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Bresenhan, Thomas Patrick
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2010-2019
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- Creator:
- Flynn, Patrick Thomas
- Abstract:
- The bacteria Myxococcus xanthus clusters into fruiting bodies in the absence of food. The movement of M. xanthus has three aspects: self-propulsion (run), change of direction due to collision (tumble), and Brownian fluctuations in movement. We propose a minimalist PDE model for the concentrations of left and right moving agents...
- Resource Type:
- Honors College Thesis
- Full Text:
- Myxococcus xanthus By Patrick Flynn A THESIS submitted to Oregon State University University Honors
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- Creator:
- Nayfach, Stephen, Bradley, Patrick H., Wyman, Stacia K., Laurent, Timothy J., Williams, Alex, Eisen, Jonathan A., Pollard, Katherine S., and Sharpton, Thomas J.
- Abstract:
- Shotgun metagenomic DNA sequencing is a widely applicable tool for characterizing the functions that are encoded by microbial communities. Several bioinformatic tools can be used to functionally annotate metagenomes, allowing researchers to draw inferences about the functional potential of the community and to identify putative functional biomarkers. However, little is...
- Resource Type:
- Article
- Full Text:
- Metagenomes Stephen Nayfach1, Patrick H. Bradley1, Stacia K. Wyman1, Timothy J. Laurent1¤, Alex Williams1
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- Creator:
- Mohammadi, Mohsen, Blake, Thomas K., Budde, Allen D., Chao, Shiaoman, Hayes, Patrick M., Horsley, Richard D., Obert, Donald E., Ullrich, Steven E., and Smith, Kevin P.
- Abstract:
- We report malt quality QTLs relevant to breeding with greater precision than previous mapping studies. The distribution of favorable alleles suggests strategies for marker-assisted breeding and germplasm exchange. This study leverages the breeding data of 1,862 barley breeding lines evaluated in 97 field trials for genome-wide association study of malting...
- Resource Type:
- Article
- Full Text:
- programs Mohsen Mohammadi · Thomas K. Blake · Allen D. Budde · Shiaoman Chao · Patrick M. Hayes · Richard
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- Creator:
- Estep, Laura K., McClure, Christopher J. W., Vander Kelen, Patrick, Burkett-Cadena, Nathan D., Sickerman, Stephen, Hernandez, José, Jinright, Joseph, Hunt, Brenda, Lusk, John, Hoover, Victor, Armstrong, Keith, Stark, Lillian M., Hill, Geoffrey E., and Unnasch, Thomas R.
- Abstract:
- For a variety of infectious diseases, the richness of the community of potential host species has emerged as an important factor in pathogen transmission, whereby a higher richness of host species is associated with a lowered disease risk. The proposed mechanism driving this pattern is an increased likelihood in species-rich...
- Resource Type:
- Article
- Full Text:
- . McClure2, Patrick Vander Kelen3, Nathan D. Burkett-Cadena3, Stephen Sickerman4, José Hernandez4, Joseph
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- Creator:
- Fischer, A. Paige, Spies, Thomas A., Steelman, Toddi A., Moseley, Cassandra, Johnson, Bart R., Bailey, John D., Ager, Alan A., Bourgeron, Patrick, Charnley, Susan, Collins, Brandon M., Kline, Jeffrey D., Leahy, Jessica E., Littell, Jeremy S., Millington, James D. A., Nielsen-Pincus, Max, Olsen, Christine S., Paveglio, Travis B., Roos, Christopher I., Steen-Adams, Michelle M., Stevens, Forrest R., Vukomanovic, Jelena., White, Eric M., and Bowman, David M. J. S.
- Abstract:
- Wildfire risk in temperate forests has become a nearly intractable problem that can be characterized as a socioecological “pathology”: that is, a set of complex and problematic interactions among social and ecological systems across multiple spatial and temporal scales. Assessments of wildfire risk could benefit from recognizing and accounting for...
- Resource Type:
- Article
- Full Text:
- Bailey5, Alan A Ager6, Patrick Bourgeron7, Susan Charnley8, Brandon M Collins9, Jeffrey D Kline2, Jessica
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- Creator:
- Clark, Peter U., Shakun, Jeremy D., Baker, Paul A., Bartlein, Patrick J., Brewer, Simon, Brook, Edward J., Carlson, Anders E., Cheng, Hai, Kaufman, Darrell S., Liu, Zhengyu, Marchitto, Thomas M., Mix, Alan C., Morrill, Carrie, Otto-Bliesner, Bette L., Pahnke, Katharina, Russell, James M., Whitlock, Cathy, Adkins, Jess F., Blois, Jessica L., Clark, Jorie, Colman, Steven M., Curry, William B., Flower, Ben P., He, Feng, Johnson, Thomas C., Lynch-Stieglitz, Jean, Markgraf, Vera, McManus, Jerry, Mitrovica, Jerry X., Moreno, Patricio I., and Williams, John W.
