One assisted reproductive tool used to propagate highly desirable genetics from elite sire and dam matings is embryo transfer. Superovulation is the first part of the overall protocol and it is a required yet costly and biologically stressful procedure in cattle embryo transfer. The process of superovulation results in high...
OmniGen-AF® (OG; Prince Agri Products, Inc., Quincy, IL) is a feed additive containing brewers dehydrated yeast and B-vitamins that supports immune function in ruminant livestock. Targeted profiling of immune-associated genes in whole blood is an effective platform for identification of a) novel molecular pathways and b) immune response markers to...
The International Commission on Radiological Protection (ICRP) has modeled twelve reference animal and plant (RAP) species using simple geometric shapes in Monte–Carlo (MCNP) based simulations. The focus has now shifted to creating voxel phantoms of each RAP to advance the understanding of radiation interactions in nonhuman biota. The work contained...
The International Commission on Radiological Protection (ICRP) has modeled twelve reference animals and plants (RAPs) with simple geometric shapes to be used when estimating radiation dose to non-human biota (NHB). In recent years, there has been interest in creating more realistic models in order to better understand the radiation interactions...
To evaluate the immunologic and metabolic effects of OmniGen-AF® (Phibro Animal Health corporation, Quincy, IL; OG) supplementation in growing beef cattle, we designed three studies using replacement beef heifers (8.5 and 10.5 months of age) and steers supplemented across backgrounding, transition, and finishing periods. In Study 1, the effect of...
Mouthfeel is one of the most important quality parameters of Chardonnay wines. Malolactic fermentation (MLF) is an important process in wine production, and influential to wine mouthfeel, with the reduction in acidity being particularly important for cool climate wines that generally have higher acidity such as Chardonnay. MLF is typically...
Around 74 ka, a supervolcano, Toba Caldera in Sumatra, Indonesia erupted, producing the Youngest Toba Tuff and its associated caldera. After this catastrophic eruption, a lake filled the caldera, sedimentation within the lake occurred, and the process known as resurgence began. Today, the resurgent dome, Samosir Island, is uplifted 700...
Newcomers’ seamless onboarding is important for open collaboration communi- ties, particularly those that leverage outsiders’ contributions to remain sustainable. Nevertheless, previous work shows that OSS newcomers often face several barriers to contribute, which lead them to lose motivation and even give up on contributing. A well-known way to help newcomers...
A system for radiological dosimetry for nonhuman biota developed by International Commission on Radiological Protection (ICRP) relies on calculations that utilize the Monte Carlo simulations of simple, ellipsoidal geometries with internal radioactivity distributed homogeneously throughout. In this manner it is quick and easy to estimate whole-body dose rates to biota....
This thesis presents the results from Monte Carlo calculations on classical vector spins in
face-centered-cubic (FCC) lattices. The goal of the study was to understand the effect of
interlayer coupling, dilution of magnetic atoms in the lattice, and symmetry-changing
strain.
Experimental work by T. M. Giebultowicz et al. and J....
We use a sample of diphoton + dijet events to measure the effective cross section of double parton interactions, which characterizes the area containing the interacting partons in proton-antiproton collisions, and find it to be σeff = 19.3 ± 1.4(stat) ± 7.8 (syst) mb. The sample was collected by the...
In this research, the comparative performance of permutation and non-permutation schedules is investigated in an assembly flow shop (AFS) with shift production, where a limited buffer storage is available between two machines. Most of the traditional scheduling problems consider continuous production, i.e., production occurs for 24 hours (3 * 8-hour...
Burial Lake sediments from the Noatak Basin in the northwest Brooks Range of Arctic Alaska (68.43°N, 159.17°W, 21.5 m water depth) provide the oldest continuous lacustrine record of paleo-environmental change and paleomagnetic secular variation (PSV) in eastern Beringia. A precise radiocarbon chronology, determined through accelerator mass spectrometry (AMS) allows us...
We report evidence for the simultaneous production of J/ψ and Υ mesons in 8.1 fb⁻¹ of data collected at s√=1.96 TeV by the D0 experiment at the Fermilab pp¯ Tevatron Collider. Events with these characteristics are expected to be produced predominantly by gluon-gluon interactions. In this analysis, we extract the effective cross...
Three experiments evaluated the effects of different management strategies on immune function and performance of feeder cattle. The objective of experiment 1 was to compare the effects of anticipating, delaying, or vaccinating against Bovine Respiratory Disease (BRD) at the time of weaning and feedlot entry on growth, DMI, and plasma...
