We report here on recent developments and advances in pore-scale x-ray tomographic imaging of subsurface porous media. Our particular focus is on immiscible multi-phase fluid flow, i.e., the displacement of one immiscible fluid by another inside a porous material, which is of central importance to many natural and engineered processes....
Like most ecological communities, aspen (Populus tremuloides) forests are influenced by a synergy of bottom-up (resources-driven) and top-down (predator-driven) processes. Since the 1920s, ecologists have observed the decline of many aspen communities throughout the Intermountain West. The extent and possible drivers of this decline are topics of much recent scientific...
Weed management practices were evaluated in a new field of trailing blackberry (Rubus L. subgenus Rubus Watson) established in western Oregon. The field was planted in May 2010 and certified organic in May 2012. Treatments included two cultivars, Marion and Black Diamond, grown in 1) non-weeded plots, where weeds were...
A simple, fast liquid-liquid extraction method was developed for studying hexahydro-1,3,5-trinitro-1,3,5 triazine (RDX) biodegradation using small sample volumes. The method was tested
in vitro with anaerobic incubations of RDX with whole rumen fluid (WRF) and a commercial S.
acetigenes strain in methanogenic media for RDX. Additionally, validation experiments were
conducted...
Because animal studies are labor intensive, predictive equations are used extensively for calculating metabolizable energy (ME) concentrations of dog and cat pet foods. The objective of this retrospective review of digestibility studies, which were conducted over a 7-year period and based upon Association of American Feed Control Officials (AAFCO) feeding...
Ammonia (NH₃)-oxidizing bacteria (AOB) and thaumarchaea (AOA) co-occupy most soils, yet no short-term growth-independent method exists to determine their relative contributions to nitrification in situ. Microbial monooxygenases differ in their vulnerability to inactivation by aliphatic n-alkynes, and we found that NH₃ oxidation by the marine thaumarchaeon Nitrosopumilus maritimus was unaffected...
Disturbance events strongly affect the composition, structure, and function of forest ecosystems; however, existing US land management inventories were not designed to monitor disturbance. To begin addressing this gap, the North American Forest Dynamics (NAFD) project has examined a geographic sample of 50 Landsat satellite image time series to assess...
Gene regulatory networks are commonly used for modeling biological processes and revealing underlying molecular mechanisms. The reconstruction of gene regulatory networks from observational data is a challenging task, especially considering the large number of players (e.g. genes) involved and the small number of biological replicates available for analysis. Herein, we...
A large-eddy simulation study was performed to characterize turbulence in sparse, row-oriented canopies. This was accomplished by simulating a set of heterogeneous row-oriented canopies with varying row vegetation density and spacing. To determine the effects of heterogeneity, results were compared to horizontally homogeneous canopies with an equivalent ‘effective’ leaf area...
DNA has a well-defined structural transition-the denaturation of its double-stranded form into two single strands-that strongly affects its thermal transport properties. We show that, according to a widely implemented model for DNA denaturation, one can engineer DNA 'heattronic' devices that have a rapidly increasing thermal conductance over a narrow temperature...