Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low‐copy nuclear (LCN) loci for phylogenetics in nonmodel organisms, we created an automated and interactive script to...
We compiled existing data and information to characterize the condition and trends in high priority natural resources in Ebey’s Landing National Historical Reserve (EBLA, or "the Reserve"). We identified 29 indicators to evaluate seven major resource concerns. For each indicator we attempted to define reference conditions to which we could...
Declines in Greater Sage-Grouse (Centrocercus urophasianus, hereafter sage-grouse) populations could be attributed to low chick survival, which may be influenced by the availability of food and cover at sites used by females rearing broods. Habitat attributes important to broods may vary regionally; thus, it is necessary to understand factors affecting...
What affects the oceans affects terra firma. Ocean Solutions, Earth Solutions gathers the insights of more than 50 ocean and coastal science researchers exploring ocean components and their relationships, patterns, and trends over time and space. The book's 16 chapters feature geographic information system (GIS) best practices and include additional...
Background
The purpose of this study was to examine the association between daily movement patterns and dual energy X-ray absorptiometry-determined body fat percent (DXA-BF%) among children and adolescents while applying both traditional and novel analytical procedures.
Methods
Using data from the cross-sectional 2003–2006 National Health and Nutrition Examination Survey (n = 5607),...
Ten full-size (3.7×4.9m) plywood roof diaphragms were constructed using metal-plate-connected (MPC) common and hip wood trusses or joists, typical of single-family dwelling (SFD) construction. The specimens included three gable roof slopes of 33, 67, and 100%, a hip roof of 33% slope, and a flat roof, with a horizontal bottom...
Stabilization of the Yaquina Bay shoreline along the northeastern edge of the Hatfield Marine Science Center (HMSC) campus became necessary to halt erosion that threatened both HMSC critical infrastructure (seawater storage tank) and public access to the HMSC Nature Trail. A Dynamic Revetment (gravel beach) was installed in November, 2011...
MOTIVATION: The computational identification of gene transcription start sites (TSSs) can provide insights into the regulation and function of genes without performing expensive experiments, particularly in organisms with incomplete annotations. High-resolution general-purpose TSS prediction remains a challenging problem, with little recent progress on the identification and differentiation of TSSs which...
The traditional winter wheat (Triticum aestivum L.)–summer fallow (WW–SF) using conventional tillage (CT), the predominant cropping system in eastern Oregon, has increased soil erosion and depleted soil organic carbon (SOC). This research evaluates no-tillage (NT) systems designed to reduce these negative impacts on soil. In this long-term experiment (2004–2010), WW–SF...
Soil biodiversity through its delivery of ecosystem functions and attendant supporting ecosystem services—benefits soil organisms generate for farmers—underpins agricultural production. Yet lack of practical methods to value the long-term effects of current farming practices results, inevitably, in short-sighted management decisions. We present a method for valuing changes in supporting soil...
Intensive cultivation of native grassland for dryland agriculture continuously depleted soil organic carbon (SOC) and nutrients. In 2010, we evaluated the influence of 80 yr of crop residue and nutrient management practices on SOC and N in 0- to 60-cm soil depth profiles in conventionally tilled winter wheat (Triticum aestivum...
We report zero kinetic energy (ZEKE) photoelectron spectroscopy of benzo[h]quinoline (BhQ) via resonantly enhanced multiphoton ionization (REMPI) through the first electronically excited state S₁. From the simulated REMPI spectra with and without Herzberg–Teller coupling, we conclude that vibronic coupling plays a minor but observable role in the electronic excitation to...
Four new elaiophylin macrolides (1–4), together with five known elaiophylins (5–9), have been isolated from cultures of the Indonesian soil bacterium Streptomyces sp. ICBB 9297. The new compounds have macrocyclic skeletons distinct from those of the known dimeric elaiophylins in that one or both of the polyketide chains contain(s) an...
Hatchery-reared steelhead (Oncorhynchus mykiss) often have lower fitness than natural-origin fish when spawning in the wild. Fitness loss in hatcheries is partly due to genetic adaptation to captivity (domestication), but the underlying selection pressures driving adaptation remain unknown. Circumstantial evidence suggests that adaptation to hatcheries is accelerated when fish are...
A dog or a cat has an incidentally detected heart murmur if the murmur is an unexpected discovery during a veterinary consultation that was not initially focused on the cardiovascular system. This document presents approaches for managing dogs and cats that have incidentally-detected heart murmurs, with an emphasis on murmur...
