The pulse-coupled oscillator model is widely used to simulate the dynamics of neural systems. For networks with particular internal (Mirollo-Strogatz) dynamics, I will define three broad patterns of collective behaviors found in literature in terms of inter-spike interval (ISI) statistics. These patterns are i) temporally-regular, characterized by all oscillators in...
Forest harvest practices can impact nutrient concentrations and stream temperatures, altering aquatic ecosystems. To better inform future sustainable forest resource management practices, quantifying the impact of current practices on water quality, particularly in headwater streams is important. In this study, I quantified monthly nitrate-nitrite (N) and orthophosphate (P) concentrations, 7-day...
In recent decades, the occurrence of large, high severity wildfires has increased substantially in many parts of the world, including the western United States. These fires have the potential to impact water quality, aquatic ecosystems, and downstream communities for many decades. As such, it is increasingly important to understand the...
Current natural product (NP) research is limited by its reliance on bioassay-guided fractionation to identify bioactive compounds in mixtures. Computational approaches may improve NP research by correlating mass spectra (MS) and nuclear magnetic resonance spectra (NMR) of bioactive mixtures to their bioactivity patterns. In this study, I use artificial neural...
The extent and severity of wildfires in forested regions are increasing throughout many regions on the planet, including western North America. High-severity wildfires directly affect soils and vegetation by altering soil hydraulic properties, reducing soil organic matter, exporting carbon and nitrogen, and killing trees and understory vegetation. These impacts can...
The gut microbiome has been previously implemented in a number of diseases. Of note is its substantial role in metabolic syndrome, which encapsulates a group of conditions that increase the risk of cardiovascular disease, type 2 diabetes, and stroke. Understanding the causal relationships between the gut microbiome and host processes...
In this dissertation, a novel method for analyzing computed transition states (TS) for organic reactions is disclosed. It introduces the use of localization-delocalization matrices as parameters in a linear free energy relationship to determine the transition state interactions responsible for differences in energy between the major and minor TS in...
Headwater streams represent the majority of the drainage area of a river network and provide many critical functions supporting aquatic and terrestrial ecosystem health. The riparian zones that surround these streams are transitional areas between terrestrial and stream ecosystems, which provide key habitat for aquatic and terrestrial organisms, especially during...
Mountainous headwater streams make up ~80 % of stream length globally and are strongly connected with catchment hillslopes and riparian areas, which can influence water quantity, quality, and availability for downstream uses. Accordingly, effective management of headwater streams and riparian zones to maintain desired ecosystem services downstream is critical, particularly...