Objective: Best practices such as the FAIR Principles (Findability, Accessibility, Interoperability, Reusability) were developed to ensure that published datasets are reusable. While we employ best practices in the curation of datasets, we want to learn how domain experts view the reusability of datasets in our institutional repository, ScholarsArchive@OSU. Curation workflows...
Raspberries are an important commodity worldwide, with the United States (U.S.) leading fourth in global production in 2017. An important factor when shipping propagated Rubus across the globe is the security of clean plant material verified through pathogen detection methods which is vital in preventing disease spread. A raspberry virus...
The archaeological record of the First Americans is known almost exclusively from interior sites located away from coastal margins. While archaeologists hypothesize that early peoples initially migrated into the Americas along the Pacific coast, environmental changes associated with postglacial sea level rise may have destroyed or obscured such early sites....
The safety of coastal infrastructure has been a concern after the Indian Ocean Tsunami in 2004 and the Great East Japan Tsunami in 2011. The western coast of the United States is also exposed to tsunami hazards due to the Cascadia subduction zone. Therefore, it is critical to design coastal...
Many libraries offer workshops on research topics such as data management and information organization for graduate students and faculty. We recommend that library workshops focus on teaching skills rather than principles or theories, especially if the goal is to improve data management practices. At Oregon State University Libraries, we have...
In this dissertation, we explored multiple coding techniques to reduce energy consumption, improve performance, and secure wireless sensor networks specifically and ad-hoc networks in general. With the introduction of Internet of Things (IoT) and 5G technologies, wireless sensor networks are quickly emerging as an important and key technology in the...
The Inmaculada Mine is located in the Miocene belt of epithermal deposits that extends from southern Peru to northern Chile and Bolivia. This belt is known for its silver-rich epithermal veins that have been worked since colonial times. The Inmaculada Mine belongs to a mining district that includes, from north...
Implementing multicomponent diffusion in numerical combustion studies is computationally expensive due to the challenges involved in computing diffusion coefficients. As a result, mixture-averaged diffusion treatments or simpler methods are used to avoid these costs. However, the accuracy and appropriateness of the mixture-averaged diffusion model has not been verified for three-dimensional...
The ubiquity of high quality video and proliferation of mobile devices has contributed to an unprecedented rise in video consumption. HTTP, in conjunction with adaptive streaming, has become the de facto mechanism for delivering the vast majority of video as it readily caters to heterogeneous networks and devices. This dissertation...
The number of deaths by suicide each year in the United States is rising. Men, women, and people of all ages die by suicide at high rates. Someone diagnosed with anorexia or bulimia is at significantly greater risk of completing or attempting suicide, making clear the importance of understanding how...
The 1989 Exxon Valdez oil spill (EVOS) in Prince William Sound, Alaska provided impetus for a great deal of research into the ecosystems of the Northern Gulf of Alaska. Buried within the multitude of resulting impacts, which included hundreds of thousands of oiled seabirds and dramatic ecosystem shifts in the...
Newcomers’ seamless onboarding is important for open collaboration communi- ties, particularly those that leverage outsiders’ contributions to remain sustainable. Nevertheless, previous work shows that OSS newcomers often face several barriers to contribute, which lead them to lose motivation and even give up on contributing. A well-known way to help newcomers...
At its inception in 1946, the United States’ National School Lunch Program (NSLP) was promoted as a success story; a boon for families navigating poverty, a means of buoying food prices by absorbing farm surplus, and a treatment for hunger in some of our country’s most vulnerable populations. Government subsidies...
The United States (U.S.) has seen dramatic growth in installed wind energy generation capacity in recent years, and that growth is expected to remain strong in the near term. The siting of wind energy facilities poses unique challenges that may be exacerbated by increased buildout. As the number of wind...
Wave energy is a potentially important renewable clean source of energy that can help solve the energy demand throughout the world. A great deal of research has been conducted in the last few decades and it is now reaching the point of full implementation. In order to compete with other...
The lagoons spanning Alaska’s Beaufort Sea coast provide a unique habitat for arctic wildlife. These lagoons and the food webs they support face extreme seasonality with nine months of ice cover followed by a spring thaw that pulses a large amount of freshwater and nutrients into the lagoons. Bacteria link...
Racehorses are elite athletes that undergo repetitive stresses from jogging, cantering, and galloping exercises, and there is significant evidence that the majority of racehorse musculoskeletal injuries are due to repetitive stress or overuse. Musculoskeletal injuries have negative consequences on the racing industry through the loss of use or death of...
