RNA interference pathways can involve amplification of secondary siRNAs by RNA-dependent RNA polymerases. In plants, RDR6-dependent secondary siRNAs, including transacting siRNAs (tasiRNAs), arise from transcripts targeted by some microRNAs (miRNAs). In the case of TAS3 tasiRNA formation, ARGONAUTE7 (AGO7)-miR390 complexes interact with primary transcripts at two sites, resulting in recruitment...
Environmental history recorded in estuarine sediment describes water quality regimes through the use of geochemical and biological proxies. We collected sediment cores from two locations in the Coos Estuary, Oregon, at South Slough and Haynes Inlet, spanning from ~ 1680 AD to the present. To reconstruct the historical water column oxygen...
As more people become interested in rock climbing, the need to understand climbers and their preferences and how their activities impact the resource are more vital than ever. With increased use, and with little empirical data about the Yosemite climbing community, park managers cannot adequately develop a comprehensive climbing management...
The agricultural industry across the United States is experiencing a shortage of qualified and interested young professionals who aspire to enter the agricultural sector. Internships have largely been used as an effective hands-on learning tool, exposing college students to an array of occupational skills and expectations in hopes of creating...
The purpose of this study was to explore the lived experiences of secondary agriculture teachers as they reconcile the competing demands of the profession in the social landscape of School-Based Agricultural Education. Previous literature about the agriculture teacher shortage problem revealed opportunities for research to utilize qualitative approaches and alternative...
Correction
23 Dec 2015: The PLOS ONE Staff (2015) Correction: Evaluating Multi-Level Models to Test Occupancy State Responses of Plethodontid Salamanders. PLOS ONE 10(12): e0145899. https://doi.org/10.1371/journal.pone.0145899
The growth of Brettanomyces bruxellensis is a major cause of wine spoilage due tothe production of the volatile phenols 4-ethylphenol (4-EP) and 4-ethylguaiacol (4-EG), derivatives of p-coumaric acid and ferulic acid. During the winemaking process,some microorganisms can impact the concentration of the 4-EP precursors pcoumaricand coutaric acid (tartaric acid-esterified p-coumaric...
In recent years, many studies have focused on the molecular and biochemical mechanisms regulating the development of wine grapes. The course of grape berry development is directed by genetic design and is mediated by phytohormones, which regulate grape berry growth and development by orchestrating a complex network of interacting genes,...
Host-parasite interactions between the pathogen, Sphaerulina musiva, and its host, Populus spp., were examined in a series of studies. In the first study, variation in resistance of Populus nigra from 7 locations in Europe was differentiated based on the parameters cankers per cm and disease severity score. The analysis evaluated...
Humans have drastically altered the physical habitat and food web structure of stream ecosystems. Two major impacts humans have had on Pacific Northwest streams are modification of streamside forests (as a result of agriculture, land development, and timber harvest), and declines in the return of wild anadromous salmon to headwater...
This dissertation presents results from three studies that address major scientific questions in glacial geology and paleoclimatology for the late Pleistocene and Holocene using relatively new geochemical and statistical techniques. Each of the studies attempts to answer a longstanding question in the respective field using geochemical or statistical methods that...
The information in this report is for the purpose of informing cooperators in industry, colleagues at other universities, and others of the results of research in field crops. Reference to products and companies in this publication is for specific information only and does not endorse or recommend that product or...
Enacted in 1966 and effective July 4, 1967, the Freedom of Information Act (FOIA) gives people, both citizens and non-citizens, the right to request access to federal executive branch agency records. According to FOIA’s website, provided by the United States Department of Justice, FOIA “is a law that gives you...
The television show South Park, created by Trey Parker and Matt Stone, is viewed by millions of people each week, regularly addresses a number of controversial issues and plays a major role in contemporary popular culture. Current academic research acknowledges Parker and Stone's willingness to attack the dominant views surrounding...
The Integrated Landscape Assessment Project (ILAP) was a multi-year effort to produce information, maps, and models to help land managers, policy-makers, and others conduct mid- to broad-scale (e.g., watersheds to states and larger areas) prioritization of land management actions, perform landscape assessments, and estimate cumulative effects of management actions for...
More women compete in sports currently than ever before. However, the historical tensions which relate to their participation--as athletes and as females--remain. Mixed martial arts (MMA) has proven to be the most visible introduction of females into sports that have traditionally been considered exclusively for men. Gina Carano and Cristiane...
The authors present a facile, low-cost methodology to fabricate high-performance In-Ga-Zn-O (IGZO) bottom contact, bottom gate thin-film transistors (TFTs) by soft lithography. The IGZO channel and indium tin oxide (ITO) source and drain were patterned using microcontact printing of an octadecylphosphonic acid self-assembled monolayer (SAM). A polymer stamp was used...
