Autonomous buoys were deployed in 2011 in the central Arctic: An Ice-Tethered Profiler (ITP) and Ice Mass Balance (IMB) buoys were deployed in the Makarov basin; a Polar Ocean Profiling System (POPS) and Ice Thickness (Ice-T) buoy were deployed on the Eurasian Basin. The two different sites were approximately 70km...
Modifications of an ocean model are described, as the objective for which the model was used changed to study the kinematics and dynamics of an eastern-boundary poleward undercurrent.
Phytoplankton are a sentinel class of organisms in the marine environment. Through their photosynthetic activity in sunlit waters worldwide, phytoplankton shape the health and productivity of marine ecosystems and impact the global climate. In this work a range of ocean sensing technologies (via ships, surf zone sampling, moorings, gliders, and...
Contiential margins on plate boundaries are complex systems with morphologies and characteristics dictated by the interplay of sediment deposition and erosion, tectonic faulting, folding, and strong ground motion generating mass wasting events. With ever increasing advances in high-resolution remote sensing techniques these systems are increasingly becoming illuminated.
A ~120 km...
Changes in environmental conditions in marine ecosystems could directly or indirectly influence distribution, abundance, settlement, and size at settlement of flatfish. Understanding species-specific and age-specific responses to environmental variability is important for managing commercially important flatfish stocks. Slope-spawning flatfish whose offspring rely on extensive drift from the slope (spawning) to...
Small pelagic fishes (SPF), such as anchovies and sardines, are ecologically important due to their large abundance and intermediate trophic position that links plankton production to upper trophic levels. They are also economically important, supporting large fisheries that contribute to one fourth of the world fish landings. Reproductive success in...
When adult spawning and juvenile settling locations of marine fishes are
geographically separated, their early life history stages must rely on transport and
their own behavior to move them toward suitable habitats for successful recruitment
to the juvenile phase. Variations in climate may reduce the availability of spawning
and juvenile...
Tropical coral reef ecosystems are very important from both the ecological and economical
points of view. However, they are also particularly fragile, and have been
declining in recent years in most regions of the world, since they are highly susceptible
to anthropogenic stressors operating at global scales (e.g., global warming...
Paleoclimate archives have revealed abrupt climate events that are superimposed on more gradual climate changes throughout the last glacial and deglacial periods. The underlying causes of such rapid climate changes are still poorly understood, but the strong expression of these events in northern hemisphere records likely points to climatic mechanisms...
Freshwater provided from river discharge influences the dynamics and circulation of most continental shelves around the world. It has profound effects on the transport and fate of materials and substances originated from rivers and estuaries, as well as on the ocean biogeochemistry and marine ecosystems. The effect of buoyancy forcing...
A three-part study was conducted into the impact of physiological and ecological variables on the net isotopic fractionation of hydrogen, α[subscript K₃₇], expressed in C₃₇ alkenones. First, alkenone-producer production, abundance, and export were characterized in the summertime Gulf of California and Eastern Tropical North Pacific using compound-specific, labeled in situ...
Wind-driven coastal upwelling brings subsurface water onto the central-Oregon shelf after the spring transition each year. This cold and salty source water is oxygen-poor, yet above the hypoxic threshold, dissolved oxygen < 1.4 ml l⁻¹. Once on the shelf, dissolved oxygen (DO) concentrations of upwelled near-bottom waters are modified by...
Antarctic Ice Sheet mass balance and, hence, sea level change is affected by the floating extensions of outlet glaciers and ice streams that take up about 44% of the coastline (Drewry et al., 1982) and are referred to as "ice shelves". Ice sheet mass loss accelerates when these ice shelves...
In order to evaluate the shallow stratigraphy along the southern Cascadia abyssal margin and northern California abyssal plain, CHIRP subbottom profiles capable of imaging individual turbidite beds in the upper tens of meters of the subsurface were collected. Reflectors imaged with the 3.5 kHz CHIRP subbottom data represent turbidite beds...
Quantifying the mass transport through marine sediments, and the geochemical response to such flow with numerical models has become a common and powerful approach for geochemical data interpretation. In this dissertation, I developed and applied transport-reaction models to unravel complex and interdependent reactions involving carbon, sulfur and silica transformations in...
Influences of tidal and slower (subtidal) oceanic flows over the continental shelf and slope off Oregon are studied using a high-resolution ocean circulation model and comparative model-data analyses. The model is based on the Regional Ocean Modeling System (ROMS), a fully nonlinear, three-dimensional model (using hydrostatic and Boussinesq approximations). The...
Analogous to ocean surface waves, waves in the ocean interior also experience steepening, breaking, and dissipation as they approach the coastline. Much less is known about this internal beach. In this work, extensive moored Acoustic Doppler Current Profiler and temperature/salinity data together with optical remote sensing are combined to describe...