The growth of Brettanomyces bruxellensis is a major cause of wine spoilage due tothe production of the volatile phenols 4-ethylphenol (4-EP) and 4-ethylguaiacol (4-EG), derivatives of p-coumaric acid and ferulic acid. During the winemaking process,some microorganisms can impact the concentration of the 4-EP precursors pcoumaricand coutaric acid (tartaric acid-esterified p-coumaric...
Hatcheries are often perceived as a source of pathogen amplification, potentially increasing disease risk to free-ranging populations; at the same time, free-ranging fishes may introduce pathogens into hatcheries through untreated water sources. Many pathogens exist naturally within the environment (with the exception of introduced pathogens) and the presence of a...
Recreational fishing has a long history in the USA, developing from the subsistence fisheries of Native Americans together with a partial subsistence fishery of later immigrants. Marine, diadromous, and aquatic taxa are targeted, including both vertebrates and macroinvertebrates. This paper defines recreational fishing, describes the main fishing techniques, identifies target...
Histology is often underutilized in aquatic animal disease screening and diagnostics. The agreement between histological classifications of infection and results using diagnostic testing from the American Fisheries Society's Blue Book was conducted with 4 common salmon pathogens: Aeromonas salmonicida, Renibacterium salmoninarum, Ceratomyxa shasta, and Nanophyetus salmincola. Adult Chinook salmon (Oncorhynchus...
This dataset was created for the purpose of collecting and cataloguing sources that mentioned aspects of cultural diversity or workforce diversity within natural resource professions. The exploratory questions that prompted the collection of sources in this dataset were:
- Is diversity discussed in scholarly sources within natural resources?
- If...
Many factors should be considered before selecting a graduate program to attend. Graduate education can be expensive, so financial and health care benefits offered by a department or college should be considered when selecting a graduate program. A majority of fisheries graduate students recently surveyed believed that financial aspects should...
The fisheries resource is almost and/ or had have been over-exploited in Java Island. Cilacap lies in the southern part of Java has a reasonable stock at this moment but adversed by the climate change. Many parties have not prepared to react for the adaptation with such uncertain situation. The...
Juvenile Chinook Salmon (Oncorhynchus tshawytscha) have a finite amount of energy that they can use to move from their riverine habitat to their oceanic habitat. Fish in the Willamette River Basin are prevented from moving to the ocean easily by dams which create reservoirs, where they reside for up to...
Ceratomyxa shasta infects salmonids in the Pacific Northwest (PNW) of North America, occasionally causing losses in wild and captive populations. Host-specific parasite genotypes (O, I, II, III) were previously characterized molecularly using markers in the ribosomal DNA and phenotypically by type host in the Klamath River, CA/OR. This thesis sough...
Fisheries nationwide are facing major challenges that require collection of real time (RT) and near real time (NRT) information. High-resolution RT and NRT data are critical for addressing a variety of fishery needs including quota accounting, observer coverage, bycatch management, electronic logbook and fish ticket requirements, research and monitoring, spatial...
The freshwater trematode Nanophyetus salmincola has been demonstrated to impair salmonid immune function and resistance to the marine pathogen Vibrio anguillarum, potentially resulting in ocean mortality. We examined whether infection by the parasite N. salmincola similarly increases mortality of juvenile Chinook Salmon Oncorhynchus tshawytscha when they are exposed to the...
Honeybees and honey combs are good indicators of environmental contamination and can be important for dose calculations. In the event of reactor accidents and nuclear weapon testing, the released radioactive materials are likely to be transported through various environmental pathways as well as by humans and animals, including bees. Due...
The waterborne, myxozoan parasite Ceratonova shasta is endemic to the Pacific Northwest and can be lethal to its secondary salmonid host, including the culturally, economically, and recreationally important spring Chinook salmon (Oncorhynchus tshawytscha) of the Deschutes River, OR. Previously described genotypes of C. shasta exhibit specificity with their salmonid hosts....
A limited scope Probabilistic Risk Assessment (PRA) of a vented nuclear fuel system for a Generation IV Gas-Cooled Fast Reactor Plant was performed. The goal of the study was to better understand the safety and licensing implications of vented fuel technology. A Level 1 PRA was performed to determine the...
Sedecula is a monotypic genus of hypogeous fungi that is rare and endemic to dry conifer forests of the western United States. The only known species, Sedecula pulvinata, was described in 1941 and its taxonomic placement and trophic status have remained uncertain ever since. Here we employ isotopic and molecular...