Pseudomonas is a diverse, ubiquitous, and widely studied genus of bacteria. As Pseudomonas species occupy a wide range of niches in the ecosystem, they have made remarkable biological impacts. Better understanding of Pseudomonas biology, genetic diversity, and functional interactions with other organisms and the environment will provide valuable insights into...
Sphaerulina musiva is a fungal pathogen that causes Septoria leaf spot and stem canker on susceptible Populus species and hybrids. In this thesis, host and pathogen contributions to Septoria stem canker disease were explored through: 1) a greenhouse study associating Septoria stem canker phenotypes with molecular markers from a genetic...
Human alteration of natural landscapes leads to biodiversity loss, often from a combination of area effects and fragmentation effects. Smaller habitat patches support fewer species than large ones and incur additional consequences from isolation. Efforts to preempt biodiversity loss from insular habitat fragments are complicated by individualistic species responses and...
International donors play a significant role in the mitigation and prevention of transboundary water disputes and the promotion of cooperation. In doing so, donors can exercise water diplomacy through a wide range of instruments from facilitating or mediating the negotiations to financing capacity building and specific activities in official and...
The bioavailability of chemical compounds in the marine environment fundamentally influences the growth and physiology of microorganisms. Organic and inorganic chemicals that are produced by some marine plankton can be consumed by other plankton for energy production, growth, or to initiate essential physiological processes. Cultures of the diatom Thalassiosira pseudonana,...
Cross-laminated timber (CLT) is an attractive building material because it is renewable, promotes fast installation, and possesses a high strength-to-weight ratio. The use of CLT in seismic applications has become increasingly common with the development of post-tensioned CLT rocking wall lateral force resisting systems (LFRS). The CLT pier-and-spandrel system designed,...
Many database users are not familiar with formal query languages, the concept of schema, or the exact content of their database. Thus, it is challenging for these users to formulate their information needs over semi-structured and structured databases. To address this problem, researchers have proposed usable query interfaces over which...
Our goal is to build a system to model the RNA sequences that reveals their structural information by using efficient dynamic programming algorithms and deep learning approaches. We aim to 1) achieve linear-time for RNA secondary structure prediction based on existing minimum free energy models; 2) utilize deep neural networks...
As a general solution to the problem of managing structural and content variability in relational databases, in previous work we have introduced the Variational Database Management System (VDBMS). VDBMS consists of a representation of a variational database (VDB) and a corresponding typed query language (v-query). However, since this is a...
Heat flux measurements of radiation emissions from turbulent premixed flames diluted with N 2 and CO 2 were taken to identify sensitivities of radiation heat loss to diluent fraction and species. This work is motivated by the desire to better characterise radiant heat transfer in the presence of combustion products,...
Atmospheric fine particulate matter (PM2.5) has been linked to the death of 7 million people per year around the planet. The organic portion of PM2.5 is responsible for increases in oxidative stress, inflammation, mutation and carcinogenesis. Anthropogenic activity releases more organic material into the atmosphere, and has increased the amount...
International development programs are often implemented with the goal of building community resilience, but without a clear articulation of how this goal will be met, or any consideration of if or why the effort was successful after it has concluded. This thesis considers three different activities implemented by the U....
Daily social stressors are important everyday experiences that influence an individual’s daily health and well-being across the lifespan. One pathway through which daily social stressors influence health and well-being is through changes in positive and negative affect. The vast majority of previous research has focused on individual difference characteristics to...
The following dissertation consists of six sections: a general introduction, three manuscripts, a general conclusion, and an overall bibliography. The three manuscripts report on: (1) identifying genetic interactions in diverse germplasm developed during introgression of a major gene conferring resistance to stem rust (Puccinia graminis f. sp. tritici), (2) mapping...
This dissertation focuses on the application of diatom frustules, the biosilica shell of an algae possessing physical and photonic properties capable of enhancing optical signals, for the enhancement of optical sensing. In this work, we incorporate diatom frustules into biosensors for signal enhancement and improved target molecule detection. The potential...
Disentangling sediment source from sediment transport is a fundamental marine geologic challenge critical to the interpretation of any sedimentary record. The Eirik Ridge, a sediment drift south of Greenland, receives terrigenous sediment primarily from subglacial erosion of south Greenland’s Precambrian bedrock and Paleogene volcanics that outcrop in east Greenland and...
Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
Solar energy systems purchased in the United States have increased tenfold since 2010. As solar photovoltaics (PV) markets expand, solar energy becomes more affordable. In the last five years, the price of solar has decreased by 40 percent. Despite solar PV becoming more affordable and rising consumer demand, between 50...
Skin condition assessment of wildlife can provide insight into individual and population health. Yet, logistics can limit skin condition assessment of large whales. We developed a standardized, quantitative protocol using photographs to assess skin condition of blue whales in New Zealand, and demonstrate the value gained by testing hypotheses, documenting...
More and more people have incorporated GIF in their messaging these days and often send gif as a reply. GIF is Graphics Interchange Format and is a short-animated picture without a sound. Searching a trivial gif with a regular emotion is easy to find but if some iconic expression is...
Metal-oxo clusters can be described as soluble pieces of metal-oxide frameworks. Currently, metal-oxo clusters are being considered as solution-based precursors for extreme ultraviolet (EUV, 13.5 nm) photoresist materials, which are a crucial component in the fabrication of microelectronic devices. Two different photoresist precursor systems have been investigated – alkyltin clusters...
Accurately describing drag and virtual mass forces in two-phase flows is crucial for high fidelity modeling of nuclear thermal hydraulic safety systems. This study compares existing drag coefficient correlations commonly used in computational fluid dynamics (CFD) applications for air bubbles to experimental data collected for ellipsoidal air bubbles of varying...
This dataset is based on quantitative PCR (qPCR) output. Output from all qPCR was compiled in this dataset and kept as the original. Information about sampling time, id, concentration, sites and a conversion of the quantity in femtograms were added as complement to the qPCR output to facilitate data analysis
Chiropractic treatment is used to reduce stiffness and pain. While more thoroughly studied in humans, it has been shown to be effective in horses, but relatively little evidence exists to quantify the benefits. To address this shortcoming, four methods were used to assess the effects of chiropractic treatment in horses...
Engineering capstone projects are intended as a bridge from school to professional practice in which students work in teams to use learned knowledge and skills to complete real-world engineering projects. However, while the majority of time in many undergraduate programs is devoted to development of technical knowledge and skills, there...
Proper steep slopes management in urban settings are important to protect human life and property and only becoming more necessary as density of urban populations increases. A low-tech solution to manage slopes is bioengineering, which consists of using plant materials, rock, and soil in various configurations to stabilize slopes. This...
Western juniper (Juniperus occidentalis) encroachment has been associated with negative ecological and hydrological consequences including reductions in herbaceous production and diversity, deterioration for wildlife habitat, and higher erosion and runoff potentials. As a result, western juniper removal is a common and accepted rangeland management practice. Although studies evaluating the ecological...
Successive-approximation-register (SAR) analog-to-digital converters are popular for medium accuracy, medium speed and low power applications, such as in biomedical applications. They have low latency and simple architecture compared with ΔΣ ADCs. This is because of SAR ADCs’ binary searching scheme. Furthermore, SAR ADCs can apply oversampling and noise shaping schemes...
This dissertation presents two qualitative studies investigating expert trauma counselors’ experiences of clinical decision-making and countertransference. Chapter 2, Acutely Alert: A Grounded Theory of Clinical Decision-Making Processes of Expert Trauma Counselors addresses the research question, what are the clinical decision-making experiences and processes of expert trauma counselors? Chapter 3, Exploring...
During the peripartum period (3 weeks before through 3 weeks after calving, a.k.a. “transition”), high producing dairy cows experience, among others, , oxidative stress and immune suppression that compromise performance and increased incidence of diseases.Among trace minerals, supplementation of Selenium (Se) can help to improve the transition by enhancing glutathione...
Dual Language Learners (DLLs) represent a substantial subpopulation in United States preschool programs (Aikens, Kinas, Malone, Tarullo, & Harding, 2017). DLLs often come from low socio-economic backgrounds and encounter barriers to academic success (National Academies of Science, 2017; Thomas & Collier, 2002). One consistent predictor of academic success is executive...
The act of accessing food is embedded within various systems of power. This dissertation problematizes our understanding of food access for vulnerable populations by making explicit ways that social constructions, including power, affect food access for vulnerable populations. This is accomplished across three manuscripts. The first manuscript presents textual analysis...
Since its inception in 1985, the Tri‐State variety development program has primarily focused on the development of processing and dual‐purpose (process and fresh) russets. Recent breeding efforts have focused more on improving genetic resistance to various pests and diseases as a means of lowering production costs. During the past decade,...