The marine climate of the Galapagos is spatially and seasonally
heterogeneous. A taxonomically comprehensive study of Galapagos zooplankton has
never been done. This study is an initial effort to establish the distribution and
community structure of zooplankton in the Archipelago. I collected zooplankton
samples by vertical tows over the Galapagos...
Discrete layers of phytoplankton and zooplankton were observed over the Oregon continental shelf in summer and fall of 2001 and summer 2002 using optical and acoustical technologies and a pump sampling system. Layers of phytoplankton had steep vertical gradients which were associated with gradients in density and local peaks in...
In eastern boundary current upwelling ecosystems, mesoscale circulation features such as eddies and upwelling filaments play a prominent role in the transfer of water and the associated plankton from the productive nearshore to the oligotrophic deep sea. The relationship between mesoscale circulation, zooplankton distributions, and the across-shelf transport of coastal...
A benthic microbial fuel cell (BMFC) is an electrochemical device that
generates current from the redox gradient at the sediment-water interface. Early
prototypes had anodes buried in anoxic sediments and cathodes in overlying water.
The BMFCs described in this dissertation are based on a chamber design that enables
the use...
Instability and turbulence in sheared, salt-fingering favorable stratification are studied
using three-dimensional direct numerical simulations (DNS). Salt-fingering favorable
stratification is gravitationally stable, because the unstable vertical gradient of salinity
is stabilized by temperature (warm, salty over cool, fresh water-masses). Salt-fingering
instability can occur at the interface of these different water-masses....
Tide-topography coupling is important for understanding surface-tide energy loss, the intermittency of internal tides, and the cascade of internal-tide energy from large to small scales. Although tide-topography coupling has been observed and modeled for 50 years, the identification of surface and internal tides over arbitrary topography has not been standardized....
Analogous to ocean surface waves, waves in the ocean interior also experience steepening, breaking, and dissipation as they approach the coastline. Much less is known about this internal beach. In this work, extensive moored Acoustic Doppler Current Profiler and temperature/salinity data together with optical remote sensing are combined to describe...
The inherent and apparent optical properties of different ocean regimes are the basis for all optical remote sensing of the ocean. Ecological information derived from remote sensors therefore relies on having a detailed understanding of how particulate backscattering and absorption contribute to the bulk optical signal. The absorption
characteristics of...
The local and remote sources of variability of the South Atlantic Ocean are investigated using a set of numerical experiments and satellite data. A global, eddy-permitting, numerical simulation is analyzed to investigate the dynamical links between the Antarctic Circumpolar Current (ACC) and the Malvinas Current (MC). The model results indicate...
The principal salinity extrema and extremum surfaces of the
world ocean are described by the analysis and plotting of data from
885 hydrographic stations in the three major oceans, the Southern
Ocean, and the American Mediterranean Sea. The distributions of
salinity, temperature, depth, and density along the extremum surfaces,
plotted...
When adult spawning and juvenile settling locations of marine fishes are
geographically separated, their early life history stages must rely on transport and
their own behavior to move them toward suitable habitats for successful recruitment
to the juvenile phase. Variations in climate may reduce the availability of spawning
and juvenile...
This thesis investigates the influence of early diagenesis on trace metal and
molybdenum isotope behavior in marine and lacustrine environments. Chapter one is a
synthesis of previous research in all the marine environments investigated, providing an
essential geochemical context for interpreting the observed behavior of Mo in these settings.
Chapter...
This research focuses on the development of new techniques to explore terrestrial-ocean climate linkages along the Pacific Northwest-northeast Pacific Ocean margin. This is done by investigating river response to climate change and by unraveling this history preserved in continental margin sediments. A significant component of this work centers on developing...
Antarctic Ice Sheet mass balance and, hence, sea level change is affected by the floating extensions of outlet glaciers and ice streams that take up about 44% of the coastline (Drewry et al., 1982) and are referred to as "ice shelves". Ice sheet mass loss accelerates when these ice shelves...
Freshwater provided from river discharge influences the dynamics and circulation of most continental shelves around the world. It has profound effects on the transport and fate of materials and substances originated from rivers and estuaries, as well as on the ocean biogeochemistry and marine ecosystems. The effect of buoyancy forcing...
Interactions between surface winds and meanders in mid-latitude sea surface temperature
(SST) fronts with horizontal length scales of 100-1000 km are investigated
from satellite observations and numerical simulations. Observations from the Sea-
Winds scatterometer on the QuikSCAT satellite show that the magnitude, direction,
curl, and divergence of the surface wind...
Diatoms are a ubiquitous group of plankton responsible for 20-40% of oceanic
primary production, and a higher fraction of organic matter export to the ocean
interior. Diatoms actively transport dissolved inorganic silicon into their cells, and
through the process of silicification (i.e. biogenic silica production) they build tough
and intricate...