Subduction zone earthquake and tsunami hazards affect tens of millions worldwide and the recurrence of these disasters can be evaluated with paleoseismic techniques, because earthquake cycles (and their supercycles) typically span many millennia. In these three chapters, I discuss a suite of analyses I use to evaluate the sedimentary record...
Euphausia pacifica, the North Pacific krill, is a key grazer in the California Current System and an important prey item for consumers such as salmon, seabirds, and whales. As a crucial link between phytoplankton and higher trophic levels, it is essential to understand both the behavior and bioenergetics of this...
The marine ecosystem provides a broad spectrum of services for a wide array of user groups. Such broad use of marine resources often results in use conflicts between ecosystem elements and human interests. To help mitigate these conflicts, the Bayesian Analysis for Spatial Siting (BASS) tool was developed to incorporate...
A new method is introduced for incorporating bathymetric uncertainty into predictions of nearshore and river flows (i.e., unstratified flows primarily forced by pressure and radiation stress gradients). The method involves the use of the ensemble Kalman filter (EnKF) as a parameter estimation scheme, where the parameter to be estimated is...
This paper details a method to compute absolute water velocity profiles from glider-based acoustic Doppler current profiler (ADCP) measurements based on the "shear method" developed for lowered ADCPs. The instrument is a 614-kHz Teledyne RDI ADCP integrated into the body of a Teledyne Webb Research Slocum Glider. Shear is calculated...
The influence of mesoscale ocean eddies on near-surface ocean temperature, surface stress and phytoplankton communities is investigated by collocating numerous satellite measurements along with vertical profiles of oceanic temperature and salinity to the interiors of eddies identified and tracked in altimetric sea surface height maps.
The surface currents associated with...
Understanding and modeling microbial responses and feedbacks to climate change is hampered by a lack of a framework in the pelagic environment by which to link local mechanism to large scale patterns. Where terrestrial ecology draws from landscape theory and practice to address issues of scale, the pelagic seascape concept...
Nearshore hypoxia within the Northern California Current (NCC) system is a seasonal phenomenon caused by coastal upwelling and occurs mainly during late-summer and early fall. The effects of low oxygen levels on fish and invertebrate communities, particularly during early-life history stages, however, are poorly known for this area. I investigated...
Pacific cod (Gadus macrocephalus) is an important species, both economically and ecologically in the Bering Sea and Aleutian Islands (BSAI). However, little is known about its spawning dynamics. To address this knowledge gap, I developed a gross anatomical maturity key for Pacific cod to assess temporal and spatial patterns of...
The rapid increase in atmospheric carbon dioxide (CO₂) over the last 250 years has led to the absorption of approximately 550 billion tons of anthropogenic CO₂ by the global ocean. This oceanic uptake of CO₂ has resulted in decreasing pH and alterations to carbonate chemistry, threatening many ecologically and economically...
The quantification and description of sea surface temperature (SST) is critically important because it can influence the distribution, migration, and invasion of marine species; furthermore, SSTs are expected to be affected by climate change. Recent research indicates that there has been a warming trend in ocean temperatures over the last...
Methane derived authigenic carbonate (MDAC) precipitation occurs within marine sediments as a byproduct of the microbial anaerobic oxidation of methane (AOM). While these carbonates form in chemical and isotopic equilibrium with the fluids from which they precipitate, burial diagenesis and recrystallization can overprint these signals. Plane polarized light (PPL) and...
This study investigated long-term (1961-2008) changes in albacore (Thunnus alalunga) abundance and distribution in relation to local environmental and large-scale climate indices in the Northeastern Pacific using time series and spatial analyses. Prior to the time series analysis, a wavelet analysis was conducted to examine nonrandom patterns of cyclical variability...
Marine sediments contain an abundance of methane that is biologically produced
and plays a significant role in the global carbon cycle. Microbes responsible for the
carbon cycle in marine sediments, and the processes that they carry out, need to be
characterized in order to fully understand the role of this...
Two bloom-detection products were developed for the Oregon coast that describe the relative percent change observed between successive pairs of 8-day chlorophyll-a (CHL) and fluorescence line-height (FLH) products obtained from the MODerate Resolution Imaging Spectroradiometer aboard the Aqua spacecraft (MODIS-Aqua). The CHL[subscript dev] and FLH[subscript dev] products, respectively, were optimized...
Deep-sea bamboo coral (Isidella sp.) SE000901A from the southern Oregon coast (water depth 1048m) provides a high-resolution record of variability of North Pacific Intermediate Water (NPIW) and carbon rain to the sea floor, related to coastal upwelling, from 1808 to 2000AD. Counting of annual layers in magnesium to calcium (Mg/Ca)...