Parasites and pathogens influence the size and stability of wildlife populations, yet many population models ignore
the population-level effects of pathogens. Standard survival analysis methods (e.g., accelerated failure time models)
are used to assess how survival rates are influenced by disease. However, they assume that each individual is equally
susceptible...
We are conducting studies on the impacts of parasites on Oregon coastal coho salmon (Oncorhynchus kistuch). An essential first step is documenting the geographic distribution of infections, which may be accomplished by using different methods for parasite detection. Thus, the objectives of the current study were to (1) identify parasite...
Pb(Zr,Ti)O₃ (PZT) is a very attractive material for use in piezoelectric-based microelectromechanical systems (MEMS) due to its high piezoelectric coefficients and ability for large displacements with relatively low applied fields (as compared to electrostatic-based MEMS). The piezoelectric effect is strongly anisotropic, thus it is very desirable to control the crystallographic...
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Figure 4.6: Final LNO process implemented in PZT on LNO system. ........................62
Ectomycorrhizal fungi (EmF) form symbioses with trees. These symbioses profoundly influence forest ecology. Certain EmF form specialized profusions of hyphae, known as ectomycorrhizal fungal mats (mats) which are visible to the naked eye, alter forest soil biogeochemistry, substantially contribute to soil microbial biomass/respiration and support unique microbial communities. Piloderma and...
Rockfishes (Sebastes) are important species for commercial and recreational fishing, as well as evolutionary and ecological research. It can be impractical to identify the sex of rockfishes using visual identification or lethal dissection, and the sex-determination systems of these species have not been studied extensively. The aim of this research...
This testing supplement supersedes FAA-CT-8080-2F, Airman Knowledge Testing Supplement for Sport Pilot, Recreational Pilot, and Private Pilot, dated 2013.
This Airman Knowledge Testing Supplement is designed by the Federal Aviation Administration (FAA) Flight Standards Service.
Ceratomyxa shasta is a myxozoan parasite that infects salmonid fishes causing the disease ceratomyxosis that is characterized by severe hemorrhage and necrosis of the intestine and death of the fish host. Ceratomyxa shasta is endemic to the Pacific Northwestern United States and Canada, where epizootics are reported for both wild...
Using spatial autocorrelation analysis, we
examined the within-population genetic structure of
Rhizopogon vinicolor and R. vesiculosus, two hypogeous
ectomycorrhizal (EM) species that are sympatric
sister taxa known to differ in their clonal structure.
We collected 121 sporocarps and 482 tuberculate EM
of both species from a 20 ha forest stand...
Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa across broad spatial and temporal scales is necessary to ensure forest management and forest manufacturing activities meet their environmental goals of maintaining biodiversity. Our...
Wild fish populations are typically infected with a variety of micro- and macroparasites that may affect fitness and survival, however, there is little published information on parasite distribution in wild juvenile salmonids in three upper tributaries of the Willamette River, OR. The objectives of this survey were to document (1)...
Over the past decade the International Commission on Radiological Protection has developed a comprehensive approach to environmental protection that includes the use of Reference Animals and Plants (RAPs) to assess radiological impacts on the environment. For the purposes of calculating radiation dose, the RAPs are approximated as simple shapes that...
We sought to characterize the distribution of juvenile walleye pollock Theragra chalcogramma in an area of intense predator-prey interactions and to describe habitat features that lead to their observed distributions. The distribution of juvenile walleye pollock around the Pribilof Islands in the southeastern Bering Sea in 2008 and 2009 was...
Diseases caused by parasites are recognized as significant sources of mortality in wild fish populations. I assessed the impacts of multispecies parasitism on a threatened stock of juvenile coho salmon (Oncorhynchus kisutch). A crucial prerequisite to this research was proper identification of parasites, which can be difficult for species lacking...
During the Ice in Clouds Experiment‐Layer Clouds (ICE‐L), dry lakebed, or playa,
salts from the Great Basin region of the United States were observed as cloud nuclei in
orographic wave clouds over Wyoming. Using a counterflow virtual impactor in series with
a single‐particle mass spectrometer, sodium‐potassium‐magnesium‐calcium‐chloride
salts were identified as...
Fungi are the primary biological agents of wood deterioration and cause major economic losses of wood products globally. Wood in outdoor applications tends to remain wet for extended time periods, making it susceptible to fungal attack. Understanding the factors involved in fungal colonization of wood is important for developing improved...
Pacific lamprey, Entosphenus tridentatus, have shown recent and rapid declines in abundance. These anadromous fish return to streams where they mature, spawn and die. It has been inferred that Pacific lamprey enter freshwater and reside for ~ 1 year before spawning. This long exposure to the freshwater environment may affect...
