This dataset contains DNA sequence data of Oncorhynchus species, isolated from environmental DNA (eDNA) from Pacific Northwest streams via microfluidic eDNA metabarcoding and high-throughput (Ilummina) sequencing (samples collected from 2017-09-22 to 2017-10-10). It is accompanied by scripts and commands for data analyses including: sequence denoising, calculation of entropy values by...
Headwater streams in the Oregon Coastal Range are subject to drastic fluctuations in flow and temperature because of the changing seasonality of a Mediterranean climate. In response to these changes, stream fishes exhibit a variety of movement patterns. Coastal Cutthroat Trout (Oncorhynchus clarkii clarkii) have evolved an assortment of life...
Racial, ethnic and gender diversity have been long term topics of discussion in natural resources. Yet to date, there has not been a comprehensive review of the existing literature within the discourse of demographic diversity. Therefore, I conducted a systematic review of demographic diversity in the disciplines of forestry, fisheries,...
Dams, culverts, and water intake structures can impact the movement of aquatic and semi-aquatic species within streams and rivers. Datagaps exist regarding the impact of water intake structures on larval coastal giant salamanders (Dicamptodon tenebrosus) as these obstructions may produce a barrier to up and downstream movement. The Rock Creek...
Riparian forests provide a myriad of ecosystem functions for adjacent streams and rivers, and due to these linkages, changes in riparian forest conditions can have direct implications for stream ecosystems. Resource managers in the coast redwood forests (Sequoia sempervirens) of northern California (USA) are actively thinning second-growth stands to accelerate...
The introduction of non-native species can negatively impact native species through reduced genetic fitness resulting from hybridization. The lack of spatiotemporal data of hybrids occurrences makes assessing hybridization risk difficult. Here, I developed a spatially-explicit GIS Hybridization Risk Model (HRM) between native ESA-listed Bull Trout and introduced Brook Trout by...
Food webs are fundamental in ecology, as they offer a way to better understand the interrelatedness, connectivity, and complexity within a given ecosystem. The use of network analysis to model food webs can provide insights about the importance of physical templates on the organization of biological systems in streams using...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Following European-American colonization of North America and associated landscape changes, barred owls (Strix varia) underwent a dramatic expansion of their historical range. The barred owl expanded across the previously tree-less Great Plains that had limited their distribution, and into the forests along the west coast. In these western forests they...