Time‐dependent, three‐dimensional, upwelling circulation on the continental shelf off the Oregon coast is studied using a primitive equation numerical model. A limited area domain with a high‐resolution curvilinear grid is utilized. The response of the coastal ocean to forcing by observed wind stress and heat flux during the summer 2001...
High‐resolution three‐dimensional (3‐D) seismic reflection data acquired on the R/V Thomas G. Thompson in 2000 reveal a pair of bottom simulating reflections (BSRs) across a broad region of southern Hydrate Ridge, offshore Oregon. The primary BSR (BSRp) is a regionally extensive reflection that lies 120–150 m below seafloor and exhibits...
One important role of anthropogenic aerosol particles is their influence on climate by acting as cloud condensation nuclei. However, these particles are diverse in composition and mixing state, and our knowledge of which particle types act as cloud condensation nuclei is incomplete. Here we present direct measurements of individual organic...
The Oregon State University Mars MM5 was used in a comprehensive high-resolution study of northern polar summertime circulations. Three simulations (Ls = 120, Ls = 135, and Ls = 150) characterize the changing circulation. The atmosphere is dry, and model dynamics are hydrostatic. A modified TES thermal inertia map provides...
Most climate models predict a weakening of the North Atlantic thermohaline circulation for the 21st century when forced by increasing levels of greenhouse gas concentrations. The model spread, however, is rather large, even when the forcing scenario is identical, indicating a large uncertainty in the response to forcing. In order...
A remote sensing method to measure directional oceanic surface waves by three laser altimeters on the NOAA LongEZ aircraft is investigated. To examine feasibility and sensitivity of the wavelet analysis method to various waves, aircraft motions, and aircraft flight directions relative to wave propagation directions, idealized surface waves are simulated...
Energy flux is a fundamental quantity for understanding internal wave generation, propagation, and dissipation. In this paper, the estimation of internal wave energy fluxes <u′p′> from ocean observations that may be sparse in either time or depth are considered. Sampling must be sufficient in depth to allow for the estimation...
Direct numerical simulations are used to compare turbulent diffusivities of heat and salt during the growth and collapse of Kelvin–Helmholtz billows. The ratio of diffusivities is obtained as a function of buoyancy Reynolds number Re[subscript]b and of the density ratio R[subscript]ρ (the ratio of the contributions of heat and salt...
This article presents a semianalytic method to investigate the properties of energy transmission across bottom topography by barotropic Rossby waves. The method is first used to revisit the analytical estimates derived from wave-matching techniques and Wentzel–Kramers–Brillouin (WKB) approximations. The comparison between the semianalytic method and WKB indicates that the results...
An analytical model of subtropical mode water is presented, based on ventilated thermocline theory and on numerical solutions of a planetary geostrophic basin model. In ventilated thermocline theory, the western pool is a region bounded on the east by subsurface streamlines that outcrop at the western edge of the interior,...
The sublimation of snow and evaporation of melted snow is contrasted between brush, grass and bare ground sites using eddy-correlation data. Averaged over the entire winter season, the evaporation/sublimation is about 20% greater over the brush site than the bare ground site, apparently due to greater supply of snow. Blowing...
Underground temperatures contain a record of past changes in the energy balance at the Earth's surface, such that borehole temperature data can be used to reconstruct long‐term trends of ground surface temperature (GST) changes. In addition to surface air temperature, however, GST is the response of the ground to other...
We discuss connections between inner‐shelf and mid‐shelf circulation near Point Conception, California, as well as the wind forcing of inner‐shelf circulation. Point Conception marks the southern edge of a major upwelling zone that extends from Oregon to central California. The coastline makes a sharp eastward turn at Point Conception, and...
We measured iron concentrations off the Oregon coast in spring (May–June) and summer (August) of 2001 as part of the Coastal Ocean Advances in Shelf Transport (COAST) program. Dissolvable and total dissolvable iron levels in surface waters were generally higher in spring (mean of 2.1 and 33.9 nmol L¯¹, respectively)...
We examined variability in the natural fluorescence yield of a neritic diatom, Thalassiosira weissflogii, in continuous cultures. In this species, kinetics in natural fluorescence yield over time scales less than a photoperiod were characterized by sharp decreases, occurring at irradiance intensities that presumably coincide with the onset of nonphotochemical fluorescence...
The objective of this study was to compare the shear strength of structural composite lumber (SCL) based on shear block to that of shear strength based on torsion test. Shear blocks in two diflcrent orientations fom laminated veneer lumber, parallel strand lumber, and laminated strand lumber (LSL) were tested and...
