Correction: 7 Mar 2016: The PLOS ONE Staff (2016) Correction: Successful Recovery of Nuclear Protein-Coding Genes from Small Insects in Museums Using Illumina Sequencing. PLOS ONE 11(3): e0151124. https://doi.org/10.1371/journal.pone.0151124
Floods are the most frequent natural disaster, causing more loss of life and property than any other in the USA. Floods also strongly influence the structure and function of watersheds, stream channels, and aquatic ecosystems. The Pacific Northwest is particularly vulnerable to climatically driven changes in flood frequency and magnitude,...
This dataset contains trace-element data, descriptive information, and photographs for 328 field clays sampled in the Valley of Oaxaca, Mexico; mineralogical data are presented for a subset of the samples. The clay samples were generated as part of a valley-wide sampling strategy designed to capture spatial variation in clay composition...
Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native...
Ampelisca eschrichtii are among the most important prey of the Western North Pacific gray whales, Eschrichtius robustus. The largest and densest known populations of this amphipod occur in the gray whale’s Offshore feeding area on the Northeastern Sakhalin Island Shelf. The remote location, ice cover and stormy weather at the...
Background: Epidemiological studies of disease exposure risk are frequently based on observational, cross-sectional data, and use statistical approaches as crucial tools for formalising causal processes and making predictions of exposure risks. However, an acknowledged limitation of traditional models is that the inferred relationships are correlational, cannot easily distinguish direct from...
The kinetics of laser-induced, liquid-mediated crystallization of amorphousGe thin films were studied using multi-frame dynamic transmission electron microscopy (DTEM), a nanosecond-scale photo-emission transmission electron microscopy technique. In these experiments, high temperature gradients are established in thin amorphousGe films with a 12-ns laser pulse with a Gaussian spatial profile. The hottest...
To survive winter, many perennial plants become endodormant, a state of suspended growth maintained even in favorable growing environments. To understand vegetative bud endodormancy, we collected paradormant, endodormant, and ecodormant axillary buds from Populus trees growing under natural conditions. Of 44,441 Populus gene models analyzed using NimbleGen microarrays, we found...
We report zero kinetic energy (ZEKE) photoelectron spectroscopy of benzo[h]quinoline (BhQ) via resonantly enhanced multiphoton ionization (REMPI) through the first electronically excited state S₁. From the simulated REMPI spectra with and without Herzberg–Teller coupling, we conclude that vibronic coupling plays a minor but observable role in the electronic excitation to...
The trophic habits, size and condition of yearling Chinook salmon (Oncorhynchus tshawytscha) caught early in their marine residence were examined during 19 survey years (1981–1985; 1998–2011). Juvenile salmon consumed distinct highly piscivorous diets in cold and warm ocean regimes with major differences between ocean regimes driven by changes in consumption...
A previously developed physiologically based pharmacokinetic (PBPK) model for bisphenol A (BPA) in adult rhesus monkeys was modified to characterize the pharmacokinetics of BPA and its phase II conjugates in adult humans following oral ingestion. Coupled with in vitro studies on BPA metabolism in the liver and the small intestine,...
We measured fracture resistance curves (or R curves) for laminated veneer lumber (LVL) made with Douglas fir veneer and polyvinyl acetate resin and for solid wood Douglas fir. The LVL and solid wood R curves were the same for initiation of fracture, but the LVL toughness rose much higher than...
We investigate a method for numerically generating discrete scattering cross sections for use in charged particle transport simulations. We describe the cross section generation procedure and compare it to existing methods used to obtain discrete cross sections. The numerical approach presented here is generalized to allow greater flexibility in choosing...
Seasonality and drought in Amazon rainforests have been controversially discussed in the literature, partially due to a limited ability of current remote sensing techniques to detect its impacts on tropical vegetation. We use a multi-angle remote sensing approach to determine changes in vegetation structure from differences in directional scattering (anisotropy)...
Accurate and reliable estimates of gross primary productivity (GPP) are required for monitoring the global carbon cycle at different spatial and temporal scales. Because GPP displays high spatial and temporal variation, remote sensing plays a major role in producing gridded estimates of GPP across spatiotemporal scales. In this context, understanding...
The farnesoid X receptor (FXR) regulates bile acid, lipid and glucose metabolism. Here we show that treatment of mice with glycine-b-muricholic acid (Gly-MCA) inhibits FXR signalling exclusively in intestine, and improves metabolic parameters in mouse models of obesity. Gly-MCA is a selective high-affinity FXR inhibitor that can be administered orally...
