The purpose of this study was to understand the vulnerability and adaptive capacity of shellfish stakeholders in the Pacific Northwest who are adapting to ocean acidification (OA). This study developed a geovisualization tool of existing environmental data for assessing species-specific risk profiles to OA (based on their exposure and sensitivity),...
Interest is expanding for the potential role of estuaries, particularly seagrass and salt marsh habitats, to sequester carbon, mitigate ocean acidification, and support abundant fisheries. The important functions of estuaries are part of a broader set of ecosystem services, or benefits to humans, which are regulated by ocean and watershed...
The purpose of this study was to understand the lived experience of students to discern the impact of their interaction with the food pantry. This knowledge may, in turn, influence future food pantry methods and wider policy, both at PNW College and more broadly. Not only does student hunger have...
Changes to disturbance regimes resulting from shifts in forest management practices have created novel landscape conditions in the Pacific Northwest (PNW). I analyzed the implications of changes to landscape conditions caused by forest management for the spread of a native root disease: black stain root disease (BSRD) of Douglas-fir. BSRD...
Food waste (FW), brewery waste (BW), and fats, oils, and greases (FOG), are prevalent waste streams in municipalities across the country, particularly in the Pacific Northwest (PNW). Anaerobic digestion (AD), the microbial-mediated transformation of organic waste into methane-rich biogas, offers a sustainable, energy-generating, waste management solution for these wastes. Anaerobic...
Forest Vegetation Management (VM) is an important tool used in the Pacific Northwest (PNW) for reforestation. It has been well documented that VM increases seedling survival and crop tree volume growth. What is less understood, is how altering the plant community and successional trajectory affects the way the ecosystem uses...
Dual use pasture systems, sometimes referred to as dual purpose pasture systems, take advantage of the land being used to maximize multiple outputs from a single area. Developing a system to support both production of grazing livestock as well as pollinator health is of increasing importance in pasture-based farming systems....
Coniferous trees are a major North American crop that has been intensively managed for its commercial value, while also serving as critical habitat for abundant wildlife and as carbon sinks. Having diverse functions, North American temperate coniferous forests have become a research hotspot for numerous scientific studies aiming to integrate...
Forest plantations in the Pacific Northwest are highly productive and have been intensively managed to maximize tree growth with practices such as Forest Vegetation Management (FVM). Different FVM regimes have been shown to enhance forest establishment by reducing the competition between the planted seedlings and early-seral vegetation. To better understand...
Technological growth in agriculture increases crop output but it could lower output price in the market. Economic impact assessment in ex-ante analysis usually does not include these indirect supply responses, which can overestimate the economic potential of new technology. This dissertation provides an integrated farm-level ex-ante impact assessment model to...
Coastal hypoxia, or low oxygen episodes pose a threat to marine resources in the Pacific Northwest. Previous research into nearshore oxygen dynamics have linked coastal upwelling to this seasonally occurring phenomenon, however the manifestation of hypoxic waters over coastal fishing grounds was not well understood. Through a partnership with Dungeness...
Shell-boring polychaetes pose economic risks for oyster aquaculture industries as they reduce the aesthetic quality of oyster products by creating unsightly mud-filled blisters on the inside of the shell. Recently there has been a reported uptick in infested oysters on commercial farms along the west coast of the US, which...
The presence of predators and competitors can offer biotic resistance against the establishment of non-native species, including the European green crab, Carcinus maenas, (EGC) in the estuary of Coos Bay, Oregon. It has been suggested that limb loss, or autotomy of the EGC will increase in areas that include populations...
Landscape plants are highly diverse and nursery producers often grow thousands of taxa to satisfy the varied needs and aesthetic tastes of consumers. Related to this diversity, ornamental plant breeders must be nimble and diverse in their approach. Two seemingly disparate studies were conducted to investigate improving ornamental shrubs –...
Oregon white oak, or Garry oak (Quercus garryana), has been adversely affected by land-use conversion, landscape fragmentation, and anthropogenic fire suppression. Its historical range has contracted significantly to the point where an estimated 1-5% remains intact. Natural regeneration is difficult due to a lack of seed sources and the physiological...
Microplastics are widely distributed in aquatic environments. The term ‘microplastics’ encompasses a wide array of particles with unique polymer constituents, morphologies, and sources, such as automobile tire tread. Tire wear particles (TWP) can end up in waterways near densely populated municipalities, where they can interact with aquatic biota. Studying the...
