Nearly 3000 juvenile Chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon captured in nearshore waters off the coasts of Washington and Oregon from 1999-2004 were tested for infection by Renibacterium salmoninarum, Nanophyetus salmincola, and skin metacercariae. First, three quantitative PCR primer/probe sets were compared for detection of R. salmoninarum; amplification...
The bioavailability of chemical compounds in the marine environment fundamentally influences the growth and physiology of microorganisms. Organic and inorganic chemicals that are produced by some marine plankton can be consumed by other plankton for energy production, growth, or to initiate essential physiological processes. Cultures of the diatom Thalassiosira pseudonana,...
The in vitro effects of cortisol in regulating salmonid B cell functions were
investigated. B cells at three distinct stages of differentiation were examined for
cortisol sensitivity. B lymphocyte responses were examined 1) during the early stage
of the precursor, 2) during the intermediate stage of differentiation associated with
clonal...
Myxobolus cerebralis, a myxozoan parasite of salmonids, is the causative agent of whirling disease. The parasite is considered widespread throughout northeastern Oregon in the Grande Ronde and Imnaha River basins where threatened and endangered salmonid populations exist. The work presented in this thesis comprises several studies that assess the effects...
In this thesis, we examined the effects of the exposures to anthropogenic pollutants on the fish, primarily juvenile chinook salmon, immune system using newly and recently developed immune assays. In addition, we developed a new assay for measuring immunocompetence of fish. In the first chapter, the Alamar Blue assay was...
Myxobolus cerebralis, a myxozoan parasite that infects almost all species of wild and cultured salmonids, was first identified in northeastern Oregon in the Lostine River in 1986. Fish that are heavily infected with M. cerebralis develop whirling disease, which was determined to be the cause of catastrophic declines in rainbow...
Wild fish populations are typically infected with a variety of micro- and macroparasites that may affect fitness and survival, however, there is little published information on parasite distribution in wild juvenile salmonids in three upper tributaries of the Willamette River, OR. The objectives of this survey were to document (1)...
The myxozoan parasite of salmonids, Ceratomyxa shasta, is established throughout the Klamath River, CA-OR, with high parasite densities below the series of dams and above the dams (upper basin) in the northernmost tributary, the Williamson River (WMR). Two objectives were designed to address concerns about C. shasta effects on reintroduced...
Ceratomyxa shasta infects salmonids in the Pacific Northwest (PNW) of North America, occasionally causing losses in wild and captive populations. Host-specific parasite genotypes (O, I, II, III) were previously characterized molecularly using markers in the ribosomal DNA and phenotypically by type host in the Klamath River, CA/OR. This thesis sough...
Erythrocytic inclusion body syndrome (EIBS), a viral disease
of salmon, was investigated. Reliable artificial infections were
established in coho salmon (Oncorhynchus kisutch) via
intraperitoneal injection of homogenized kidney, spleen, and blood
from naturally infected animals. By examining the exposed fish
periodically for viral inclusion bodies and hematocrits, the disease
progression...
The waterborne, myxozoan parasite Ceratonova shasta is endemic to the Pacific Northwest and can be lethal to its secondary salmonid host, including the culturally, economically, and recreationally important spring Chinook salmon (Oncorhynchus tshawytscha) of the Deschutes River, OR. Previously described genotypes of C. shasta exhibit specificity with their salmonid hosts....
Toxin production by cyanobacterial harmful algal blooms (cyanoHABs) in freshwater systems has lasting ecological and human impacts. Nutrients, light availability, hydrology, and microbial community composition impact the frequency and intensity of toxic cyanoHABs. Climate change will exacerbate toxic cyanoHABs, making real time and predictive monitoring a vital tool for managing...
Crown gall disease is caused by the ubiquitous soil bacterium Agrobacterium tumefaciens which transfers a portion if DNA (T-DNA) into the plant cell. Preventing infection by using the biocontrol strain Agrobacterium radiobacter K84 is currently the only defense for crown gall. Two different resistance strategies were examined in this work....
We have developed crown-gall resistant transgenic plants capable of suppressing Agrobacterium tumefaciens T-DNA oncogenes. Crown gall tumors result from overproduction of auxin and cytokinin in plant cells transformed by A. tumefaciens. High phytohormone levels result from expression of two auxin biosynthetic genes, tryptophan monooxygenase (iaaM) and indole acetamide hydrolase (iaaH),...
Limnology is undergoing a transition to high-throughput -omic analysis of freshwater
bacterial communities. An important first step in making the transition is to
characterize several genomes that can be used as references to guide metagenome
assembly and analysis. Here I characterize four new freshwater cyanobacterial
genomes, a pair of lake...
Pre-spawning mortality (PSM) presents a major problem for population recovery of spring Chinook salmon (Oncorhynchus tshawytscha) in the Willamette River basin. In certain reaches and years, PSM has exceeded 90%. Histology has been used as the primary diagnostic method to investigate PSM in the Chinook Salmon, and a collection of...
Plant viruses have been instrumental in our understanding of the biophysical properties pertaining to non-enveloped icosahedral virus particles. A substantial amount of research has been performed over five decades on Turnip yellow mosaic virus (TYMV), arguably one of the most extensively studied icosahedral plant viruses and the type-member of the...
The foundation of the research compilation presented here began
with the derivation of an improved method for obtaining optimal in vitro
mitogenic responses in salmonid lymphocyte cultures by utilizing
autologous or homologous plasma as the primary serum supplement. It was
observed that lymphocytes which were previously unresponsive to
mitogenic challenge...
Humans and viral disease are inextricably intertwined. Viral disease plays an immeasurable role in human life, from the disease and economic burden associated with every facet of contending with human viral disease, to managing the consequences of viral disease in organisms important to our food supply, economy, and entertainment. The...