Recent organic-rich deposits on the Peru continental margin
occur along the upper slope (100-450 m) between about ll°S and 16°S
and along the lower continental slope (>2000 m). The upper slope
deposits reflect high biological production in response to coastal
upwelling, but preservation of organic matter is enhanced by the...
Our view of phytoplankton has historically revolved around their inability to
control their location in space. The term phytoplankton itself underscores this
particular difference between phytoplankton and their sessile terrestrial counterparts.
Yet there are other differences between land plants and the phytoplankton that are
perhaps equally important, beyond this sessile-planktonic...
Carbon dioxide (CO₂) fluxes between the ocean and atmosphere on continental margins are difficult to diagnose because these regions experience large variability over spatial and temporal scales spanning meters to basins and hours to years, respectively. In a global sense, continental margins could represent a significant atmospheric CO₂ sink, equivalent...
The influence of mesoscale ocean eddies on near-surface ocean temperature, surface stress and phytoplankton communities is investigated by collocating numerous satellite measurements along with vertical profiles of oceanic temperature and salinity to the interiors of eddies identified and tracked in altimetric sea surface height maps.
The surface currents associated with...
The ecology of the North Atlantic right whale (Eubalaena glacialis) was examined at three spatial scales during the summer and early fall on their northern feeding grounds. The diving and foraging behavior of right whales was investigated at spatial scales of hundreds to thousands of meters by tagging right whales...
Waves are the primary input of energy in the nearshore region, and together with the currents forced through the transfer of momentum that occurs during the wave breaking process they are the principal mechanism for sediment transport in the nearshore. The basic physics of waves and currents are thought to...
In situ optical measurements of spectral absorption and beam attenuation provide information on the fine scale horizontal and vertical variations in phytoplankton pigments and other measures of phytoplankton photophysiology and ecology in coastal waters. Phytoplankton pigment ratios from discrete sample analyses with High Performance Liquid Chromatography were compared to in...
The mathematical and physical connections between three different ways of quantifying linear predictability in geophysical fluid systems are studied in a series of analytical and numerical models. Normal modes, as they are traditionally formulated in the instabilities theories of geophysical fluid dynamics, characterize the asymptotic development of disturbances to stationary...
Oceanic crust covers nearly 70% of the Earth's surface, of which, the upper,
sediment layer is estimated to harbor substantial microbial biomass. Marine crust;
however, extends several kilometers beyond this surficial layer, and includes the
basalt and gabbro layers. In particular, the basalt layer has high permeabilities which
allows for...
The North Pacific subtropical gyre (NPSG), once considered to be a biological desert due to low primary production (PP) and its associated variability, has been found more productive and variable than previously thought. The environmental conditions controlling this relatively high PP variability are yet to be elucidated, despite important implications...
The longshore variability of the coastal response to hurricanes may be examined within the framework of a storm-impact scaling model that compares spatially-variable beach morphology and fluid forcing. The relative elevations of dune height and storm-induced water levels are used to define three impact regimes (swash, collision, and overwash), within...
The biological transformation of dinitrogen gas (N2) into combined forms(termed N2 fixation) by certain genera of oceanic cyanobacteria represents the largest incoming flux of nitrogen to the global ocean. As such, biological nitrogen fixation
plays a significant role in the regulation of oceanic productivity and the export of
carbon and...
The deglacial behavior of the sub-Arctic North Pacific is poorly constrained, with many published records suffering from limited age control due to extensive post- depositional biogenic carbonate dissolution. Potential alternative dating methods could include the correlation of stable-isotopic and/or paleomagnetic secular variation records to an independently-dated regional template, however no...
This thesis involves the interpretation of gravity and other
potential field anomalies caused by layers of varying thickness. The
partial differential equations of potential field theory are reviewed for
gravitational and magnetic force fields. A similar review is carried
out for steady-state heat transport and diffusion processes. For the
gravitational...
The effects of wind forcing on coastal ocean circulation are studied using a
numerical modeling approach. The first region of interest is on the North Carolina
shelf, where the Coastal Ocean Processes (CoOP) Inner Shelf Study (ISS) took place
during August - November 1994. ISS observations are used to initialize,...
Numerical model and assimilation experiments were conducted in the tropical Pacific Ocean to obtain a better understanding of the processes that control the cold tongue surface mixed layer temperature balance during August 1999 to July 2004. The numerical model was first applied to test two hypotheses (asymmetric background currents and...
The properties and evolution of nonlinear internal waves (NLIWs) depend
upon the background conditions within which waves form, propagate, and dissipate. As a result, the NLIW field on the New Jersey shelf displayed dramatic variability during the Shallow Water 2006 experiment. Wave variability was exhibited by 1) amplitudes that ranged...