The ability to ascertain gender and age of juvenile grouse is essential for determining gender-specific population age structure and studying timing of reproductive events, respectively. We examined outer rectrix feathers from juvenile Lesser Prairie-Chickens (Tympanuchus pallidicinctus) captured at 30–40 and 50–60 days post-hatching. Blood samples were collected from most chicks...
We used mark-recapture methods to estimate age-specific apparent survival rates for male Lesser Prairie-Chickens (Tympanuchus pallidicinctus), a gamebird of conservation concern. A total of 311 male prairie-chickens (135 yearlings, 176 adults) were captured and banded during a 5-year study in southwest Kansas. Time-since-marking models were used to estimate apparent survival...
Invertebrates are an important food source for grouse chicks, especially within the first 2 weeks of life. Invertebrate abundance is highly patchy and dependent upon herbaceous cover and vegetation structure. We examined the relationship between invertebrate biomass (from sweepnet samples) and habitat structure at lesser prairie-chicken (Tympanuchus pallidicinctus) brood-use and...
The Plant Ontology Consortium (POC) (www.plantontology.org) is a collaborative
effort among several plant databases and experts in plant systematics, botany
and genomics. A primary goal of the POC is to develop simple yet robust
and extensible controlled vocabularies that accurately reflect the biology of plant
structures and developmental stages. These...
MOTIVATION: The automatic identification of over-represented motifs present in a collection of sequences continues to be a challenging problem in computational biology. Many existing approaches to motif identification do not always find the relevant biological motifs, or find only a subset of the occurrences of a motif. In this paper,...
The ratio of live crown length to tree height (crown ratio; CR) is often used as an important predictor variable for tree level growth equations, particularly for multi-species and multi-layered stands. Also, CR indicates tree vigour and can be an important habitat variable. Measurement of CR for each tree can...
Hop (Humulus lupulus L. var. lupulus) is grown worldwide for the production of the dried female inflorescence (strobulus), or cones, used principally for the bittering and flavoring of beer. Information is scant on the inheritance of traits of economic importance in hop, and present knowledge is based on historical data...
Hop (Humulus lupulus L.) is a perennial, dioecious species in which the female inflorescence (cones) are harvested and used in the beer-brewing process to impart bittering and/or flavoring to beer. Hop breeders have typically utilized clonal selection and hybridization to develop new cultivars. The use of genetically diverse parents for...
We perform two-dimensional linear elastic finite element analysis to investigate the mechanical stability of ultrathin Ge/Si film grown on or bonded to SiO₂, using imperfect interface elements between Si and SiO₂ to model Si/SiO₂ interfacial slippage. We demonstrate that the overall composite film is stable when only the tangential slippage...
The physical demands of rapid and economical running differ from the demands of fighting in ways that may prevent the simultaneous evolution of optimal performance in these two behaviors. Here, we test an hypothesis of functional trade-off in limb bones by measuring mechanical properties of limb bones in two breeds...
Recent comparative studies across sex-changing animals have found that the relative size and age at sex change are strikingly invariant. In particular, 91%–97% of the variation in size at sex change across species can be explained by the simple rule that individuals change sex when they reach 72% of their...
Quality concerns drive many water studies and practices, but obtaining samples from water bodies over time and space for quality determination is often difficult and expensive. We present a low-cost approach that allows integration of water samples over timescales of days to months to allow more widely distributed acquisition of...
Solutions to the Boussinesq equation describing drainage into a fully penetrating channel have been used for aquifer characterization. Two analytical solutions exist for early- and late-time drainage from a saturated, homogeneous, and horizontal aquifer following instantaneous drawdown. The solutions for discharge Q can be expressed as dQ/dt = −aQ [superscript...
Form skipping has been used to help injured athletes progress to running.
Because little research has been done on form-skipping mechanics, its justifi cation
as a progression to running exercises is unclear. Objective: To compare groundreaction
forces (GRF) during form skipping and running in healthy subjects at
clinically relevant speeds,...
A spectrum-matching and look-up-table (LUT) methodology has been developed and evaluated to extract environmental information from remotely sensed hyperspectral imagery. The LUT methodology works as follows. First, a database of remote-sensing reflectance (R[subscript]rs) spectra corresponding to various water depths, bottom reflectance spectra, and water-column inherent optical properties (IOPs) is constructed...
In forest landscape level analyses, forest information is commonly represented by separate polygons, defined by differences in species composition, stand structure, crown closure, and productivity. The simplest approach to projecting yield of stands over the land base is to create an aggregated yield table, weighted by area of each stand...
The propagation of downwelling irradiance at wavelength l from surface to a depth (z) in the ocean is governed by the diffuse attenuation coefficient, K𝒹(λ). There are two standard methods for the derivation of K𝒹(λ) in remote sensing, which both are based on empirical relationships involving the blue-to-green ratio of...
