The climate of the Pacific Northwest is in flux, and existing forest ecosystems are stressed and poised to shift in fundamental ways, with or without human intervention. This dissertation probes the nature of forest responses to environmental change through investigations of morphology and genetics of three species of alder co-occurring...
Scientists and land managers realize that integrated weed management (IWM) strategies are needed to attain successful and lasting improvements of weed infested landscapes. At this time no broadly reliable and environmentally safe IWM strategy has been developed to control exotic annual grasses that dominate many ecosystems of the northern Great...
Kincaid's lupine (Lupinus oreganus Heller) is a federally listed threatened species native to remnant grassland of western Oregon and southwestern Washington, and is the primary larval host plant of a once thought extinct butterfly, Plebejus icarioides fenderi Macy. Past studies concerning Kincaid's lupine reproduction
suggested that populations may suffer reductions...
This thesis summarizes work completed over the previous four years primarily focusing on chloroplast phylogenomic inquiry into the genus Pinus and related Pinaceae outgroups using next-generation sequencing on Illumina platforms. During the time of our work, Illumina sequence read lengths have essentially been limited to 25 to 100 base pairs,...
A fossil-calibrated phylogenetic framework based on exemplars from each of the four taxonomic sections within Pinus was created using multiple nuclear and chloroplast loci. Calibration at the well-defined subgeneric split within Pinus with either fossil leaves and cones (ca. 45 million years ago) or fossil wood (ca. 85 million years...
Disease detection through traditional techniques such as scouting fields on foot, molecular assays, or morphological identification of plant pathogens is time consuming and costly. Disease diagnosis in the field can be extremely subjective, and largely depends on the experience and knowledge of pathogen identification and disease quantification. This thesis provides...
Two new methods, one of broad specificity and the other of
narrow specificity, were developed for the identification of
agrobacteria. The former method was based on ribosomal antigens
that were common to members of the closely related Agrobacterium
and Rhizobium genera. Antisera to unwashed 50 S ribosomal subunits
from five...
Phytophthora pini Leonian, recently re-established from P. citricola
I, is a pathogen with a wide range of forest and nursery hosts. It causes foliar
infections in horticultural nurseries in Oregon, where recirculating irrigation
systems are common. Increased use of recirculating irrigation systems may
contribute to disease caused by waterborne plant...
Data from nuclear ribosomal internal transcribed spacer regions (nrITS) and chloroplast DNA (cpDNA) have failed to resolve phylogenetic relationships in Pinus. To provide greater interspecific resolution, five low-copy nuclear genes were developed from mapped conifer anchor loci. Four genes were sequenced from species representing all Pinus subsections. Individual loci do...