Collaborative fisheries research provides a mechanism for integrating the unique knowledge, experience, and skills of fishermen and scientists. It is a joint intellectual endeavor that begins with the inception of a project and continues until its final stages, with each group having mutual investment in-and ownership of-the project. Collaborative fisheries...
There is a known relationship between total physical activity (PA) and weight status in children; however, there is a paucity of data examining the prospective relationship between school day PA and obesity among rural elementary school children. A large number of cross-sectional studies have demonstrated that higher levels of PA...
We examined the multivariate life-history trajectories of age 0 and age 1 female Gambusia affinis to determine relative effects of age-based and environment-based cues on reproductive investment. Age 0 females decreased reproductive investment prior to the onset of fall and winter months, while age 1 females increased reproductive investment as...
Focus is published by Oregon State University College of Forestry. Our goal is to keep Forestry alumni, friends, faculty, staff, and students informed about the College of Forestry and its many activities and programs.
Severe infection by the endemic myxozoan parasite, Ceratonova (synonym, Ceratomyxa) shasta, has been associated with declines in and impaired recovery efforts of populations of fall-run Chinook Salmon Oncorhynchus tshawytscha in the Klamath River, California. The parasite has a complex life cycle involving a polychaete worm host as well as a...
The Van der Pauw method for transport measurements of conductivity and carrier concentration were tested on indium-tin-oxide (ITO) films and silicon wafers, and then implemented on Cu10xAgxZn2Sb4S13 thin films. ITO was used as a test case for high temperature transport measurements because it a well characterized semi-metal. The mobility of...
The freshwater snail Biomphalaria glabrata serves as the intermediate host of the
blood fluke Schistosoma mansoni. Previous studies using the 13-16-R1 strain of B.
glabrata demonstrated an association between the gene encoding Cu/Zn superoxide
dismutase (SOD1) and susceptibility/resistance to the parasite. This association is
assumed to involve a polymorphism that...
The American beaver (Castor canadensis) was nearly extirpated by the late 1800's due to the fur trade. Due to reintroduction efforts, it now occupies much of its former range. Beavers are a keystone species and ecosystem engineers, greatly influencing riparian and instream habitats through selective harvesting of plant materials and...
Developing accurate predictive distribution models requires adequately representing relevant spatial and temporal scales, as these scales are ultimately reflective of the relationships between distributions and influential environmental conditions. In this research, we considered both spatial and temporal scale and the influence each has on predicting broad-scale distributions of two disparate...
Student engagement in a course plays a vital role in a student’s ability to process and construct knowledge. Student engagement research has investigated how students engage in and out of the classroom on a macro scale, through observation and survey data collection of large student populations, which lack focus on...
The United States spends about $2 billion each year fighting wildfires. While it is a costly operation, mechanized thinning of dense federal forests is one preventative strategy that generates high volumes of small logs. These small logs are often used for wood chips, pulp, or biomass because of the high...
DISCLAIMER
This report was prepared by students as part of a university course requirement. While considerable effort has been put into the project, it is not the work of licensed engineers and has not undergone the extensive verification that is common in the profession. The information, data, conclusions, and content...
Nisin, an amphiphilic, antimicrobial peptide, has been shown to integrate into the hydrophobic inner region of poly(ethylene oxide) (PEO) brush layers; however, the presence of integrated nisin may compromise the protein repulsive character of the PEO layer. In particular, the introduction of fibrinogen to nisin-loaded brush layers has been observed...
Supervision is an essential component of the development of pre-professional school counselors. Oftentimes, school counseling site supervisors are called upon to supervise graduate school counseling students without any requisite supervision training. The lack of supervision training is of significant professional concern, and there is an established need to translate recommended...
Estuaries, which provide viable habitat for a plethora of fish and invertebrate species, are being increasingly impacted by anthropogenic and natural forces. Estuaries are important nursery habitat for young-of-the-year (YOY) Pacific rockfish (Sebastes spp.). Yaquina Bay, a marine-dominated estuary on the central Oregon Coast, served as a study site for...
This dissertation outlines two approaches for improving the efficiency and reducing the cost of photovoltaic energy generation. First, the structures of known binary copper and iron compounds are used to choose the promising compositions Fe₂XS₄ (X = Si, Ge), Cu₃TaQ₄ (Q = Se, Te), and BaCuQ'F (Q' = S, Se,...
We monitored the distribution, abundance and productivity of the federally threatened Western SnowyPlover (Charadrius nivosus nivosus) along the Oregon coast from 5 April – 31 August 2016. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North and South Tahkenitch...
