Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
This thesis consists of five chapters: a general introduction, two manuscripts, a collection of published lesson plans, and a general conclusion. The works collected herein are united by the common theme of practical applications in plant breeding. The first manuscript reports a study performed on five malting barley lines grown...
Spotted lanternfly (Lycorma delicatula) is an invasive insect that was first discovered in Pennsylvania in 2014, and has since spread across the Northeastern United States. States in the Northeast have created quarantine zones, regulations, outreach, reporting systems, and management efforts for the control of spotted lanternfly. Despite states’ efforts, spotted...
We consider three problems on simplicial complexes: the Optimal Bounded Chain Problem, the Optimal Homologous Chain Problem, and 2-Dim-Bounded-Surface. The Optimal Bounded Chain Problem asks to find the minimum weight d-chain in a simplicial complex K bounded by a given (d−1)-chain, if such a d-chain exists. The Optimal Homologous Chain...
Gene expression is largely regulated by the binding of transcription factors to short sequences of DNA (transcription factor binding sites) to drive or repress transcription of an adjacent gene. Identifying the key transcription factor binding sites associated with a particular biological outcome provides an avenue for tailored transcriptional regulation in...
Managers of forest and plantation ecosystems are encountering growing problems involving plant pathogens and the expanding geographic ranges of these pathogens. Historically unexposed stands are exceptionally vulnerable when a non-native pathogen is introduced because these pathogens can cause devastating disease in a host population that lacks co-evolved resistance mechanisms. One...
Specialized or secondary metabolism is a collection of pathways and small molecules that, while beneficial to an organism, are not strictly necessary for survival. Plants use secondary metabolites to, among other things, attract pollinators, defend against biotic and abiotic stressors, and form symbioses. Natural products from plants have seen an...
N-ary relationships, which relate N entities where N is not necessarily two, are omnipresent in real life. In this thesis, we develop a visualization technique for N-ary relationships.
First, we propose a visual metaphor that utilizes vertices and polygons to represent entities and N-ary relationships. Based on this visual metaphor,...
The following thesis consists of four sections: a general introduction, two manuscripts, a general conclusion, and an overall bibliography. The two manuscripts report on: (1) discussing the prospects of developing a perennial malting barley and potential alternative sustainable crop management practices and (2) further exploring the contributions of barley variety...
Investigation on barley genotype contribution to beer flavor is a relatively new area of research but has interest from members of the malting barley supply chain. This body of work builds upon previous studies by approaching it from new angles that further supports the malting and brewing industries’ interests around...