxes, are explored using NCEP–NCAR reanalysis. Wintertime sensible and latent heat fluxes from these surface waters are characterized by episodic high flux events...
Borehole temperature profiles provide a record of ground surface temperature (GST)
change at the decadal to centennial time scale. GST histories reconstructed from boreholes
are particularly useful in climate reconstruction if changes in GST and surface air
temperature (SAT) are effectively coupled at decadal and longer time periods and it...
We examine the relation between δ¹⁸O in rainwater collected in southwestern Oregon
and climate variables including temperature, parcel trajectory, precipitation amount, and
specific humidity. Local surface air temperature at the time of sample collection explains a
large proportion of δ¹⁸O variability, suggesting that paleoclimatic archives that are related
to rainfall...
BaCuChF (Ch=S,Se,Te) surfaces and BaCuSeF interfaces with zinc phthalocyanine (ZnPc) were studied by photoelectron spectroscopy. BaCuChF compounds oxidize when exposed to ambient atmosphere. Se capping layers were studied as a means to produce representative surfaces for photoelectron spectroscopic measurements. Decapped BaCuSeF surfaces remain O-free and C-free when the Se layer...
Test taking is a humiliating experience for many students, with no perceived direct educational benefit. That need not be so. When circumstances allow, I use a two-pen method of collaborative testing. Students have told me that they leave the exam having figured out what they didn’t understand, filled in the...
Accurate methods are needed to measure changing soil water content from meter to kilometer scales. Laboratory results demonstrate the feasibility of the heat pulse method implemented with fiber optic temperature sensing to obtain accurate distributed measurements of soil water content. A fiber optic cable with an electrically conductive armoring was...
Through its role in the energy and water balances at the land surface, soil moisture is a key state variable in surface hydrology and land-atmosphere interactions. Point observations of soil moisture are easy to make using established methods such as time domain reflectometry and gravimetric sampling. However, monitoring large-scale variability...
Ocean Wave Energy Converters (OWECs) operating on
the water surface are subject to storms and other extreme
events. In particular, high and steep waves, especially
breaking waves, are likely the most dangerous to OWECs. A
method for quantifying the breaking severity of waves is
presented and applied to wave data...
The tidally varying circulation, stratification, and salt flux mechanisms are
investigated in a shallow salt wedge estuary where fluvial and tidal velocities are large and
the steady baroclinic circulation is comparatively weak. The study integrates field
observations and numerical simulations of the Merrimack River estuary. At moderate to
high discharge...
Uptake ofHNO₃ onto cirrus ice may play an important role in tropospheric NOx cycling. Discrepancies between modeled and in situ measurements of gas‐phase HNO₃ in the troposphere suggest that redistribution and removal mechanisms by cirrus ice have been poorly constrained. Limited in situ measurements have provided somewhat differing results and...
We used reverse time capture-mark-recapture models to describe associations between rate of population change (λ) and climate for northern spotted owls (Strix occidentalis caurina) at six long-term study areas in Washington and Oregon, USA. Populations in three of six areas showed strong evidence of declining populations, while populations in two...
Knowledge of cloud and precipitation formation processes remains
incomplete, yet global precipitation is predominantly produced by
clouds containing the ice phase. Ice first forms in clouds warmer
than −36 °C on particles termed ice nuclei. We combine observations
from field studies over a 14-year period, from a variety of
locations...
This report is intended for citizen advocates. The goal is to provide a concise summary of current issues and problems for native salmonids in the Upper Deschutes and describe the actions needed to resolve those problems. It is based on information from all federal and Oregon agencies involved in the...
High‐resolution surveys of oceanographic and atmospheric conditions made during the
winter over the inner shelf off northwest Australia are used to examine the coastal ocean
response to large outgoing heat and freshwater fluxes. Relatively cool, low‐humidity air
blows off the Australian continent out over the tropical continental shelf, resulting in...
It is well known that numerical simulations of freshwater discharges produce plumes that spread in the
direction opposite to that of the propagation of coastally trapped waves (the upstream direction). The lack of
a theory explaining these motions in unforced environments deemed the numerical results suspect. Thus, it
became a...
Six different SST analyses are compared with each other and with buoy data for the period 2007–08. All analyses used different combinations of satellite data [for example, infrared Advanced Very High Resolution Radiometer (AVHRR) and microwave Advanced Microwave Scanning Radiometer (AMSR) instruments] with different algorithms, spatial resolution, etc. The analyses...