The quality of macromolecular crystal structures depends, in part, on the quality and quantity of the data used to produce them. Here, we review recent shifts in our understanding of how to use data quality indicators to select a high resolution cutoff that leads to the best model, and of...
During explosive movements and potentially injurious situations the ability to rapidly generate torque is critical. Previous research has suggested different phases of rate of torque development (RTD) are differentiately controlled. However, the extent to which supraspinal and spinal mechanisms predict RTD at different time intervals is unknown. RTD of the...
A gene's duplication relaxes selection. Loss of duplicate, low-function DNA (fractionation) sometimes follows, mostly by deletion in plants, but mostly via the pseudogene pathway in fish and other clades with smaller population sizes. Subfunctionalization — the founding term of the Xfunctionalization lexicon — while not the general cause of differences...
Predators are often classed as prey specialists if they eat a narrow range of prey types, or as generalists if they hunt multiple prey types. Yet, individual predators often exhibit sex, size, age or personality-related differences in their diets that may alter the impacts of predation on different prey groups....
Exposure to arsenic early in life has been associated with increased risk of several chronic diseases and is believed to alter epigenetic programming in utero. In the present study, we evaluate the epigenome-wide association of arsenic exposure in utero and DNA methylation in placenta (n = 37), umbilical artery (n...
Farmers typically use three applications of glyphosate to control weeds in no-till fallow. Some are now experimenting with an unconventional modification to this widely used approach. This modified approach is based on an intentional delay in the time of the first spraying. Farmers delay their first spraying because they want...
Although ammonia-oxidizing archaea (AOA) and bacteria (AOB) coexist in most non-acidic agricultural soils, the factors that influence their relative contributions to soil nitrification activity remain unclear. A 2- to 4-d whole soil microcosm assay was developed, utilizing the aliphatic C₈ alkyne 1-octyne to inactivate AOB-driven nitrification activity without impacting AOA...
OBJECTIVES:
A key challenge for achieving universal water access in Sub-Saharan Africa is poor sustainability of water schemes. Previous studies have posited factors that may lead to failed schemes; however, empirical data are lacking.
METHODS:
We conducted direct observations of water sources and interviewed water committee members about governance in...
Electromagnetic wave propagation in complex dispersive media is governed by the time dependent Maxwell’s equations coupled to equations that describe the evolution of the induced macroscopic polarization. We consider “polydispersive” materials represented by distributions of dielectric parameters in a polarization model. The work focuses on a novel computational framework for...
Here we use SKS shear wave splitting observations from ocean-bottom seismometer data to infer patterns of mantle deformation beneath the Juan de Fuca plate and its adjoining boundaries. Our results indicate that the asthenosphere beneath the Juan de Fuca plate responds largely to absolute plate motion with an anisotropic layer...
Many species have multi-stage life cycles in which the youngest stages (e.g., larvae) are small, dispersive, and abundant, whereas later stages are sessile or sedentary. Quantifying survival throughout such early stages is critical for understanding dispersal, population dynamics, and life history evolution. However, dispersive stages can be very difficult to...
Understanding the precise role of the immune system in cancer has been hindered by the complexity of the immune response and challenges in measuring immune cell types in health and disease in the context of large epidemiologic studies. In this review, we present the rationale to study immunity in cancer...
In this Letter, we investigate the slow-light effect of subwavelength diffraction gratings via the Rayleigh anomaly using a fully analytical approach without needing to consider specific grating structures. Our results show that the local group velocity of the transmitted light can be significantly reduced due to the optical vortex, which...
Solar thermochemical energy storage has enormous potential for enabling cost-effective concentrated solar power (CSP). A thermochemical storage system based on a SrO/SrCO₃ carbonation cycle offers the ability to store and release high temperature (≈1200 °C) heat. The energy density of SrCO₃/SrO systems supported by zirconia-based sintering inhibitors was investigated for 15...
ACS Editors' Choice - This is an open access article published under an ACS AuthorChoice License, which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
The development of hybrids with enhanced expression of heterosis depends on the genetic background of the source population and the effectiveness of a breeding scheme used to identify and use divergent inbred lines with good combining ability. The present study was conducted to examine the potential of improved tropical reciprocal...
Resistance against Bean common mosaic virus (BCMV) in Phaseolus vulgaris is governed by six recessive resistance alleles at four loci. One of these alleles, bc-3, is able to protect P. vulgaris against all BCMV strains and against other potyviruses; bc-3 was identified as the eIF4E allele carrying mutated eukaryotic translation...