Floodplain forests play many important roles in the fluvial processes and environments of large alluvial rivers, including acting as geomorphological influences and habitat for native fish during high flows. Many large, gravel-bed river systems have undergone substantial change in recent centuries, resulting in loss of forested area to agriculture, reduction...
The epiphytic lichen Letharia vulpina has been commonly sampled in-situ for nitrogen (N) deposition biomonitoring studies but has never before been transplanted for this purpose. In the high-elevation wilderness areas of southern California Letharia vulpina is generally uncommon, making in-situ sampling difficult. In this study, we compared thallus N accumulation...
Over the last several decades, potato production has increased globally as it has been recognized as an important component to improving food security. However, potato production has been continuously challenged by pests. Current pest management practices rely heavily on chemical pesticides. Unfortunately, the overuse of pesticides can be harmful to...
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Potatoes in the Pacific Northwest (PNW
Low-tech habitat restoration techniques, including Stage 0 treatments, are increasingly applied but often lack robust evaluation of their effects. In 2018, one kilometer of the South Fork McKenzie (SFMK) River, OR was modified to the Stage 0 condition for the benefit of ESA-listed Chinook by raising the incised channel to...
Grasslands in the Pacific Northwest are characterized by seasonally wet, acidic soils that mainly support cool season grasses and a limited number of legume species. A major limitation to efficient animal production in grass-dominant pastures is the decline in the herbage growth rate and nutritional quality of forage from late...
Coastal Douglas-fir (Pseudotsuga menziesii var menziesii) forests are extensive west of the crest of the Cascade Mountains in Oregon and Washington and are renowned for their productivity, biodiversity, and the ecosystem services they provide. Increasing wildfire activity in recent years including the extensive 2020 Labor Day fires, and a warming...
Explosively erupting volcanoes and megathrust earthquakes (Mw 8+ magnitude) occur at subduction zones and adjacent volcanic arcs. Volcanic eruptions are observed occurring close in time to megathrust earthquakes in the historical record from at least the 18th century CE to present in locations globally, including Japan in 1707 CE (Chesley...
Microplastics (<5mm) are a ubiquitous environmental pollutant that have the potential to cause significant harm in many fish species. Therefore, understanding the quantities at which they are being consumed by living organisms is crucial for characterizing risk. There are currently gaps in the microplastic literature regarding microplastic data from finfish...
Humanitarian logistics in the post-disaster phase of an earthquake requires detailed planning about the relief distribution network including assigning available distribution centers (DCs) to the affected areas, distribution of the relief commodities demanded by the affected population, and efficient allocation of the available vehicle fleet for the distribution in a...
The likelihood of a Cascadia Subduction Zone (CSZ) earthquake is estimated between 37 to 42% in the next 50 years, leading to strong shaking, liquefaction, landsliding, and other seismic ground failure resulting in major impacts to critical lifelines such as the western power grid. Electrical power is essential for continued...
There is still scholarly debate on the impacts of large floods on the geomorphic evolution of mountain rivers. Understating the geomorphic effects of large flows in mountain rivers is challenging given the hydraulic complexity of these systems and the inherent unpredictability of large floods. Prior work has demonstrated that extreme...
Riparian forests provide a myriad of ecosystem functions for adjacent streams and rivers, and due to these linkages, changes in riparian forest conditions can have direct implications for stream ecosystems. Resource managers in the coast redwood forests (Sequoia sempervirens) of northern California (USA) are actively thinning second-growth stands to accelerate...
Excavations at the Cooper’s Ferry site (10IH73) revealed a long record of repeated human occupation extending from the late Pleistocene into the early Holocene (~16,000-10,000 cal BP) and have yielded unique insights into the Western Stemmed Tradition (WST), which includes. Several studies have focused on WST pit features encountered at...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Consistent with its charge under Oregon House Bill 3543, the Oregon Climate Change Research Institute (OCCRI) conducts a biennial assessment of the state of climate change science, including biological, physical, and social science, as it relates to Oregon and the likely effects of climate change on Oregon. This fifth Oregon...
In the Columbia Basin, pre-plant soil fumigation is commonly used in potato production for pest control, but fumigation can kill non-target organisms within the soil, result in unintended shifts in the microbial community, and disrupt long-term soil health. Cover crops have been shown to strongly influence the numbers and communities...
Wildfire impacts have intensified in many ecosystems across the western United States due to the combined impact of fire exclusion, climate change, and land management practices. However, on many of these landscapes, fire is a fundamental ecological process that has shaped vegetation structural and compositional diversity, ecosystem function, landscape pattern,...