This study evaluated effects of Positive Action, a school-based social-emotional and character development (SECD) intervention, on indicators of positive youth development (PYD) among a sample of low-income, ethnic minority youth attending 14 urban schools. The study used a matched-pair, cluster-randomized controlled design at the school level. A multiple-measure self-report protocol...
Litter nutrient dynamics contribute significantly to biogeochemical cycling in forest ecosystems. We examined how site environment and initial substrate quality influence decomposition and nitrogen (N) dynamics of multiple litter types. A 2.5-year decomposition study was installed in the Oregon Coast Range and West Cascades using ¹⁵N-labeled litter from Acer macrophyllum,...
End-user programming has become widespread. The increasing size of this population and the prevalence of barriers that they face has sparked the development of approaches that promote end-user programing by helping them overcome barriers and teaching them programming. Despite the fact that these approaches have done well in achieving those...
Deciduous shrubs are an integral component of mixed conifer forests of the interior Pacific Northwest by providing structural complexity, forage, and niche habitat. Currently, these species are under pressure from high levels of ungulate herbivory and forest management activities such as fuels reduction treatments. Ungulate herbivory is influential in the...
School-aged children with disabilities have difficulty in meeting current physical activity guidelines (Stanish et al., 2019). As such, there is a need for providing effective physical activity promotion programs for school-aged children with disabilities. School settings can be the right place to promote physical activity for children with disabilities because...
Aqueous hydroxo Hf nanoclusters enable studies to identify and codify steps in the deposition of Hf-based oxide thin films from solution precursors. HfOCl2 reacts with combinations of H2O2(aq), acids, and TMAH to produce polymetal species at high pH and low pH. X-ray scattering and spectroscopic methods reveal the nature of...
Identifying habitat and spatial requirements of wildlife species across multiple spatial scales is a challenging, yet crucial component of wildlife management. Habitat use of bats is particularly difficult to study, and managing habitat to conserve bats is especially challenging because bats are highly vagile organisms that exploit several different types...
Adults with severe and persistent mental illness (SPMI) are overrepresented in the homeless population, and Oregon’s homeless population has expanded in recent years. In the 1950s, the mentally ill were moved out of the state hospitals and into the community. However, due to a lack of support services in the...
Newcomers’ seamless onboarding is important for open collaboration communi- ties, particularly those that leverage outsiders’ contributions to remain sustainable. Nevertheless, previous work shows that OSS newcomers often face several barriers to contribute, which lead them to lose motivation and even give up on contributing. A well-known way to help newcomers...
On June 21-22, 2011, the Independent Multidisciplinary Science Team (IMST) hosted a technical workshop for local and regional natural resource managers and practitioners in urban and rural-residential land uses. The purpose of the workshop was to discuss management and rehabilitation actions in developed areas that could improve watershed functions, aquatic...
Development of wave and offshore wind-based marine renewable energy is anticipated on the Outer Continental Shelf (OCS) off Oregon and much of the Pacific Northwest in the coming decade. Multiple issues related to environmental considerations and information needs remain for these emerging industries. The Oregon Marine Renewable Energy Environmental Science...
Carbon Nanotubes are a unique family of nanostructures that have shown remarkable promise for mechanical, electrical, and optical applications. Fundamentally similar to the earlier discovered Buckminsterfullerene (C₆₀), carbon nanotubes are hollow cylinders formed from a single sheet of carbon atoms. The research presented in this dissertation investigates several carbon nanotube...
Plant viruses have been instrumental in our understanding of the biophysical properties pertaining to non-enveloped icosahedral virus particles. A substantial amount of research has been performed over five decades on Turnip yellow mosaic virus (TYMV), arguably one of the most extensively studied icosahedral plant viruses and the type-member of the...
Snags provide critical habitat for nearly one-third of wildlife species in forests of the Pacific Northwest, so historic declines in snags are thought to have had a strong impact on biodiversity. Resource managers often create snags to mitigate the scarcity of snags within managed forests, but information regarding the function...
Generating annual revenue of over $4 billion dollars (The Collegiate Licensing Company, n.d.), the collegiate licensing presents a potential market that both apparel companies and universities can benefit from. While the collegiate licensing business is expected to increase financial resources for the participating universities and textiles and apparel companies, little...
Current literature supports the benefits of participation in extracurricular activities(Barnett & Weber, 2008). However, a report from the U.S. Government AccountabilityOffice (GAO) found that students with disabilities participated in athletics to varyingdegrees, but at consistently lower rates than students without disabilities (US GovernmentAccountability Office, 2010). In January 2013, in response...