- Abstract:
- Deciphering the evolution of global climate from the end of the Last Glacial Maximum approximately 19 ka to the early Holocene 11 ka presents an outstanding opportunity for understanding the transient response of Earth's climate system to external and internal forcings. During this interval of global warming, the decay of...
- Resource Type:
- Article
- Full Text:
- deglaciation Peter U. Clarka,1, Jeremy D. Shakunb,1, Paul A. Bakerc, Patrick J. Bartleind, Simon Brewere, Ed
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- Creator:
- Alford, Matthew H., Peacock, Thomas, MacKinnon, Jennifer A., Nash, Jonathan D., Buijsman, Maarten C., Centurioni, Luca R., Chao, Shenn-Yu, Chang, Ming-Huei, Farmer, David M., Fringer, Oliver B., Fu, Ke-Hsien, Gallacher, Patrick C., Graber, Hans C., Helfrich, Karl R., Jachec, Steven M., Jackson, Christopher R., Klymak, Jody M., Ko, Dong S., Jan, Sen, Johnston, T. M. Shaun, Legg, Sonya, Lee, I-Huan, Lien, Ren-Chieh, Mercier, Matthieu J., Moum, James N., Musgrave, Ruth, Park, Jae-Hun, Pickering, Andrew I., Pinkel, Robert, Rainville, Luc, Ramp, Steven R., Rudnick, Daniel L., Sarkar, Sutanu, Scotti, Alberto, Simmons, Harper L., St. Laurent, Louis C., Venayagamoorthy, Subhas K., Wang, Yu-Huai, Wang, Joe, Yang, Yiing J., Paluszkiewicz, Theresa, and Tang, Tswen-Yung (David)
- Abstract:
- Internal gravity waves, the subsurface analogue of the familiar surface gravity waves that break on beaches, are ubiquitous in the ocean. Because of their strong vertical and horizontal currents, and the turbulent mixing caused by their breaking, they affect a panoply of ocean processes, such as the supply of nutrients...
- Resource Type:
- Article
- Full Text:
- . Fringer9, Ke-Hsien Fu10, Patrick C. Gallacher11, Hans C. Graber12, Karl R. Helfrich13, Steven M. Jachec14
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- Creator:
- Laurance, William F., Useche, D. Carolina, Rendeiro, Julio, Kalka, Margareta, Bradshaw, Corey J. A., Sloan, Sean P., Laurance, Susan G., Campbell, Mason, Abernethy, Kate, Alvarez, Patricia, Arroyo-Rodriguez, Victor, Ashton, Peter, Benitez-Malvido, Julieta, Blom, Allard, Bobo, Kadiri S., Cannon, Charles H., Cao, Min, Carroll, Richard, Chapman, Colin, Coates, Rosamond, Cords, Marina, Danielsen, Finn, De Dijn, Bart, Dinerstein, Eric, Donnelly, Maureen A., Edwards, David, Edwards, Felicity, Farwig, Nina, Fashing, Peter, Forget, Pierre-Michel, Foster, Mercedes, Gale, George, Harris, David, Harrison, Rhett, Hart, John, Karpanty, Sarah, Kress, W. John, Krishnaswamy, Jagdish, Logsdon, Willis, Lovett, Jon, Magnusson, William, Maisels, Fiona, Marshall, Andrew R., McClearn, Deedra, Mudappa, Divya, Nielsen, Martin R., Pearson, Richard, Pitman, Nigel, van der Ploeg, Jan, Plumptre, Andrew, Poulsen, John, Quesada, Mauricio, Rainey, Hugo, Robinson, Douglas, Roetgers, Christiane, Rovero, Francesco, Scatena, Frederick, Schulze, Christian, Sheil, Douglas, Struhsaker, Thomas, Terborgh, John, Thomas, Duncan, Timm, Robert, Urbina-Cardona, J. Nicolas, Vasudevan, Karthikeyan, Wright, S. Joseph, Arias-G, Juan