Forest collaboration emerged in Oregon about 30 years ago as a way to address increasing conflict and distrust amongst stakeholder groups and public land managers. The concept has spread widely, and forest collaboratives are now commonplace on most National Forests in the Pacific Northwest. These groups include a wide range...
The Klamath-Siskiyou Ecoregion of southwest Oregon and northern California is greatly departed from its historic, mixed-severity fire regime. This departure manifests in larger wildfires, greater proportions of high burn severity within wildfire perimeters, and decreased diversity of post-fire vegetation successional stages and trajectories across the landscape compared to historical norms....
Discrete fault systems accommodate both N-S contraction and dextral shear in concert with clockwise rotational deformation of the North American plate above the Cascadia Subduction Zone. In Washington, the Yakima Fold and Thrust Belt (YFTB) accommodates N-S contraction as a series of ENE-WSW trending thrust faults and folds. NW-striking, predominantly...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
The objective of this dissertation is to enhance the monitoring of forest ecosystems through the utilization of remotely sensed data to address the exigencies posed by the Anthropocene. On a global scale, rising temperatures and fluctuating precipitation patterns have strained forests and produced shifts in natural disturbance regimes. Additionally, the...
Carnivores have disproportionate effects in ecological systems but understanding their exact influences on ecosystems is a matter of great complexity and debate. Predators directly impact prey by killing them, and indirectly by modifying their behavior in response to predation risk. Yet how species interact, both among members of a carnivore...
The information in this report is for the purpose of informing cooperators in industry, colleagues at other universities, and others of the results of research in field crops. Reference to products and companies in this publication is for specific information only and does not endorse or recommend that product or...
The aim of this research was to provide forest managers and researchers with a better understanding of individual tree defenses and tree responses to disturbances, within a Collaborative Forest Landscape Restoration Program area. Forest restoration often aims to increase stand-level resistance to uncharacteristic changes, and stand-level resistance begins with tree-level...
This thesis consists of three manuscripts related to the methodology of evaluating charring behavior in cross laminated lumber panel specimens subjected to fire performance tests on cross-laminated lumber panel specimens. The topic of the first manuscript is the measurement of char rates of unprotected CLT layups fabricated with ponderosa pine...
Scour is the main cause of bridge failures in the United States. Bridge failures raise a hazard to the safety of the traveling public as well as the massive economic consequences due to the high cost of constructing a new or a replacement bridge. The Oregon Department of Transportation (ODOT)...
Reinforced concrete (RC) column-footing substructures are widely used to support bridges along critical transportation corridors in Oregon. Those built prior to 1971 were typically designed to resist only gravity loads. Therefore, they are vulnerable to damage or collapse during strong ground shaking. To prevent collapse, seismic retrofits have been developed...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
Septoria canker remains the most important disease of poplars in intensively managed forest plantations. Genetic resistance has long been considered the best way to manage for this disease. Transgenic resistance mediated by RNA silencing against pathogens and pests (HIGS: host-induced gene silencing) has shown promise in other pathosystems but has...
Hyporheic zones are important regions that reside below and along the sides of streams. Within this region, several ecosystem services are provided including stream temperature regulation, habitats for a large variety of species, pollutant removal, and nutrient cycling. Exchange between the hyporheic zone and stream occurs across multiple scales, but...
As climate change contributes to larger and more severe wildfires in California, areas of fire refugia – considered unburned and low-severity burn patches – are playing an increasingly important role in sustaining ecosystem resilience, maintaining biodiversity, and supporting post-disturbance recovery. At the same time, climate refugia – which are areas...
Pollination is an essential ecosystem service that sustains functioning ecosystems and aids in food production. In response to recent, widespread declines of managed and native bee populations, many land managers have shown interest in developing conservation and restoration plans for enhancing native bee habitat. However, there is a lack of...
Anthropogenic land-cover change and climate change are the major drivers of the steep loss of avian biodiversity in past decades. Loss of avian biodiversity is predicted to result in the reduction of ecosystem services and ecological functions. Identifying avian population changes and the drivers of these trajectories is essential for...
Early seral forests regenerating from stand-replacing disturbances provide unique habitat for many species in productive, temperate forest landscapes and contribute to supporting biodiversity. Population declines in some species associated with early seral forests have prompted concerns about the conservation of these habitats, particularly the characteristic structural and compositional complexity associated...
The information in this report is for the purpose of informing cooperators in industry, colleagues at other universities, and others of the results of research in field crops. Reference to products and companies in this publication is for specific information only and does not endorse or recommend that product or...
