The objective of this dissertation was to examine trade-offs and synergies between multiple ecosystem services derived from plantation forests in the coastal Pacific Northwest. I accomplished this in five chapters. In the first chapter I provided background information for the study. In the next chapter I set the context for...
Coral reefs have become vulnerable to climate change, with mass bleaching events, the loss of symbiotic algae (Symbiodiniaceae), increasing in both frequency and severity. As climate change continues to threaten the persistence and existence of coral reefs around the world, the biggest question posed for coral reefs is “can they...
Classic biological control can be a powerful option for those tasked with managing biological invasions; however, some biocontrol releases lead to non-target attack – feeding, damage or development on species other than the target species. The cinnabar moth, Tyria jacobaeae L. (Lepidoptera: Erebidae) was introduced to Western Oregon as a...
Forests and forest soils are some of the largest biologically active carbon reservoirs in the world. Therefore, understanding how disturbances, such as forest harvest, influence biogeochemical cycling is particularly important for managing forests sustainably. Timber harvest can have large impacts on forest soils, which may affect the long-term productivity and...
Biotic and abiotic processes at continent-ocean interfaces cycle a disproportionate mass of carbon and nutrients relative to their global surface area, and microbial activity is a principal determinant of organic and inorganic matter flux in these transition zones. Most studies using modern high-throughput ‘omics techniques to link microorganisms with costal...
This dissertation seeks to contribute to a growing body of research on student outcomes by way of a public health perspective examining the intersection of education policy and adolescent mental health and well-being. The conceptual approach underpinning this project rests on the key theoretical assumption that education policy, shaped at...
RNA structure prediction is a challenging problem, especially with pseudoknots. Recently, there has been a shift from the classical minimum free energy-based methods (MFE) to partition function-based ones that assemble structures based on base-pairing probabilities. Two typical examples of the latter group are the popular maximum expected accuracy (MEA) method...
Potato (Solanum tuberosum L.) is among one of the largest and most important staple food crops in the world. One of the most productive growing potato regions is the USA is the Oregon and Washington Columbia Basin. Both states produce approximately 26% of the USA potatoes in the market. In...
Heavy biodegraded crude oils have larger numbers of coeluting compounds than non- biodegraded oils, and they are typically not resolved with conventional gas chromatography (GC). This unresolved complex mixture (UCM) has been investigated using comprehensive two- dimensional gas chromatography-time-of-flight mass spectrometry (GCxGC-ToFMS) within a set of biodegraded petroleums derived from...
In a process called quorum sensing (QS), the bacterial pathogen Pseudomonas aeruginosa uses small diffusible signals to coordinate cooperative behaviors via secreted “public goods”. Under QS-dependent growth conditions, social cheaters arise with mutations in lasR, the gene for the primary QS signal receptor. These cheaters do not produce public goods....