Phytoplankton are a sentinel class of organisms in the marine environment. Through their photosynthetic activity in sunlit waters worldwide, phytoplankton shape the health and productivity of marine ecosystems and impact the global climate. In this work a range of ocean sensing technologies (via ships, surf zone sampling, moorings, gliders, and...
Contiential margins on plate boundaries are complex systems with morphologies and characteristics dictated by the interplay of sediment deposition and erosion, tectonic faulting, folding, and strong ground motion generating mass wasting events. With ever increasing advances in high-resolution remote sensing techniques these systems are increasingly becoming illuminated.
A ~120 km...
Changes in environmental conditions in marine ecosystems could directly or indirectly influence distribution, abundance, settlement, and size at settlement of flatfish. Understanding species-specific and age-specific responses to environmental variability is important for managing commercially important flatfish stocks. Slope-spawning flatfish whose offspring rely on extensive drift from the slope (spawning) to...
Small pelagic fishes (SPF), such as anchovies and sardines, are ecologically important due to their large abundance and intermediate trophic position that links plankton production to upper trophic levels. They are also economically important, supporting large fisheries that contribute to one fourth of the world fish landings. Reproductive success in...
When adult spawning and juvenile settling locations of marine fishes are
geographically separated, their early life history stages must rely on transport and
their own behavior to move them toward suitable habitats for successful recruitment
to the juvenile phase. Variations in climate may reduce the availability of spawning
and juvenile...
Tropical coral reef ecosystems are very important from both the ecological and economical
points of view. However, they are also particularly fragile, and have been
declining in recent years in most regions of the world, since they are highly susceptible
to anthropogenic stressors operating at global scales (e.g., global warming...
Paleoclimate archives have revealed abrupt climate events that are superimposed on more gradual climate changes throughout the last glacial and deglacial periods. The underlying causes of such rapid climate changes are still poorly understood, but the strong expression of these events in northern hemisphere records likely points to climatic mechanisms...
Freshwater provided from river discharge influences the dynamics and circulation of most continental shelves around the world. It has profound effects on the transport and fate of materials and substances originated from rivers and estuaries, as well as on the ocean biogeochemistry and marine ecosystems. The effect of buoyancy forcing...
A three-part study was conducted into the impact of physiological and ecological variables on the net isotopic fractionation of hydrogen, α[subscript K₃₇], expressed in C₃₇ alkenones. First, alkenone-producer production, abundance, and export were characterized in the summertime Gulf of California and Eastern Tropical North Pacific using compound-specific, labeled in situ...
Wind-driven coastal upwelling brings subsurface water onto the central-Oregon shelf after the spring transition each year. This cold and salty source water is oxygen-poor, yet above the hypoxic threshold, dissolved oxygen < 1.4 ml l⁻¹. Once on the shelf, dissolved oxygen (DO) concentrations of upwelled near-bottom waters are modified by...
Antarctic Ice Sheet mass balance and, hence, sea level change is affected by the floating extensions of outlet glaciers and ice streams that take up about 44% of the coastline (Drewry et al., 1982) and are referred to as "ice shelves". Ice sheet mass loss accelerates when these ice shelves...
Quantifying the mass transport through marine sediments, and the geochemical response to such flow with numerical models has become a common and powerful approach for geochemical data interpretation. In this dissertation, I developed and applied transport-reaction models to unravel complex and interdependent reactions involving carbon, sulfur and silica transformations in...
Influences of tidal and slower (subtidal) oceanic flows over the continental shelf and slope off Oregon are studied using a high-resolution ocean circulation model and comparative model-data analyses. The model is based on the Regional Ocean Modeling System (ROMS), a fully nonlinear, three-dimensional model (using hydrostatic and Boussinesq approximations). The...
Analogous to ocean surface waves, waves in the ocean interior also experience steepening, breaking, and dissipation as they approach the coastline. Much less is known about this internal beach. In this work, extensive moored Acoustic Doppler Current Profiler and temperature/salinity data together with optical remote sensing are combined to describe...
Subduction zone earthquake and tsunami hazards affect tens of millions worldwide and the recurrence of these disasters can be evaluated with paleoseismic techniques, because earthquake cycles (and their supercycles) typically span many millennia. In these three chapters, I discuss a suite of analyses I use to evaluate the sedimentary record...
Euphausia pacifica, the North Pacific krill, is a key grazer in the California Current System and an important prey item for consumers such as salmon, seabirds, and whales. As a crucial link between phytoplankton and higher trophic levels, it is essential to understand both the behavior and bioenergetics of this...
A new method is introduced for incorporating bathymetric uncertainty into predictions of nearshore and river flows (i.e., unstratified flows primarily forced by pressure and radiation stress gradients). The method involves the use of the ensemble Kalman filter (EnKF) as a parameter estimation scheme, where the parameter to be estimated is...
