Index Catalog // ScholarsArchive@OSU

Creator:: Gallagher, Brett, Heppell, Scott, and Heppell, Selina
Abstract:: Marine Team is a student effort to examine spatial and temporal variation of fish species within Yaquina Bay. Marine Team was developed at OSU as a seminar course with a field sampling component, to help students of marine ecology get “hands on” experience with data collection and analysis. We set...
Resource Type:: Presentation
Full Text:: Marine Team: Student-led Investigations in Marine Science Brett GallagherBrett Gallagher Scott

Creator:: Tyler, Brett M.
Abstract:: The Taskforce on Interdisciplinary Graduate Education Programs was given the mission to examine interdisciplinary graduate education programs at a range of institutions around the US, and to identify successful models that could inform the revitalization of interdisciplinary graduate education at Oregon State University. The taskforce examined programs at 29 universities...
Resource Type:: Technical Report
Full Text:: : Brett M. Tyler, Chair (Director, Center for Genome Research and Biocomputing; member, Molecular and

Creator:: Fang, Yufeng and Tyler, Brett M.
Abstract:: Phytophthora sojae is an oomycete pathogen of soybean. As a result of its economic importance, P. sojae has become a model for the study of oomycete genetics, physiology and pathology. The lack of efficient techniques for targeted mutagenesis and gene replacement have long hampered genetic studies of pathogenicity in Phytophthora species....
Resource Type:: Article
Full Text:: an effector gene in the oomycete Phytophthora sojae using CRISPR/Cas9 YUFENG FANG1,2 AND BRETT M

Creator:: Dumbauld, Brett R., Hosack, Geoffrey R., and Bosley, Katelyn M.
Abstract:: Structured estuarine habitats, such as salt marshes, seagrass beds, and oyster reefs, are recognized as critical nurseries for juvenile fish and crustaceans. Estuarine habitat usage by fish, including juvenile Pacific salmon Oncorhynchus spp., was characterized by sampling with a modified tow net in Willapa Bay, Washington, where 20% of the...
Resource Type:: Article

Creator:: Bollmann, Stephanie R., Press, Caroline M., Tyler, Brett M., and Grunwald, Niklaus J.
Abstract:: Modulation of gene expression through RNA interference is well conserved in eukaryotes and is involved in many cellular processes. In the oomycete Phytophthora, research on the small RNA machinery and function has started to reveal potential roles in the pathogen, but much is still unknown. We examined Argonaute (AGO) homologs...
Resource Type:: Article
Full Text:: †, Caroline M. Press1, Brett M. Tyler2 and Niklaus J. Grünwald1* 1 Horticultural Crop Research Unit

Creator:: Bollmann, Stephanie R., Fang, Yufeng, Press, Caroline M., Tyler, Brett M., and Grünwald, Niklaus J.
Abstract:: Gene regulation by small RNA pathways is ubiquitous among eukaryotes, but little is known about small RNA pathways in the Stramenopile kingdom. Phytophthora a genus of filamentous oomycetes, contains many devastating plant pathogens, causing multibillion-dollar damage to crops, ornamental plants, and natural environments. The genomes of several oomycetes including Phytophthora...
Resource Type:: Article
Full Text:: . Bollmann 1 †, Yufeng Fang 2, 3, Caroline M. Press 1, Brett M. Tyler 2 and Niklaus J. Grünwald 1, 2

Creator:: Bosley, Katelyn M., Copeman, Louise A., Dumbauld, Brett R., and Bosley, Keith L.
Abstract:: Two species of burrowing shrimp occur in high densities in US West Coast estuaries, the ghost shrimp, Neotrypaea californiensis, and the blue mud shrimp, Upogebia pugettensis. Both species of shrimp are considered ecosystem engineers as they bioturbate and irrigate extensive galleries within the sediment. While their burrows comprise a dominant...
Resource Type:: Article

Creator:: Purwantini, Endang, Torto-Alalibo, Trudy, Lomax, Jane, Setubal, João C., Tyler, Brett M., and Mukhopadhyay, Biswarup
Abstract:: Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change. Biological CH₄ production or methanogenesis is mostly performed by methanogens, a group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂ plus...
Resource Type:: Article

Creator:: Torto-Alalibo, Trudy, Purwantini, Endang, Lomax, Jane, Setubal, João C., Mukhopadhyay, Biswarup, and Tyler, Brett M.
Abstract:: Dramatic increases in research in the area of microbial biofuel production coupled with high-throughput data generation on bioenergy-related microbes has led to a deluge of information in the scientific literature and in databases. Consolidating this information and making it easily accessible requires a unified vocabulary. The Gene Ontology (GO) fulfills...
Resource Type:: Article
Full Text:: , João C. Setubal 2,4 , Biswarup Mukhopadhyay1,2,5 and Brett M. Tyler 2,6* 1 Department of Biochemistry

Creator:: Ye, Wenwu, Wang, Yang, Dong, Suomeng, Tyler, Brett M., and Wang, Yuanchao
Abstract:: BACKGROUND: Basic leucine zipper (bZIP) transcription factors are present exclusively in eukaryotes and constitute one of the largest and most diverse transcription factor families. The proteins are responsible for central developmental and physiological processes in plants, animals, and fungi, including the pathogenicity of fungal plant pathogens. However, there is limited...
Resource Type:: Article

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