Index Catalog // ScholarsArchive@OSU

Harnessing Heterogeneity in Human Gut Microbiome Data

Creator:: Tataru, Christine
Abstract:: The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Resource Type:: Dissertation
Full Text:: : Harnessing Heterogeneity in Human Gut Microbiome Data Abstract approved: Maude M. David The focus of this

Ecophylogenetic Characterization of the Gut Microbiome of At-risk Companion and Food Animals

Creator:: Kirchoff, Nicole S.
Abstract:: Agricultural and companion animals are integral to our way of life as they provide us with nourishment, financial resources, transportation, and companionship. However, pets, managed animals in the agricultural industry, as well as wild populations of food animals are all subject to health and mortality risks. The gut microbiome is...
Resource Type:: Dissertation
Full Text:: : Ecophylogenetic Characterization of the Gut Microbiome of At-risk Companion and Food Animals Abstract

The purification and characterization of the fructose 1,6-diphosphate aldolase from Vibrio marinus, an obligately psychrophilic marine bacterium

Creator:: Jones, Larry Paul
Resource Type:: Dissertation
Full Text:: THESIS OF LARRY PAUL JONES for the DOCTOR OF PHILOSOPHY (Name of student) (Degree) in Microbiology

An investigation of carbon and nitrogen metabolism through a genomic analysis of the genus Nitrobacter

Creator:: Starkenburg, Shawn R.
Abstract:: The chemolithoautotrophic nitrite oxidizing bacteria (NOB) participate in the biogeochemical cycling of nitrogen by catalyzing and conserving energy from the oxidation of nitrite (NO₂-) to nitrate (NO₃-) via a nitrite oxidoreductase (NXR). The main objective of this work was to comparatively annotate and analyze the genome sequences of Nitrobacter winogradskyi...
Resource Type:: Dissertation
Full Text:: : ___________________________________________________________ Peter J. Bottomley The chemolithoautotrophic nitrite oxidizing bacteria (NOB) participate

Detection and transmission of Mycobacterium marinum and Mycobacterium chelonae in zebrafish (Danio rerio)

Creator:: Peterson, Tracy Shawn
Abstract:: Mycobacteriosis is a common disease of laboratory zebrafish (Danio rerio). Different infection patterns occur in zebrafish depending on mycobacterial species. Mycobacterium marinum and M. haemophilum produce virulent infections associated with high mortality, whereas M. chelonae is more wide spread and not associated with high mortality. Identification of mycobacterial infections to...
Resource Type:: Dissertation
Full Text:: Geller and Larry Curtis. Robert Tanguay has been instrumental in helping me to establish my career, by

Incidence and significance of bacterial chitinase in the marine environment

Creator:: Goodrich, Thomas Dale
Abstract:: The marine vibrio ANT-500 is a typical psychrophile. The growth range of the bacterium at 35‰ S is from a maximum growth temperature of 13.5 C to a minimum growth temperature of -2.5 C or less with the optimum near 7 C. The bacterium elaborates its chitinase enzymes between the...
Resource Type:: Dissertation
Full Text:: correlations were noted between gut content and chitinase activity in the gut, gut content and percent

Regulation of exopolysaccharide synthesis

Creator:: Dierksen, Karen P.
Abstract:: Lactococcus lactis subsp. cremoris Ropy 352 and L. lactis subsp. cremoris Hollandicus produce an exopolysaccharide (EPS) that imparts commercially desirable textural and rheological properties to fermented milk products. This ropy phenotype is expressed under specific environmental conditions. A mucoid EPS phenotype, also expressed under specific environmental conditions, but not involved...
Resource Type:: Dissertation
Full Text:: The Trempy lab: Don Chen, Jim Marks, T. J. White, Wolfgang Ebel, Mary Jane Nather, Rockie Yarwood

Infection and immune response induced by Vibrio anguillarum in juvenile coho salmon (Oncorhynchus kisutch)

Creator:: Groberg, Warren J.
Abstract:: Immunity in juvenile coho salmon (Oncorhynchus kisutch) was evaluated after immunization against vibriosis by parenteral, oral or immersion methods. Relative levels of immunity were determined by protection of fish from experimental water-borne challenges with Vibrio anguillarum and by serum agglutination titers. Coho salmon eggs were exposed to bacterin during artificial...
Resource Type:: Dissertation
Full Text:: Anguillarum in Juvenile Coho Salmon (Oncorhynchus kisutch) AN ABSTRACT OF THE THESIS OF Warren "J" Groberg

Location of Vibrio anguillarum antigen in tissues of immune and non-immune rainbow trout (Salmo gairdneri) using the fluorescent antibody technique

Creator:: Nelson, Jim Steel
Resource Type:: Dissertation
Full Text:: who made this project possible: To Dr. J. L. Fryer for his excellent guidance and advice. To the

Bacteriologic, immunologic and pathogenic studies of Vibrio spp. pathologic to salmonids

Creator:: Ransom, David Peter
Abstract:: Fish diseases and various parameters associated with disease caused mortality of fish were monitored at the Oregon State University Marine Science Center and at a private mariculture facility on Yaquina Bay during a period of five years. Nearly all disease problems observed were caused by Vibrio anguillarum and Vibrio spp....
Resource Type:: Dissertation
Full Text:: : Dr. J. L. Fryer for excellent guidance and many hours of work with grant proposals and progress

ScholarsArchive@OSU

Harnessing Heterogeneity in Human Gut Microbiome Data

Ecophylogenetic Characterization of the Gut Microbiome of At-risk Companion and Food Animals

The purification and characterization of the fructose 1,6-diphosphate aldolase from Vibrio marinus, an obligately psychrophilic marine bacterium

An investigation of carbon and nitrogen metabolism through a genomic analysis of the genus Nitrobacter

Detection and transmission of Mycobacterium marinum and Mycobacterium chelonae in zebrafish (Danio rerio)

Incidence and significance of bacterial chitinase in the marine environment

Regulation of exopolysaccharide synthesis

Infection and immune response induced by Vibrio anguillarum in juvenile coho salmon (Oncorhynchus kisutch)

Location of Vibrio anguillarum antigen in tissues of immune and non-immune rainbow trout (Salmo gairdneri) using the fluorescent antibody technique

Bacteriologic, immunologic and pathogenic studies of Vibrio spp. pathologic to salmonids

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