Carlos, Arroyo, Luzmila, Ashton, Mark, Auzel, Philippe, Babaasa, Dennis, Babweteera, Fred, Baker, Patrick, Banki, Olaf, Bass, Margot, Bila-Isia, Inogwabini, Blake, Stephen, Brockelman, Warren, Brokaw, Nicholas, Bruehl, Carsten A., Bunyavejchewin, Sarayudh, Chao, Jung-Tai, Chave, Jerome, Chellam, Ravi, Clark, Connie J., Clavijo, Jose, Congdon, Robert, Corlett, Richard, Dattaraja, H. S., Dave, Chittaranjan, Davies, Glyn, Beisiegel, Beatriz de Mello, da Silva, Rosa de Nazarepaes, Di Fiore, Anthony, Diesmos, Arvin, Dirzo, Rodolfo, Doran-Sheehy, Diane, Eaton, Mitchell, Emmons, Louise, Estrada, Alejandro, Ewango, Corneille, Fedigan, Linda, Feer, Francois, Fruth, Barbara, Willis, Jacalyn Giacalone, Goodale, Uromi, Goodman, Steven, Guix, Juan C., Guthiga, Paul, Haber, William, Hamer, Keith, Herbinger, Ilka, Hill, Jane, Huang, Zhongliang, Sun, I. Fang, Ickes, Kalan, Itoh, Akira, Ivanauskas, Natalia, Jackes, Betsy, Janovec, John, Janzen, Daniel, Jiangming, Mo, Jin, Chen, Jones, Trevor, Justiniano, Hermes, Kalko, Elisabeth, Kasangaki, Aventino, Killeen, Timothy, King, Hen-biau, Klop, Erik, Knott, Cheryl, Kone, Inza, Kudavidanage, Enoka, Ribeiro, Jose Lahoz da Silva, Lattke, John, Laval, Richard, Lawton, Robert, Leal, Miguel, Leighton, Mark, Lentino, Miguel, Leonel, Cristiane, Lindsell, Jeremy, Ling-Ling, Lee, Linsenmair, K. Eduard, Losos, Elizabeth, Lugo, Ariel, Lwanga, Jeremiah, Mack, Andrew L., Martins, Marlucia, McGraw, W. Scott, McNab, Roan, Montag, Luciano, Thompson, Jo Myers, Nabe-Nielsen, Jacob, Nakagawa, Michiko, Nepal, Sanjay, Norconk, Marilyn, Novotny, Vojtech, O'Donnell, Sean, Opiang, Muse, Ouboter, Paul, Parker, Kenneth, Parthasarathy, N., Pisciotta, Katia, Prawiradilaga, Dewi, Pringle, Catherine, Rajathurai, Subaraj, Reichard, Ulrich, Reinartz, Gay, Renton, Katherine, Reynolds, Glen, Reynolds, Vernon, Riley, Erin, Roedel, Mark-Oliver, Rothman, Jessica, Round, Philip, Sakai, Shoko, Sanaiotti, Tania, Savini, Tommaso, Schaab, Gertrud, Seidensticker, John, Siaka, Alhaji, Silman, Miles R., Smith, Thomas B., de Almeida, Samuel Soares, Sodhi, Navjot, Stanford, Craig, Stewart, Kristine, Stokes, Emma, Stoner, Kathryn E., Sukumar, Raman, Surbeck, Martin, Tobler, Mathias, Tscharntke, Teja, Turkalo, Andrea, Umapathy, Govindaswamy, van Weerd, Merlijn, Rivera, Jorge Vega, Venkataraman, Meena, Venn, Linda, Verea, Carlos, de Castilho, Carolina Volkmer, Waltert, Matthias, Wang, Benjamin, Watts, David, Weber, William, West, Paige, Whitacre, David, Whitney, Ken, Wilkie, David, Williams, Stephen, Wright, Debra D., Wright, Patricia, Xiankai, Lu, Yonzon, Pralad, and Zamzani, Franky
- Abstract:
- The rapid disruption of tropical forests probably imperils global biodiversity more than any other contemporary phenomenon¹⁻³. With deforestation advancing quickly, protected areas are increasingly becoming final refuges for threatened species and natural ecosystem processes. However, many protected areas in the tropics are themselves vulnerable to human encroachment and other environmental...
- Resource Type:
- Article
- Full Text:
- , Patrick Baker51, Olaf Banki52, Margot Bass53, Inogwabini Bila-Isia54, Stephen Blake29, Warren Brockelman55