Background: Recent interest in reference-free deconvolution of DNA methylation data has led to several supervised methods, but these methods do not easily permit the interpretation of underlying cell types.
Results: We propose a simple method for reference-free deconvolution that provides both proportions of putative cell types defined by their underlying...
In recent years, spinel ferrites have attracted much attention as a merging material for oxygen reduction reaction (ORR),(1) advanced battery electrodes,(2, 3) and supercapacitors.(4, 5) Generally, the spinel structure can be described by a formula [X₁−λ²⁺Bλ³⁺]ᵀ[Xλ²⁺B₂−λ³⁺]ᴼ O₄, where λ is the inversion degree in-between 0 and 1, and superscripts T...
To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Antisense oligonucleotide (AO)-mediated exon-skipping therapeutics shows great promise in correcting frame-disrupting mutations in the DMD gene for Duchenne muscular dystrophy. However, insufficient systemic delivery limits clinical adoption. Previously, we showed that a glucose/fructose mixture augmented AO delivery to muscle in mdx mice. Here, we evaluated if fructose alone could enhance...
Three-dimensional chemical imaging of Fe–Cr alloys showing Fe-rich (α)/Cr-rich (α') phase separation is reported using atom probe tomography techniques. The extent of phase separation, i.e., amplitude and wavelength, has been quantitatively assessed using the Langer-Bar-on-Miller, proximity histogram, and autocorrelation function methods for two separate Fe–Cr alloys, designated 2101 and 2205....
Our objective was to identify the biological response and the cross-talk between liver and mammary tissue after intramammary infection (IMI) with Escherichia coli (E. coli) using RNAseq technology. Sixteen cows were inoculated with live E. coli into one mammary quarter at ~4–6 weeks in lactation. For all cows, biopsies were...
Trait-mediated indirect interactions (TMIIs) are an important component of food web structure and dynamics. We determined whether TMIIs occur in rocky tidepool communities on the west coast of the USA. In the laboratory, both adults and juveniles of the keystone predator Pisaster ochraceus and adults of a smaller predatory seastar...
Molecular dynamics simulations, conventional and metadynamics, were performed to determine the interaction of model protein Gb1 over kaolinite (001), Na⁺-montmorillonite (001), Ca²⁺-montmorillonite (001), goethite (100), and Na⁺-birnessite (001) mineral surfaces. Gb1, a small (56 residue) protein with a well-characterized solution-state nuclear magnetic resonance (NMR) structure and having α-helix, 4-fold β-sheet,...
One expectation of community-based participatory research (CBPR) is participant access to study results. However, reporting experimental data produced by studies involving biological measurements in the absence of clinical relevance can be challenging to scientists and participants. We applied best practices in data sharing to report the results of a study...
The Cs-effect states Cs⁺ has more covalent character in bonding interactions than the lighter alkalis. It is exploited in organic synthesis and influences behavior in water, most notably radioactive ¹³⁷Cs in nuclear wastes or the environment. Niobium polyoxometalates (Nb-POMs) provide a unique opportunity to probe aqueous phase ion-pairing responsible for...