A counterflow virtual impactor was used to collect residual particles larger than about 0.1 μm diameter from anvil cirrus clouds generated over Florida in the southern United States. A wide variety of particle types were found. About one-third of the nuclei were salts, with varying amounts of crustal material, industrial...
During boreal summer and fall, there is a strong southerly boundary layer flow across the equator into the east Pacific intertropical convergence zone (ITCZ). The modulation of this flow on synoptic to seasonal time scales is studied using an index of meridional pressure difference between the equator and the ITCZ...
The atmospheric boundary layer (ABL) along 95°W in the eastern equatorial Pacific during boreal autumn is described using data from the East Pacific Investigation of Climate (EPIC) 2001, with an emphasis on the evolution of the thermodynamic ABL properties from the cold tongue to the cold-advection region north of the...
In western North America, snow provides crucial storage of winter precipitation, effectively transferring water from the relatively wet winter season to the typically dry summers. Manual and telemetered measurements of spring snow-pack, corroborated by a physically based hydrologic model, are examined here for climate-driven fluctuations and trends during the period...
Obtaining global sea surface temperature (SST) fields for the ocean boundary condition in numerical weather prediction (NWP) models and for climate research has long been problematic. Historically, such fields have been constructed by a blending of in situ observations from ships and buoys and satellite infrared observations from the Advanced...
The dependence of the reflectance at the surface on the vertical structure of optical parameters is derived from first principles. It is shown that the depth dependence is a function of the derivative of the round trip attenuation of the downwelling and backscattered light. Previously the depth dependence was usually...
Two sources of systematic errors are considered for estimating air temperature. The first source is ambiguity of the definition of the standardized measurement height over vegetated surfaces of varying heights. Without such a standardization, evaluation of the horizontal air temperature gradient is contaminated by the vertical variation of air temperature....
Errors in eddy correlation measurements from moving platforms (aircraft, ships, buoys, blimps, tethered balloons, and kites) include contamination of the measured fluctuations by superficial fluctuations associated with vertical movement of the platform in the presence of mean vertical gradients. Such errors occur even with perfect removal of the motion of...
Observations of sunlight reflected from regions of sun glint are used to check the relative calibration of spectral radiances obtained with imaging radiometers. Reflectances at different wavelengths for sun-glint regions are linearly related. Provided that the atmosphere is reasonably transparent at the wavelengths, the aerosol burden is reasonably light, 0.64-μm...
The application of a generalized inverse approach for assimilating vessel-mounted acoustic Doppler current profiler (VM-ADCP) data into numerical solutions of barotropic tides is described. The derived estimates of tidal currents can be used to detide the VM-ADCP data and expose underlying mean circulation. The methodology is illustrated with data assimilation...
Retrievals of cloud properties from satellite imagery often invoke the assumption that the fields of view are overcast when cloud-contaminated, even though a significant fraction are only partially cloud-covered. The overcast assumption leads to biases in the retrieved cloud properties: cloud amounts and droplet effective radii are typically overestimated, while...
An atmospheric stationary wave teleconnection mechanism is proposed to explain how ENSO may affect the Tibetan Plateau snow depth and thereby the south Asian monsoons. Using statistical analysis, the short available record of satellite estimates of snow depth, and ray tracing, it is shown that wintertime ENSO conditions in the...
The marine atmospheric boundary layer (MABL) response to sea surface temperature (SST) perturbations with wavelengths shorter than 30° longitude by 10° latitude along the Agulhas Return Current (ARC) is described from the first year of SST and cloud liquid water (CLW) measurements from the Advanced Microwave Scanning Radiometer (AMSR) on...
Intraseasonal precipitation variability over the northeast Pacific warm pool during June–October in the National Center for Atmospheric Research Community Atmosphere Model 2.0.1 with a relaxed Arakawa–Schubert convection parameterization is found to be strongly sensitive to wind-induced variations in surface latent heat flux. A control simulation with interactive surface fluxes produces...
The impact of SST specification on low-level winds in the operational ECMWF numerical weather prediction model is investigated in the eastern tropical Pacific from comparisons of ECMWF wind stress fields with QuikSCAT satellite scatterometer observations of wind stress during the August–December cold seasons of 2000 and 2001. These two time...
Current stream tracer techniques do not allow separation of in-channel dead zone (e.g., eddies) and out-of-channel (hyporheic) transient storage, yet this separation is important to understanding stream biogeochemical processes. We characterize in-channel transient storage with a rhodamine WT solute tracer experiment in a 304 m cascade-pool-type bedrock reach with no...