Freeze desalination poses as a potential solution to many of the issues that accompany current desalination methods. The research detailed in this manuscript involves creating and analyzing a numerical model of the freezing operation of an indirect contact freeze-melting (FM) desalination system. In this initial analysis, pure water is frozen...
This case study examines the Upper Klamath Basin of Oregon, which is experiencing a water crisis due to over-allocation. The purpose of this case study is to identify land cover / land use change looking specifically at wetland conversion and to discussion the effects of wetland loss on ecosystem services....
As screen resolution and video decoding capability have increased, high-definition (HD) video in resolutions as high as 1920 x 1080 is rapidly becoming the standard. Ad-hoc streaming of HD video over 802.11 wireless networks, e.g., streaming from a mobile device to a television, is convenient for users, but is hampered...
The 2011 M[subscript W] = 9.0 Tohoku-oki earthquake generated a large number of unique soil liquefaction case histories, including cases with strong ground motion recordings on liquefiable or potentially liquefiable soils. We have compiled a list of 22 strong motion stations (SMS) where surface evidence of liquefaction was observed and...
Low-dimensional electronic materials offer a platform to observe biological processes with unprecedented spatial and temporal resolution. Carbon nanotubes (CNTs) are the closest physical analog to an ideal 1D system and can be scaled and integrated into multiplexed electronic circuitry. The molecular structure of a CNT is also biocompatible, making them...
Classroom-based physical activity (CBPA) breaks are a common and cost-effective physical activity (PA) promotion strategy at elementary schools. Nevertheless, there is limited research examining how teacher-level factors such as value for PA and perceived support to deliver CBPA breaks influence teacher implementation of CBPA breaks. In addition, to date no...
Over the past three years recreational cannabis legalization has emerged as a major policy issue in the United States. The novelty of this movement has created a gap in the state of literature focusing on the examination of cannabis legalization policy processes. Using a two-pronged Multiple Streams approach, this study...
Intensive forest management (IFM, dense conifer plantings and herbicide applications) may alter the characteristics of early seral plant communities that function as major habitat resources for a host of wildlife species, including cervid herbivores such as Cervus elaphus and Odocoileus hemionus. Such large herbivores can also substantially affect plant community...
This paper introduces a new perspective/direction on assessing and encouraging creativity in concept
design for application in engineering design education and industry. This research presents several
methods used to assess the creativity of similar student designs using metrics and judges to determine
which product is considered the most creative. Two...
Dams are often promoted as a tool to reduce poverty and spur economic development. Dam construction worldwide, and particularly in China, which has built nearly half the world's large dams since 1949, remains contentious due to the potential for negative environmental and socioeconomic impacts. Despite numerous case studies, there is...
Eukaryotic small RNA (~20-30 nucleotides) are diverse regulatory molecules that repress gene expression at the transcriptional and post-transcriptional levels, defend hosts against invading viruses and defend genomes against selfish DNA elements. Small RNA populations are studied by high-throughput sequencing of the total small RNA fraction isolated from cells, however, the...
Forests are some of the most ecologically diverse and dense habitats on the planet. Research shows that the endophyte community, or the fungi, bacteria, and viruses within a forest ecosystem is highly diverse. Fungal endophytes are defined as fungi that live within the tissues of host plants. Relationships between fungal...
This dissertation addresses issues concerning the behavior of firms, which has significant effects on performance. In the first study, we empirically investigate the effect of the reduction in number of firms on price competition in the U.S. macro-brewing industry. The number of macro brewing firms decreased from 766 in 1935...
The Wetland Reserve Program (WRP) is one conservation tool that mitigates national wetland loss and a primary goal for the program includes optimizing wildlife habitat by restoring wetland functions and values. Few studies have evaluated the WRP, which limits our understanding of its impact on wildlife populations. I assessed the...
Moisture content management is a key requirement to improve forest harvest residue economics for bioenergy production. This dissertation aims to contribute towards better management through these three general objectives (1) Determine average moisture content of fresh forest harvest residues and its changes over the different seasons of the year, focusing...
Wetland restoration success in attaining wildlife conservation goals can be confounded by the presence of multiple biological invaders. Wetland management activities typically target invasive plants, but bottom-up responses of higher trophic levels in novel communities are difficult to predict. We surveyed plant and amphibian assemblages at 26 sites enrolled in...
The purpose of this study was to discover the routes to certification and turnover intentions of Wisconsin agriculture teachers with fewer than three years of experience teaching agriculture. The study also evaluated the relationship between the routes to certification and turnover intentions. A census of all Wisconsin agriculture teachers with...