Westward transport of water vapor across the Panama Isthmus helps to
maintain the salinity contrast between the Atlantic and Pacific Oceans, important in
thermohaline circulation and global climate. Relatively low sea-surface salinities and a
strong, shallow pycnocline in the eastern Pacific warm pool (EPWP) region near
Central America reflect high...
Small pelagic fishes (SPF), such as anchovies and sardines, are ecologically important due to their large abundance and intermediate trophic position that links plankton production to upper trophic levels. They are also economically important, supporting large fisheries that contribute to one fourth of the world fish landings. Reproductive success in...
By implementing a series of mass-conserving nested high-resolution models down to approximately 1 km resolution that have realistic bathymetry, coastline, wind forcing and river run-off, the winter 1996-1997 shelf flow near Cape Mendocino, California, is simulated and compared with available observations from the Strata Formation on Margins (STRATAFORM) marine geology...
We present a study of the ocean circulation using state of the art numerical and data assimilation techniques. The second chapter of the thesis presents the development and application of generalized inversion to a simple dynamical model of Lake Kinneret. The intent was to develop the necessary tools to implement...
The mesoscale circulation in the Gulf of California is investigated using a numerical model (Princeton Ocean Model). Forced by satellite-derived winds, the circulation in the gulf shows a complex pattern dominated in the southern gulf by multiple eddies. Near the coast and in most of the north gulf, the circulation...
Tropical coral reef ecosystems are very important from both the ecological and economical
points of view. However, they are also particularly fragile, and have been
declining in recent years in most regions of the world, since they are highly susceptible
to anthropogenic stressors operating at global scales (e.g., global warming...
The long-term evolution of Gaussian eddies is studied in an equivalent barotropic model using both linear and nonlinear quasi-geostrophic theory in an attempt to understand westward propagating satellite altimetry tracked mesoscale eddies. By examining both individual eddies and a large basin seeded with eddies, it is shown that long term...
This investigation focuses on gaining a better understanding of the complex relationship between melt generation, source variability and mid-ocean ridge morphology. The approach adopted here uses a variety of geochemical techniques to evaluate the ability of 'global' models to predict regional scale geochemical variability associated with axial depth and axial...
We consider long planetary waves of annual period linearized about a steady, wind-driven subtropical (ST) gyre circulation. The circulation divides the gyre into an eastern zone (EZ) where only the surface layer is in steady motion and a western zone (WZ) where both the surface and the middle layer are...
Modern upwelling conditions and corresponding oceanographic properties are investigated and reconstructed for the Late Quaternary. The oceanographic conditions considered influence diatom ecology and the record of fossil diatom frustules in the sediments.
Diatoms from modern sediments are evaluated as paleoceanographic proxies and transfer functions (TFs) are calibrated using the Imbrie...
Contiential margins on plate boundaries are complex systems with morphologies and characteristics dictated by the interplay of sediment deposition and erosion, tectonic faulting, folding, and strong ground motion generating mass wasting events. With ever increasing advances in high-resolution remote sensing techniques these systems are increasingly becoming illuminated.
A ~120 km...
Influences of tidal and slower (subtidal) oceanic flows over the continental shelf and slope off Oregon are studied using a high-resolution ocean circulation model and comparative model-data analyses. The model is based on the Regional Ocean Modeling System (ROMS), a fully nonlinear, three-dimensional model (using hydrostatic and Boussinesq approximations). The...
Wind-driven coastal upwelling brings subsurface water onto the central-Oregon shelf after the spring transition each year. This cold and salty source water is oxygen-poor, yet above the hypoxic threshold, dissolved oxygen < 1.4 ml l⁻¹. Once on the shelf, dissolved oxygen (DO) concentrations of upwelled near-bottom waters are modified by...
A three-part study was conducted into the impact of physiological and ecological variables on the net isotopic fractionation of hydrogen, α[subscript K₃₇], expressed in C₃₇ alkenones. First, alkenone-producer production, abundance, and export were characterized in the summertime Gulf of California and Eastern Tropical North Pacific using compound-specific, labeled in situ...
Marine sediments contain an abundance of methane that is biologically produced
and plays a significant role in the global carbon cycle. Microbes responsible for the
carbon cycle in marine sediments, and the processes that they carry out, need to be
characterized in order to fully understand the role of this...
This research incorporates geochemical and helium isotopic analyses of Lau Basin volcanic glasses, along with helium isotopic analyses of water column hydrothermal plumes to better understand the processes that control the formation and evolution of this backarc basin. Lavas newly collected from the four southernmost segments of the Valu Fa...