The influence of mesoscale ocean eddies on near-surface ocean temperature, surface stress and phytoplankton communities is investigated by collocating numerous satellite measurements along with vertical profiles of oceanic temperature and salinity to the interiors of eddies identified and tracked in altimetric sea surface height maps.
The surface currents associated with...
Understanding and modeling microbial responses and feedbacks to climate change is hampered by a lack of a framework in the pelagic environment by which to link local mechanism to large scale patterns. Where terrestrial ecology draws from landscape theory and practice to address issues of scale, the pelagic seascape concept...
Marine sediments contain an abundance of methane that is biologically produced
and plays a significant role in the global carbon cycle. Microbes responsible for the
carbon cycle in marine sediments, and the processes that they carry out, need to be
characterized in order to fully understand the role of this...
The deglacial behavior of the sub-Arctic North Pacific is poorly constrained, with many published records suffering from limited age control due to extensive post- depositional biogenic carbonate dissolution. Potential alternative dating methods could include the correlation of stable-isotopic and/or paleomagnetic secular variation records to an independently-dated regional template, however no...
Carbon dioxide (CO₂) fluxes between the ocean and atmosphere on continental margins are difficult to diagnose because these regions experience large variability over spatial and temporal scales spanning meters to basins and hours to years, respectively. In a global sense, continental margins could represent a significant atmospheric CO₂ sink, equivalent...
The subaerial beach, composed of sand dunes and the foreshore, provides a natural buffer zone between vulnerable land and the dissipation of storm wave energy due to wave breaking. The natural beauty of this region is attractive to people, and as a result, significant investment has been placed in this...
Tide-topography coupling is important for understanding surface-tide energy loss, the intermittency of internal tides, and the cascade of internal-tide energy from large to small scales. Although tide-topography coupling has been observed and modeled for 50 years, the identification of surface and internal tides over arbitrary topography has not been standardized....
This dissertation investigates the dynamics of the tidally modulated outflow from the Columbia River mouth using high resolution measurements of velocity, density and turbulent microstructure. At high tide, flow through the river mouth reverses from flood (onshore) to ebb (offshore). During ebb, buoyant fluid issues from the river mouth and...
Instability and turbulence in sheared, salt-fingering favorable stratification are studied
using three-dimensional direct numerical simulations (DNS). Salt-fingering favorable
stratification is gravitationally stable, because the unstable vertical gradient of salinity
is stabilized by temperature (warm, salty over cool, fresh water-masses). Salt-fingering
instability can occur at the interface of these different water-masses....
Small pelagic fish represent a critical trophic link between plankton and large predators in marine upwelling ecosystems such as the California Current System. Populations of these fish are highly variable over time and are characterized by extreme fluctuations in abundance, which have significant ecosystem impacts. The causes driving
this instability...
Dramatic and ongoing changes pervading the Arctic and subarctic seas over
recent decades have motivated this effort to track and better understand hydrographic
variability using chemical tracers. Particular emphasis has been paid to differentiating
freshwater contributions to upper layers: namely Pacific water, meteoric water, and
sea-ice melt/formation.
Data collected in...
The marine climate of the Galapagos is spatially and seasonally
heterogeneous. A taxonomically comprehensive study of Galapagos zooplankton has
never been done. This study is an initial effort to establish the distribution and
community structure of zooplankton in the Archipelago. I collected zooplankton
samples by vertical tows over the Galapagos...
The long-term evolution of Gaussian eddies is studied in an equivalent barotropic model using both linear and nonlinear quasi-geostrophic theory in an attempt to understand westward propagating satellite altimetry tracked mesoscale eddies. By examining both individual eddies and a large basin seeded with eddies, it is shown that long term...
The properties and evolution of nonlinear internal waves (NLIWs) depend
upon the background conditions within which waves form, propagate, and dissipate. As a result, the NLIW field on the New Jersey shelf displayed dramatic variability during the Shallow Water 2006 experiment. Wave variability was exhibited by 1) amplitudes that ranged...
We examine the interactions and feedbacks between bathymetry, waves, currents, and
sediment transport. The first two pro jects focus on the use of remote sensing techniques
to expand our knowledge of the nearshore. Due to the plethora of snap-shot data that is
available from satellites and their distribution via Google...
A benthic microbial fuel cell (BMFC) is an electrochemical device that
generates current from the redox gradient at the sediment-water interface. Early
prototypes had anodes buried in anoxic sediments and cathodes in overlying water.
The BMFCs described in this dissertation are based on a chamber design that enables
the use...