The deglacial behavior of the sub-Arctic North Pacific is poorly constrained, with many published records suffering from limited age control due to extensive post- depositional biogenic carbonate dissolution. Potential alternative dating methods could include the correlation of stable-isotopic and/or paleomagnetic secular variation records to an independently-dated regional template, however no...
Juvenile walleye pollock (Theragra chalcogramma) are one of the primary prey items for bird and mammal predators in the Bering Sea and support a large commercial fishery. An understanding of the environmental factors that determine the horizontal and vertical distribution of juvenile pollock is needed to estimate the effects that...
Small, mountainous river systems have been increasingly studied due to their importance as sources of fluvial sediment and organic matter to the coastal ocean. Thus far, studies of small, mountainous river systems have focused on rivers with very high sediment loads. The well-studied Eel River dispersal system in northern California...
Carbon dioxide (CO₂) fluxes between the ocean and atmosphere on continental margins are difficult to diagnose because these regions experience large variability over spatial and temporal scales spanning meters to basins and hours to years, respectively. In a global sense, continental margins could represent a significant atmospheric CO₂ sink, equivalent...
Hazards threaten coastal communities and ecosystems over a wide range of spatiotemporal scales. One of the most pressing concerns for coastal property owners, decision makers, and researchers is the uncertain role that a changing climate will have on the intensity and frequency of these hazards. The significant uncertainties associated with...
Bi-weekly sampling of zooplankton and environmental parameters was conducted along a cross-shelf transect off the coast of Newport, OR, USA (44.65°N) from 1996 to present. Results have demonstrated the feasibility of using copepod community structure as an early indicator of ecosystem response to seasonal and large scale environmental changes in...
Rates of benthic O₂ exchange are important measurements for determining organic matter remineralization, and can shed light on factors driving biogeochemical processes in coastal environments. Measurement of in situ O₂ consumption and production within permeable sediments, such as those found over ~43% of the Oregon-Washington shelf, has traditionally been done...
The subaerial beach, composed of sand dunes and the foreshore, provides a natural buffer zone between vulnerable land and the dissipation of storm wave energy due to wave breaking. The natural beauty of this region is attractive to people, and as a result, significant investment has been placed in this...
Tide-topography coupling is important for understanding surface-tide energy loss, the intermittency of internal tides, and the cascade of internal-tide energy from large to small scales. Although tide-topography coupling has been observed and modeled for 50 years, the identification of surface and internal tides over arbitrary topography has not been standardized....
This dissertation investigates the dynamics of the tidally modulated outflow from the Columbia River mouth using high resolution measurements of velocity, density and turbulent microstructure. At high tide, flow through the river mouth reverses from flood (onshore) to ebb (offshore). During ebb, buoyant fluid issues from the river mouth and...
Under conditions of fixed N-limitation, as with most oligotrophic systems, the process of biological N₂ fixation (diazotrophy) is favored, provided the necessary trace elements and vitamins are sufficient. Despite the well understood contributions of N₂
fixation in oligotrophic regions, the nutritional and ecological controls of marine diazotrophs have not been...
Phagotrophic protists are major consumers of microbial biomass in aquatic ecosystems. However, biochemical mechanisms underlying prey recognition and phagocytosis by protists are not well understood. We investigated the potential roles of cell signaling mechanisms in chemosensory response to prey, and in capture of prey cells, by a marine ciliate (Uronema...
Instability and turbulence in sheared, salt-fingering favorable stratification are studied
using three-dimensional direct numerical simulations (DNS). Salt-fingering favorable
stratification is gravitationally stable, because the unstable vertical gradient of salinity
is stabilized by temperature (warm, salty over cool, fresh water-masses). Salt-fingering
instability can occur at the interface of these different water-masses....
Small pelagic fish represent a critical trophic link between plankton and large predators in marine upwelling ecosystems such as the California Current System. Populations of these fish are highly variable over time and are characterized by extreme fluctuations in abundance, which have significant ecosystem impacts. The causes driving
this instability...
The copepod Calanus finmarchicus is the most important and biomass dominant mesozooplankter in the temperate-boreal North Atlantic. C. finmarchicus has an overwintering phase, termed diapause, during which it descends to great depths (300-2000m) and is metabolically quiescent for up to ten months. Changes in the currents at depth due to...
Dramatic and ongoing changes pervading the Arctic and subarctic seas over
recent decades have motivated this effort to track and better understand hydrographic
variability using chemical tracers. Particular emphasis has been paid to differentiating
freshwater contributions to upper layers: namely Pacific water, meteoric water, and
sea-ice melt/formation.
Data collected in...