Coal-bed natural gas production in the U.S. in 2012 was 1655 billion cubic feet (bcf). A by-product of this production is co-produced water, which is categorized as a waste product by the Environmental Protection Agency. The effects of varying concentrations of coal-bed methane (produced) water were studied in the greenhouse...
Programmable conductive patterns created by photoexcitation of semiconductor substrates using digital light processing (DLP) provides a versatile approach for spatial and temporal modulation of THz waves. The reconfigurable nature of the technology has great potential in implementing several promising THz applications, such as THz beam steering, THz imaging or THz...
Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on phenotype and environment are highly heterogeneous and thus difficult to find and integrate. One approach that is likely to improve the status quo involves the use of ontologies to standardize...
Background:
Phylogeographic studies of aquatic insects provide valuable insights into mechanisms that shape the genetic structure of communities, yet studies that include broad geographic areas are uncommon for this group. We conducted a broad scale phylogeographic analysis of the least salmonfly Pteronarcella badia (Plecoptera) across western North America. We tested...
A steam distillation extraction kinetics experiment was conducted to estimate essential oil yield, composition, antimalarial, and antioxidant capacity of cumin (Cuminum cyminum L.) seed (fruits). Furthermore, regression models were developed to predict essential oil yield and composition for a given duration of the steam distillation time (DT). Ten DT durations...
Kramers’ theory frames chemical reaction rates in solution as reactants overcoming a barrier in the presence of friction and noise. For weak coupling to the solution, the reaction rate is limited by the rate at which the solution can restore equilibrium after a subset of reactants have surmounted the barrier...
29 Dec 2015: Rosales SM, Vega Thurber R (2015) Correction: Brain Meta-Transcriptomics from Harbor Seals to Infer the Role of the Microbiome and Virome in a Stranding Event. PLOS ONE 10(12): e0146208. https://doi.org/10.1371/journal.pone.0146208
Understanding the precise role of the immune system in cancer has been hindered by the complexity of the immune response and challenges in measuring immune cell types in health and disease in the context of large epidemiologic studies. In this review, we present the rationale to study immunity in cancer...
Here we use SKS shear wave splitting observations from ocean-bottom seismometer data to infer patterns of mantle deformation beneath the Juan de Fuca plate and its adjoining boundaries. Our results indicate that the asthenosphere beneath the Juan de Fuca plate responds largely to absolute plate motion with an anisotropic layer...
The consumption of animal-sourced food products by humans is one of the most powerful negative forces affecting the conservation of terrestrial ecosystems and biological diversity. Livestock production is the single largest driver of habitat loss, and both livestock and feedstock production are increasing in developing tropical countries where the majority...
Turbulent bottom Ekman layers are among the most important energy conversion sites in the ocean. Their energetics are notoriously complex, in particular near sloping topography, where the feedback between cross-slope Ekman transports, buoyancy forcing, and mixing affects the energy budget in ways that are not well understood. Here, the authors...
In a simulator-defined MDP, the Markovian dynamics and rewards are provided in the form of a simulator from which samples can be drawn. This paper studies MDP planning algorithms that attempt to minimize the number of simulator calls before terminating and outputting a policy that is approximately optimal with high...
In Section 1 we will discuss multi-nucleon transfer reactions with light heavy ions, which can be thought of as competing with complete fusion at higher impact parameters. Quasi-elastic and multi-nucleon transfer reactions with the heaviest projectiles will be discussed in Section 2. In Section 3 we will cover recent developments...
Raptors that inhabit sagebrush steppe and grassland ecosystems in the western United States may be threatened by continued loss and modification of their habitat due to energy development, conversion to agriculture, and human encroachment. Actions to protect these species are hampered by a lack of reliable data on such basic...
OBJECTIVES: The current study examined disparities in smoking trends across African Americans and non-Hispanic whites in California.
METHODS: Data from the 1996 to 2008 California Tobacco Survey were analyzed to examine trends in smoking behaviors and cessation across African Americans and non-Hispanic whites.
RESULTS:
A decrease in overall ever and...
Analysis of stochastic models of networks is quite important in light of the huge influx of network data in social, information and bio sciences, but a proper statistical analysis of features of different stochastic models of networks is still underway.We propose bootstrap subsampling methods for finding empirical distribution of count...
The relative influences of trans-Pacific and regional atmospheric transport on measured concentrations of polycyclic aromatic hydrocarbons (PAHs), PAH derivatives [Nitro- (NPAH) and Oxy-(OPAH)], organic carbon (OC), and Particulate Matter (PM) less than 2.5 μm in diameter (PM₂.₅) were investigated in the Pacific Northwest, USA in 2010-2011. Ambient high volume PM₂.₅...