The information in this report is for the purpose of informing cooperators in industry, colleagues at other universities, and others of the results of research in field crops. Reference to products and companies in this publication is for specific information only and does not endorse or recommend that product or...
The purpose of this paper was to discuss the theory of erotic capital proposed by Catherine Hakim and how this theory affects online advertising done by sex workers. Through analyzing 29 different pages relating to the commercial sex industry, I observed how sexual capital is utilized in marketing strategies and...
Listeria monocytogenes is a foodborne pathogen frequently associated with food processing environments. Its presence is particularly concerning in facilities handling minimally processed and ready-to-eat foods. Recent outbreaks associated with fresh produce, such as packaged salads and mushrooms, highlight the need to better understand and control these pathogens in environments that...
Chlorpyrifos (CPF) is a widely used broad-spectrum organophosphate insecticide. Following exposures, CPF and its more toxic oxon metabolite (CPFO) elicit neurotoxic effects by inhibiting the activity of the acetylcholinesterase enzyme (AChE), resulting in altered fitness and death at high doses. Following exposure, organisms bioactivate CPF to CPFO through the Cytochrome...
Grapevine red blotch virus (GRBV), the causal agent of red blotch disease (RBD) in grapevine, Vitis vinifera L., is an emerging pathogen of significance to the wine grape industry of Oregon, USA. To address knowledge gaps of GRBV epidemiology, spread of GRBV was evaluated in Oregon vineyards over four years....
The body of work aims to contribute to the area of Quantitative analysis in Environmental Sciences, and is focused on the microbiome. The underlying theme for the dissertation is methods and workflow. The unique bioinformatics workflow used for the analysis of genomic data was used to answer distinct and pressing...
Biological invasions threaten native biodiversity, alter ecosystem function, and are a major cause of economic losses across the planet. The most impactful invaders alter disturbance regimes and initiate state shifts to outside the historical range of variability of the ecosystem. Concern for ecological and economic losses has prompted a rapid...
The climate of the Pacific Northwest is in flux, and existing forest ecosystems are stressed and poised to shift in fundamental ways, with or without human intervention. This dissertation probes the nature of forest responses to environmental change through investigations of morphology and genetics of three species of alder co-occurring...
The role that anthropogenic and natural habitats in estuaries play in long-term population trends for Oregon’s nearshore marine fishes is poorly understood, in part due to limited temporal sampling. One important nearshore marine group is northeastern Pacific rockfishes (Sebastes spp.), which are highly diverse, with around 96 documented species, and...
In recent years, unoccupied aircraft systems (UAS) have become increasingly affordable and straightforward to incorporate in monitoring applications of forested ecosystems. This shift has facilitated interest in using these tools to monitor aspects of forest ecosystems including vegetation health, forest structure and composition, and potential habitat provided by these systems....
Currently, little work has been performed studying energy consumption in hop kilning. This thesis explores drying with an alternative drying schedule that extends the initially elevated drying temperature currently used by growers and examines its impact on drying time and energy use. Extending the time of the initially elevated drying...
The word orogenesis is derived from the Greek words oros meaning mountains and genesis meaning creation and refers to the study of the complex processes involved in the growth and evolution of mountain ranges (orogens). Orogens develop where crustal deformation builds topography and forms landscapes. This dissertation explores the role...
The spread of nonnative species across the globe has contributed to biodiversity loss and changes in ecosystem structure and function. Monitoring the introduction, naturalization, and spread of introduced species is critical in abating negative impacts wrought by species invasions. However, providing basic information concerning the presence or spread of many...
A growing number of scholars and policymakers are advocating for the integrated management of water, energy, and food production. The integrated water-energy-food (WEF) nexus approach suggests that systems able to capture and effectively deal with the interdependencies of such coupled systems are more likely to yield long-term sustainable outcomes. In...
Consistent with its charge under Oregon House Bill 3543, the Oregon Climate Change Research Institute (OCCRI) conducts a biennial assessment of the state of climate change science, including biological, physical, and social science, as it relates to Oregon and the likely effects of climate change on Oregon. This sixth Oregon...
Iterative algorithms are simple yet efficient in solving large-scale optimization problems in practice. With a surge in the amount of data in past decades, these methods have become increasingly important in many application areas including matrix/tensor recovery, deep learning, data mining, and reinforcement learning. To optimize or improve iterative algorithms,...
Developed coastlines provide a variety of recreation opportunities to coastal residents and visitors but are also the first line of defense for oceanfront development against chronic hazards like erosion and sea level rise. In the Pacific Northwest of the United States, oceanfront homes also face an additional severe but very...