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Filtering by: Creator Welter, Stephen C. Remove constraint Creator: Welter, Stephen C. Degree Field Computer Science Remove constraint Degree Field: Computer Science Degree Name Master of Science (M.S.) Remove constraint Degree Name: Master of Science (M.S.)

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  • Variant Annotation

    Creator:
    He, Jun
    Abstract:
    With the development of technologies in genome sequencing and variant detection, a huge number of variants are detected. To further analyze the variants, it requires an efficient tool to annotate the functional effect of variants. This project managed to develop an efficient program to annotate the functional effect of variants...
    Resource Type:
    Capstone Project
    Full Text:
    approved: Stephen Ramsey With the development of technologies in genome sequencing and variant detection

  • Exploration of regression models for cancer noncoding mutation recurrence

    Creator:
    Xu, Tanjin
    Abstract:
    An important impact of the genome technology revolution will be the elucidation of mechanisms of cancer pathogenesis, leading to improvements in the diagnosis of cancer and the selection of cancer treatment. Integrated with current well-studied massive knowledge and findings about the role of protein-coding mutations in cancer, demystifying the functional...
    Resource Type:
    Masters Thesis
    Full Text:
    for Cancer Noncoding Mutation Recurrence Abstract approved: Stephen A. Ramsey An important impact

  • A C source code browsing system

    Creator:
    Steinkamp, James M.
    Abstract:
    A project is described wherein a source code browser was implemented based upon tasks performed by software engineers looking for source code modules with only UNIX utilities. These tasks were discovered by observing the actions of software engineers looking for code modules in a library, The success of the implementation...
    Resource Type:
    Capstone Project
    Full Text:
    ) A C Source Code Browsing System Produced for an Oregon

  • On asymmetric error-correcting codes

    Creator:
    Cunningham, Robert Stephen
    Abstract:
    Historically, coding theory has dealt with binary codes correcting symmetric errors, in which errors are made in both 0 and 1 bits with equal likelihood. Within the past ten years, some study has been made of asymmetric codes, under the assumption that the only errors which occur are errors in...
    Resource Type:
    Masters Thesis
    Full Text:
    THESIS OF Robert Stephen Cunningham for the degree of Master of Science in Computer Science presented

  • PC++ : an extension of C++ for parallel programming

    Creator:
    Bae, Myungmun
    Abstract:
    Understanding of techniques that can be used to develop software for various parallel machines has not fully matched the dramatic progress in hardware in recent years. Most parallel programming techniques have been closely tied to specific hardware. Different machines have different primitives and architectures. Programming and porting an application with...
    Resource Type:
    Capstone Project
    Full Text:
    ) PC++: An Extension of c++ for Parallel Programming

  • Trip Poll: Plan before you ride

    Creator:
    Baisetti, Rama Krishna
    Abstract:
    People like going on trips with friends and tend to plan their trips well in advance to have the best possible experience of a destination and get the most out of the places they visit and/or the activities they plan to partake in. Right now, the Internet provides a wealth...
    Resource Type:
    Capstone Project
    Full Text:
    do we need to stay if planning for long trips? c. What are some good places to eat around? d. How

  • A Formal Foundation for Variational Programming Using the Choice Calculus

    Creator:
    Hubbard, Spencer
    Abstract:
    In this thesis, we present semantic equivalence rules for an extension of the choice calculus and sound operations for an implementation of variational lists. The choice calculus is a calculus for describing variation and the formula choice calculus is an extension with formulas. We prove semantic equivalence rules for the...
    Resource Type:
    Masters Thesis
    Full Text:
    Coq proof assistant. c© Copyright by Spencer Hubbard June 1, 2016 All Rights Reserved A Formal

  • Visualization and analysis of sensor data for detecting microclimate cold air pools

    Creator:
    Singh, Satpreet Harcharan
    Abstract:
    Cold air pools are spatiotemporal phenomena that occur when cold air from higher elevations roll down the slope to accumulate in lower elevations. Behaviors like this lead to microclimate anomalies such as the city of Corvallis (Oregon) experiencing persistent cold weather even on a sunny day. We analyze multivariate temperature...
    Resource Type:
    Masters Thesis
    Full Text:
    studies to assess their performance under different microclimatic and sensor-performance conditions. c

  • Machine Learning Methods for the Discovery and Analysis of MicroRNAs

    Creator:
    Bell, Jimmy D.
    Abstract:
    MicroRNAs are a highly conserved class of small endogenous RNA, about ~22nt in length, involved in post-transcriptional gene silencing and have prominent roles in disease and development. Though the process of microRNA discovery was once an arduous task, the advent of high throughput sequencing technology has resulted in novel microRNAs...
    Resource Type:
    Masters Thesis
    Full Text:
    -7-Novel2 and fca-let-7-Novel3 (Figure 2.18a). The predicted novel miRs (Figure 2.18b-c) have

  • Causal Structure Learning from Experiments and Observations

    Creator:
    Sinha, Meghamala
    Abstract:
    In this research, we address the problem of learning a single causal network structure from multiple dataset generated from different experiments. The experiments can be observational or interventional. We assume that each dataset is generated by an unknown causal network altered under different experimental conditions (interventions, manipulation or perturbation). As...
    Resource Type:
    Masters Thesis
    Full Text:
    interventions. c©Copyright by Meghamala Sinha March 22, 2019 All Rights Reserved Causal Structure