The local and remote sources of variability of the South Atlantic Ocean are investigated using a set of numerical experiments and satellite data. A global, eddy-permitting, numerical simulation is analyzed to investigate the dynamical links between the Antarctic Circumpolar Current (ACC) and the Malvinas Current (MC). The model results indicate...
This thesis investigates the influence of early diagenesis on trace metal and
molybdenum isotope behavior in marine and lacustrine environments. Chapter one is a
synthesis of previous research in all the marine environments investigated, providing an
essential geochemical context for interpreting the observed behavior of Mo in these settings.
Chapter...
The inherent and apparent optical properties of different ocean regimes are the basis for all optical remote sensing of the ocean. Ecological information derived from remote sensors therefore relies on having a detailed understanding of how particulate backscattering and absorption contribute to the bulk optical signal. The absorption
characteristics of...
Oceanic crust covers nearly 70% of the Earth's surface, of which, the upper,
sediment layer is estimated to harbor substantial microbial biomass. Marine crust;
however, extends several kilometers beyond this surficial layer, and includes the
basalt and gabbro layers. In particular, the basalt layer has high permeabilities which
allows for...
Diatoms are a ubiquitous group of plankton responsible for 20-40% of oceanic
primary production, and a higher fraction of organic matter export to the ocean
interior. Diatoms actively transport dissolved inorganic silicon into their cells, and
through the process of silicification (i.e. biogenic silica production) they build tough
and intricate...
In eastern boundary current upwelling ecosystems, mesoscale circulation features such as eddies and upwelling filaments play a prominent role in the transfer of water and the associated plankton from the productive nearshore to the oligotrophic deep sea. The relationship between mesoscale circulation, zooplankton distributions, and the across-shelf transport of coastal...
This research incorporates geochemical and helium isotopic analyses of Lau Basin volcanic glasses, along with helium isotopic analyses of water column hydrothermal plumes to better understand the processes that control the formation and evolution of this backarc basin. Lavas newly collected from the four southernmost segments of the Valu Fa...
Waves are the primary input of energy in the nearshore region, and together with the currents forced through the transfer of momentum that occurs during the wave breaking process they are the principal mechanism for sediment transport in the nearshore. The basic physics of waves and currents are thought to...
Interactions between surface winds and meanders in mid-latitude sea surface temperature
(SST) fronts with horizontal length scales of 100-1000 km are investigated
from satellite observations and numerical simulations. Observations from the Sea-
Winds scatterometer on the QuikSCAT satellite show that the magnitude, direction,
curl, and divergence of the surface wind...
This investigation focuses on gaining a better understanding of the complex relationship between melt generation, source variability and mid-ocean ridge morphology. The approach adopted here uses a variety of geochemical techniques to evaluate the ability of 'global' models to predict regional scale geochemical variability associated with axial depth and axial...
This research focuses on the development of new techniques to explore terrestrial-ocean climate linkages along the Pacific Northwest-northeast Pacific Ocean margin. This is done by investigating river response to climate change and by unraveling this history preserved in continental margin sediments. A significant component of this work centers on developing...
Inner-shelf circulation and mechanisms of across-shelf transport of water masses were examined using seven years of observations collected by the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) program, a long-term monitoring effort along the central Oregon coast. Since 1998, moored velocity and hydrographic measurements have been obtained during the...
Plate boundaries are commonly regions of complex, diffuse deformation with
the motion across the boundary accommodated by numerous structural systems, rather
than being narrow, discrete zones of deformation. One such boundary occurs where
the North American plate makes contact with Juan de Fuca, Gorda, and Pacific plates
along the west...
The biological transformation of dinitrogen gas (N2) into combined forms(termed N2 fixation) by certain genera of oceanic cyanobacteria represents the largest incoming flux of nitrogen to the global ocean. As such, biological nitrogen fixation
plays a significant role in the regulation of oceanic productivity and the export of
carbon and...
The mathematical and physical connections between three different ways of quantifying linear predictability in geophysical fluid systems are studied in a series of analytical and numerical models. Normal modes, as they are traditionally formulated in the instabilities theories of geophysical fluid dynamics, characterize the asymptotic development of disturbances to stationary...
Our view of phytoplankton has historically revolved around their inability to
control their location in space. The term phytoplankton itself underscores this
particular difference between phytoplankton and their sessile terrestrial counterparts.
Yet there are other differences between land plants and the phytoplankton that are
perhaps equally important, beyond this sessile-planktonic...
Experiments were designed to answer key questions about diatom-derived organic matter cycling (i.e., production and degradation) in coastal systems. Dissolved organic matter (DOM) production was examined in axenic batch cultures of five diatom species. Dissolved organic carbon (DOC) release rates varied between species, but were significantly higher for all species...