Dynamic bipedal robots, which are capable of versatile behaviour, are rare. Most bipedal robots are either versatile and static or dynamic and limited to specific gaits. Over the last twenty years the bio-inspired spring mass model became a versatile template for bipedal walking and running gaits with many studies motivated...
Dispersing hydrophilic nanofillers in highly hydrophobic polymer matrices is widely used to tune the mechanical properties of composite material systems. The ability to control the dispersion of fillers is closely related to the mechanical tunability of such composites. In this work, we investigate the physical–chemical underpinnings of how simple end-group...
PREMISE OF THE STUDY: Mosses, very diverse in modern ecosystems, are currently underrepresented in the fossil record. For the pre-Cenozoic, fossil mosses are known almost exclusively from compression fossils, while anatomical preservation, which is much more taxonomically informative, is rare. The Lower Cretaceous of Vancouver Island (British Columbia, Canada) hosts...
Nitric oxide (NO) is an essential agent of the innate immune system which exhibits multi-mechanistic antimicrobial activity. Previously, increased antimicrobial activity against E. coli with nitric oxide releasing nanoparticles (NO-np) was demonstrated when combined with glutathione, versus NO-np alone, due to formation of S-nitrosoglutathione (GSNO), a potent transnitrosylating agent. To...
In this paper, the methodology of the directed relation graph with error propagation and sensitivity analysis (DRGEPSA), proposed by Niemeyer et al. [Combustion and Flame 157 2010) 1760–1770], and its differences to the original directed relation graph method are described. Using DRGEPSA, the detailed mechanism of ethylene containing 71 species...
This study builds on a continued effort to document potential long-term research impacts on the individual, as well as to identify potential markers of survival for use in a field framework. The Transient Juvenile Steller sea lion (TJ) project was developed as a novel framework to gain access to wild...
Probabilistic event attribution (PEA) is an important tool for assessing the contribution of climate change to extreme weather events. Here, PEA is applied to explore the climate attribution of recent extreme heat events in California’s Central Valley. Heat waves have become progressively more severe due to increasing relative humidity and...
Objectives:
To compare the immediate postcounseling retention of important information using the traditional method with retention obtained using the Indian Health Service (IHS) interactive technique, and to compare the time required to counsel patients on new prescriptions using the traditional method with the time required using the IHS technique.
Design:...
An Expert Panel convened by the National Lipid Association previously developed a consensus set of recommendations for the patient-centered management of dyslipidemia in clinical medicine (part 1). These were guided by the principle that reducing elevated levels of atherogenic cholesterol (non–high-density lipoprotein cholesterol and low-density lipoprotein cholesterol) reduces the risk...
During the Deepwater Horizon oil well blowout in the Gulf of Mexico, the application of 7 million liters of chemical dispersants aimed to stimulate microbial crude oil degradation by increasing the bioavailability of oil compounds. However, the effects of dispersants on oil biodegradation rates are debated. In laboratory experiments, we...
This study used a three-year panel dataset for 350 Malawian farm households to examine the potential for widespread adoption of drought tolerant (DT) maize varieties, a technology that holds considerable promise for helping smallholder farmers in Sub-Saharan Africa (SSA) adapt to drought risk. Regression results revealed that DT maize cultivation...
The Last Interglacial (LIG) represents an invaluable case study to investigate the response of components of the Earth system to global warming. However, the scarcity of absolute age constraints in most archives leads to extensive use of various stratigraphic alignments to different reference chronologies. This feature sets limitations to the...
The ability to reconstruct past ocean currents is essential for determining ocean circulation’s role in global heat transport and climate change. Our understanding of the relationship between circulation and climate in the past allows us to predict the impact of future climate-driven circulation changes. One proposed tracer of past ocean...
We determined pore fluid rare earth element (REE) concentrations in near-surface sediments retrieved from the continental margin off Oregon and California (USA). These sites represent shelf-to-slope settings, which lie above, within, and below the oxygen minimum zone of the Northeast Pacific. The sediments are characterized by varying degrees of net...
Programmable conductive patterns created by photoexcitation of semiconductor substrates using digital light processing (DLP) provides a versatile approach for spatial and temporal modulation of THz waves. The reconfigurable nature of the technology has great potential in implementing several promising THz applications, such as THz beam steering, THz imaging or THz...