This note considers the decay of a bottom-trapped freshwater plume after the causative freshwater inflow
has ceased. It is shown that shortly after the low-density inflow stops, the barotropic pressure field that it
created radiates away and the ocean circulation becomes controlled by baroclinic pressure gradients generated
by the remnants...
Humans, in conjunction with natural top-down processes and through a sequence of cascading trophic interactions, may have contributed
to the Pleistocene megafaunal extinctions. The arrival of the first humans, as hunters and scavengers, through top-down forcing, could have
triggered a population collapse of large herbivores and their predators. We present...
The Oregon Spatial Data Library (http://spatialdata.oregonexplorer.info/) provides easy and convenient ways to find, access, and share geospatial data. Developed in partnership with the Oregon Department of Administrative Services (DAS), the Oregon Spatial Data Library provides access to spatial data including "framework" data for the State of Oregon. Framework datasets serve...
Heat and salt balances over the New England shelf are examined using 10 month time
series of currents, temperature, and salinity from a four element moored array and surface
heat and freshwater fluxes from a meteorological buoy. A principal result is closure of
the heat budget to 10 W m−2....
During the Ice in Clouds Experiment–Layer Clouds (ICE-L), aged biomass-burning particles were identified within two orographic wave cloud regions over Wyoming using single-particle mass spectrometry and electron microscopy. Using a suite of instrumentation, particle chemistry was characterized in tandem with cloud microphysics. The aged biomass-burning particles comprised ~30%–40% by number...
The initiation of ice in an isolated orographic wave cloud was compared with expectations based on ice nucleating aerosol concentrations and with predictions from new ice nucleation parameterizations applied in a cloud parcel model. Measurements of ice crystal number concentrations were found to be in good agreement both with measured...
During the Ice in Clouds Experiment‐Layer Clouds (ICE‐L), dry lakebed, or playa,
salts from the Great Basin region of the United States were observed as cloud nuclei in
orographic wave clouds over Wyoming. Using a counterflow virtual impactor in series with
a single‐particle mass spectrometer, sodium‐potassium‐magnesium‐calcium‐chloride
salts were identified as...
These first measurements of specific surface area (SSA)
of bulk samples of subsurface marine basalts were undertaken
to determine the potential area available for microbial
colonization. SSA ranged from 0.3 to 52 m2/g of basalt
with the lowest value coming from pillow basalt and the
highest value from breccia. The...
Changing environmental conditions in the North Pacific are altering the lipid/fatty acid (FA) composition of zooplankton assemblages, but the consequences to resident fish larvae are unknown. In the laboratory, we reared Pacific cod Gadus macrocephalus larvae over 4 wk on prey enriched with varying levels of 2 essential FAs (docosahexaenoic...
Three‐dimensional circulation in the coastal transition zone (CTZ) off Oregon is
studied using a 3 km resolution model based on the Regional Ocean Modeling System.
The study period is spring and summer 2002, when extensive observations were available
from the northeastern Pacific component of the Global Ocean Ecosystems Dynamics
project....
We develop the theory of degenerate and nonlinear evolution systems in mixed formulation.
It will be shown that many of the well-known results for the stationary problem extend to
the nonlinear case and that the dynamics of a degenerate Cauchy problem is governed by a nonlinear
semigroup. The results are...
Kalapuya is described as a new, monotypic truffle genus in the Morchellaceae known only from the Pacific northwestern United States. Its relationship to other hypogeous genera within Morchellaceae is explored by phylogenetic analysis of the ribosomal LSU and EF1α protein coding region. The type species, K. brunnea, occurs in Douglas-fir...
An idealized, linear model of the coastal ocean is used to assess the domain of influence of surface type data, in particular how much information such data contain about the ocean state at depth and how such information may be retrieved. The ultimate objective is to assess the feasibility of...
Restriction of long-distance movement of several potyviruses in Arabidopsis (Arabidopsis thaliana) is controlled by at least three
dominant restricted TEV movement (RTM) genes, named RTM1, RTM2, and RTM3. RTM1 encodes a protein belonging to the
jacalin family, and RTM2 encodes a protein that has similarities to small heat shock proteins....