Mangroves provide a wide range of ecosystem services, including nutrient cycling, soil formation, wood production, fish spawning grounds, ecotourism and carbon (C) storage¹. High rates of tree and plant growth, coupled with anaerobic, water-logged soils that slow decomposition, result in large long-term C storage. Given their global significance as large...
The illicit use of prescription stimulants (IUPS) is a substance use behavior that remains prevalent on college campuses. As theory can guide research and practice, we provide a systematic review of the college-based IUPS epidemiological literature guided by one ecological framework, the Theory of Triadic Influence (TTI). We aim to...
Understanding plant photosynthesis, or Gross Primary Production (GPP), is a crucial aspect of quantifying the terrestrial carbon cycle. Remote sensing approaches, in particular multi-angular spectroscopy, have proven successful for studying relationships between canopy-reflectance and plant-physiology processes, thus providing a mechanism to scale up. However, many different instrumentation designs exist and...
OBJECTIVES:
A key challenge for achieving universal water access in Sub-Saharan Africa is poor sustainability of water schemes. Previous studies have posited factors that may lead to failed schemes; however, empirical data are lacking.
METHODS:
We conducted direct observations of water sources and interviewed water committee members about governance in...
Calculating a sample unit × trait matrix provides a flexible first step in analyzing the relationships between species traits and explanatory variables. This matrix is obtained by multiplying a sample unit × species matrix by a species × trait matrix, but the content of the resulting matrix depends on whether...
For the first time we report the results of a survey to determine the presence, seasonal phenology and biological control status of indigenous parasitoid populations utilizing Drosophila suzukii (Matsumura) and Drosophila melanogaster Meigen (Diptera Drosophilidae) as hosts in Trento Province, Northern Italy, and the Willamette Valley, Oregon, USA. Larval and...
Back-calculation of length-at-age from otoliths and spines is a common technique employed in fisheries biology, but few studies have compared the precision of data collected with this method for catfish populations. We compared precision of back-calculated lengths-at-age for an introduced Ictalurus furcatus (Blue Catfish) population among 3 commonly used cross-sectioning...
An Expert Panel convened by the National Lipid Association previously developed a consensus set of recommendations for the patient-centered management of dyslipidemia in clinical medicine (part 1). These were guided by the principle that reducing elevated levels of atherogenic cholesterol (non–high-density lipoprotein cholesterol and low-density lipoprotein cholesterol) reduces the risk...
During the Deepwater Horizon oil well blowout in the Gulf of Mexico, the application of 7 million liters of chemical dispersants aimed to stimulate microbial crude oil degradation by increasing the bioavailability of oil compounds. However, the effects of dispersants on oil biodegradation rates are debated. In laboratory experiments, we...
Predators are often classed as prey specialists if they eat a narrow range of prey types, or as generalists if they hunt multiple prey types. Yet, individual predators often exhibit sex, size, age or personality-related differences in their diets that may alter the impacts of predation on different prey groups....
Hatchery-reared steelhead (Oncorhynchus mykiss) often have lower fitness than natural-origin fish when spawning in the wild. Fitness loss in hatcheries is partly due to genetic adaptation to captivity (domestication), but the underlying selection pressures driving adaptation remain unknown. Circumstantial evidence suggests that adaptation to hatcheries is accelerated when fish are...
The peptidyl nucleoside blasticidin S (BS) isolated from Streptomyces griseochromogenes was the first non-mercurial fungicide used on a large scale to prevent rice blast. In the biosynthesis of BS, leucylblasticidin S (LBS) was suggested as the penultimate metabolite with 20-fold less inhibitory activity than the final product BS. Incomplete conversion...
To meet societal needs, modern estuarine science needs to be interdisciplinary and collaborative, combine discovery with hypotheses testing, and be responsive to issues facing both regional and global stakeholders. Such an approach is best conducted with the benefit of data-rich environments, where information from sensors and models is openly accessible...
Wood is a key structural element in aquatic ecosystems. Wood provides habitat complexity, alters geomorphology, retains organic and inorganic material, promotes hyporheic flow, and acts as substrate for biofilms and invertebrates. Fire is an important disturbance promoting wood recruitment into inland waters, but most studies have focused on streams in...
The influence of varying horizontal and vertical stratification in the upper layer ( inline image m) associated with riverine waters and seasonal atmospheric fluxes on coastal near-inertial currents is investigated with remotely sensed and in situ observations of surface and subsurface currents and realistic numerical model outputs off the coast...
Social information is used widely in breeding habitat selection and provides an efficient means for individuals to select habitat, but the population-level consequences of this process are not well explored. At low population densities, efficiencies may be reduced because there are insufficient information providers to cue high-quality habitat. This constitutes...