Tracking vibrational motions during a photochemical or photophysical process has gained momentum, due to its sensitivity to the progression of reaction and change of environment. In this work, we implemented an advanced ultrafast vibrational technique, femtosecond-stimulated Raman spectroscopy (FSRS), to monitor the excited state structural evolution of an engineered green...
Mycobacteriosis is a common disease of laboratory zebrafish (Danio rerio). Different infection patterns occur in zebrafish depending on mycobacterial species. Mycobacterium marinum and M. haemophilum produce virulent infections associated with high mortality, whereas M. chelonae is more wide spread and not associated with high mortality. Identification of mycobacterial infections to...
Aquatic ecosystems continue to be increasingly affected by climate warming. For salmonids in the Pacific Northwest of North America, increasing temperatures pose tighter thermal constraints on their habitat use as well as aspects of their individual performance, such as disease resistance. This thesis examines the effect of temperature on the...
This dissertation focuses on extending the application scope of surface enhanced infrared absorption spectroscopy to gas sensing. The method we propose is incorporating plasmonic nanostructures with nano-composite material, metalorganic framework, which can selectively preconcentrate certain gas molecules into the nanopores. The preconcentrating property is first demonstrated by applying metal-organic framework...
Effective and sustainable fisheries management not only depends on identifying and defining stocks (fundamental unit of management), but also on having knowledge of factors influencing the abundance, distribution and connectivity of stocks. Population structure of Pacific cod (Gadus macrocephalus) in the southeastern Bering Sea (EBS) remains unresolved although genetic data...
In 2008, the US Department of Energy’s (DOE) Wind and Water Power Program issued a funding opportunity announcement to establish university-‐led National Marine Renewable Energy Centers. Oregon State University and the University of Washington combined their capabilities in wave and tidal energy to establish the Northwest National Marine Renewable Energy...
Nearly 3000 juvenile Chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon captured in nearshore waters off the coasts of Washington and Oregon from 1999-2004 were tested for infection by Renibacterium salmoninarum, Nanophyetus salmincola, and skin metacercariae. First, three quantitative PCR primer/probe sets were compared for detection of R. salmoninarum; amplification...
The purpose of this review is to stimulate new ideas regarding low-dose environmental mixtures and carcinogens and their potential to promote invasion and metastasis. Whereas a number of chapters in this review are devoted to the role of lowdose environmental mixtures and carcinogens in the promotion of invasion and metastasis...
This thesis consists of two major components. The first part is concerned with video object instance segmentation (VOS), which is the task of assigning per-pixel labels perframe of a video sequence to indicate foreground object instance membership, given the first frame ground truth mask. VOS has myriad applications, from video...
In the last decade regulatory bodies have begun to implement standards to protect populations of non-human biota (NHB) from the consequences of radiation exposure. This is a departure from previous regulatory frameworks which were concerned only with protecting man. The implementation of these new standards has started an ongoing discussion...
The purpose of this study is to critically explore low-income women's experience as they negotiate post secondary education in community colleges. Three research questions explore the context through which low-income women have entered the college experience, what that experience is like for them, and how the community college experience has...
The complexity of designing and testing today's system on chip (SOC) is increasing due to greater integrated circuit (IC) density and higher IO and memory frequencies. SOCs for the mobile phone and tablet market have the unique challenge of short product development windows, at times less than six months, and...
One of the biggest hurdles for a juvenile salmonid (Oncorhynchus mykiss) is migrating downstream from freshwater spawning grounds to the ocean. Juveniles from wild broodstock were reared from the South Santiam River for more than 1 year at the Oregon Hatchery Research Center (OHRC) in Alsea, OR. The fish were...
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Chapter 4- The effect of Complex Structure on the
The goal of my dissertation was to explore how scale influences stream restoration prioritization strategies for an anadromous species and identify influential uncertainties that exist at different scales. My objectives were to (1) produce a comprehensive review of the Chinook salmon management challenges in California’s Central Valley and identify the...
Sedimentary records from the North Atlantic, instrumental in the development of modern paleo-geomagnetic concepts, show a highly variable field even during times of constant polarity. Yet, our understanding of how the magnetization is acquired in the sediments is poorly understood. Primary magnetizations preserved in deep-sea sediments are known to be...
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Figure 4.1. Bathymetric map of the Northern North Atlantic and study sites .............75
Open Source Software (OSS) communities are homogenous and their lack of diversity is of concern to many within this field. This problem is becoming more pronounced as it is the practice of many technology companies to use OSS participation as a factor in the hiring process, disadvantaging those who are...