Bird and bat mortalities caused by interactions with wind turbines is a critical concern that requires addressing for conservation purposes. Deploying a low cost sensor array will be instrumental during site permitting, conducting impact assessments of existing wind farms, and assessing efficacy of wildlife mortality mitigation or wildlife deterrent technologies....
The purpose of this research is to hydraulically characterize an engineered wetland in Albany, Oregon. The wetland receives treated wastewater from both Albany Millersburg Water Reclamation Facility (AMWRF) and ATI Wah Chang. AMWRF's water is municipal waste water. ATI Wah Chang's water comes from its nearby metal processing plant. The...
In contrast with other Odocoileus species, Columbian black-tailed deer (Odocoileus hemionus columbianus) population dynamics are not well understood throughout the species’ range. Concerns over apparent long-term population declines have prompted efforts to fill basic knowledge gaps including estimates of vital rates (fecundity, recruitment and survival) and cause-specific mortality. The Oregon...
Releasing hatchery reared salmon and steelhead to supplement threatened and endangered populations is a widely used conservation tool. One issue with this strategy is hatchery fish have lower reproductive fitness than wild fish when spawning in the wild. One of the drivers of fitness loss in steelhead is adaptation to...
Douglas-fir provides social, economic, and ecological benefits in the Pacific Northwest (PNW). In addition to timber, forests support abundant plant and animal biodiversity and provide socioeconomic viability for many rural communities. Products derived from Douglas-fir account for approximately 17% of the U.S. lumber output with an estimated value of $1.9...
Active tectonics of a deformation front constrains the kinematic evolution and structural interaction between the fold-thrust belt and the most-recently accreted foreland basin. At the Himalayan deformation front, the thrust front is blind, characterized by a broad fold (the Suruin-Mastgarh anticline (SMA)), and displays no emergent faults cutting the southern...
Mouthfeel is one of the most important quality parameters of Chardonnay wines. Malolactic fermentation (MLF) is an important process in wine production, and influential to wine mouthfeel, with the reduction in acidity being particularly important for cool climate wines that generally have higher acidity such as Chardonnay. MLF is typically...
This dissertation explores the engineering of carbon nanotube electronic devices using atomic force microscopy (AFM) based techniques. A possible application for such devices is an electronic interface with individual biological molecules. This single molecule biosensing application is explored both experimentally and with computational modeling.
Scanning probe microscopy techniques, such as...
Passive sampling devices have been used for decades to measure complex mixtures of bioavailable organic chemicals in a variety of environmental media. More recently passive sampler applications have expanded beyond monitoring chemical concentrations, and this dissertation continues to advance methods of passive sampling on many fronts. Despite their growing use,...
In the past two decades, occurrences of summertime upwelling-driven low dissolved oxygen (DO) events, or hypoxia, have increased along the northeast Pacific coast. If hypoxic events are severe enough to cause marine species mortality, the areas affected are often called "dead zones." In 2002 and again in 2006, the events...
The subject of this PhD thesis is part of a research domain of great present interest in new semiconductor materials for photovoltaic and thermoelectric applications. This domain contains the elaboration and the study of both Cu-based chalcogenides bulk and thin-film samples, driven by materials design principles.
One of the most...
From 5 April – 21 September 2012 we monitored the distribution, abundance and productivity of the federally Threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North Tahkenitch Creek,...
Climate exerts considerable control on wildfire regimes, and climate and wildfire are both major drivers of forest growth and succession in interior Northwest forests. Estimating potential response of these landscapes to anticipated changes in climate helps researchers and land managers understand and mitigate impacts of climate change on important ecological...
From 6 April – 19 September 2011 we monitored the distribution, abundance and productivity of the federally Threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North Tahkenitch Creek,...
From 6 April – 19 September 2011 we monitored the distribution, abundance and productivity of the federally Threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North Tahkenitch Creek,...
Freshwater cyanobacterial blooms are a nuisance and health threat in the Pacific Northwest. The accepted methods of characterizing these blooms by microscopic cell counts cannot differentiate between toxic and non-toxic strains of the cyanobacterium Microcystis. Also, there is limited understanding of freshwater cyanophage that may control bloom dynamics. In order...
Modern day digital systems employ frequency
synthesizers to provide a common clock to the system.
They are undergoing large scale integration due to which, mitigation
of the effect of noise on power supply has become a major design consideration
in clocking circuits. Rapid scaling of CMOS technology mandates the
design...
Bedrock meandering rivers are sinuous channels that pair steep bedrock outside banks with lower gradient slip-off slopes on the inside of bends. These rivers have the potential to record information on climatic and tectonic “external” forcings in their morphology (e.g., longitudinal profiles, strath terraces, channel and valley dimensions). However, geology...