Summertime, wind-driven upwelling off the Oregon coast delivers nutrient rich water to the surface that fuels the autotrophic production of particulate organic carbon (POC). This POC can be transported horizontally by fluid motions and vertically by sinking to the bottom where it can be entrained in the benthic boundary layer...
A Regional Ocean Modeling System (ROMS) application for the coastal region of Kenya and Tanzania (0-10° S, 38.7-46.98° E) was developed with the aim of better resolving the circulation patterns in the coastal region that is poorly represented in global models. The model has a horizontal resolution of 4 km,...
Salmon survival and eventual recruitment success have long been thought to be determined within the first summer following ocean migration. Juvenile growth during this period is largely influenced by ocean conditions such as temperature, prey availability, abundance, and quality. Shifts in these conditions due to climatic perturbations are particularly prevalent...
Sediments of the central Chile margin record changes in ocean circulation and
continental erosion associated with large–scale climate change. Here Antarctic–
influenced Southern Ocean currents flow equatorward, forming a link between the high–
and low–latitude oceans. Part of this link, Antarctic Intermediate Water, is an important
conduit that ventilates South...
In the summer of 2007, a biophysical experiment was conducted to identify physical processes that determine the delivery of invertebrate larvae and juvenile rockfish to rocky intertidal and kelp forest communities in northern Monterey Bay, California. The experiment was sponsored by the Partnership for Interdisciplinary
Studies of Coastal Oceans (PISCO)...
The marine climate of the Galapagos is spatially and seasonally
heterogeneous. A taxonomically comprehensive study of Galapagos zooplankton has
never been done. This study is an initial effort to establish the distribution and
community structure of zooplankton in the Archipelago. I collected zooplankton
samples by vertical tows over the Galapagos...
During four cruises in July and September of 2008 and 2009, the shipboard X-band radar was tuned to detect the modulated bands of surface roughness caused by converging and diverging currents associated with high-frequency nonlinear internal wave (NLIW) packets. The data collected was used to quantify the propagation direction (ϴp),...
At the Costa Rica Dome (CRD), upwelling associated with cyclonic circulation and the presence of a shallow thermocline support a highly productive biological habitat, exploited by marine fauna at several trophic levels. During January 2008, a cruise to the CRD by the R/V Pacific Storm was conducted to relocate blue...
The long-term evolution of Gaussian eddies is studied in an equivalent barotropic model using both linear and nonlinear quasi-geostrophic theory in an attempt to understand westward propagating satellite altimetry tracked mesoscale eddies. By examining both individual eddies and a large basin seeded with eddies, it is shown that long term...
The properties and evolution of nonlinear internal waves (NLIWs) depend
upon the background conditions within which waves form, propagate, and dissipate. As a result, the NLIW field on the New Jersey shelf displayed dramatic variability during the Shallow Water 2006 experiment. Wave variability was exhibited by 1) amplitudes that ranged...
We present a new nitrogen isotope model incorporated into the three-dimensional ocean component of a global Earth System Climate Model designed for millennial timescale simulations. The model includes prognostic tracers for the stable nitrogen isotopes, ¹⁴N and ¹⁵N, in the nitrate (NO₃ˉ), phytoplankton, zooplankton, and detritus variables of the marine...
Greenland halibut (Reinhardtius hippoglossoides) have decreased in the eastern Bering Sea and Aleutian Islands since the 1970s. The reasons behind the poor recruitment are unknown, and important knowledge gaps of the ecology of the early life stages have been identified. The objectives of thesis research were (1) to examine geographic...
The ecological interaction between the largest coastal predator, the gray whale (Eschrichtius robustus) and the most abundant shallow water marcrozooplanktonic prey, mysids, were examined in a poorly-understood predator-prey relationship along the central Oregon coast. From 2002-2008, 83 seasonal gray whales were identified. These whales returned each year around Memorial Day...
The distribution of barite (BaSO₄) in marine sediments has long been studied as a proxy for paleoproductivity. While pure barite is known to be a stable mineral in oxic sediments, it is also known that variations in the Sr/Ba ratio influence its solubility and liability during early diagenesis. To extract...
We examine the interactions and feedbacks between bathymetry, waves, currents, and
sediment transport. The first two pro jects focus on the use of remote sensing techniques
to expand our knowledge of the nearshore. Due to the plethora of snap-shot data that is
available from satellites and their distribution via Google...
Recent works have investigated use of the hydrogen isotopic composition of C₃₇ alkenones (δD[subscript K37s]), lipid biomarkers of certain haptophyte microalgae, as an independent paleosalinity proxy. I discuss herein the factors impeding such an application and identify the potential alternative use of δD[subscript K37s] measurements as a proxy for non-thermal,...
We investigate, theoretically and experimentally, the problem of modeling depth-integrated (2DH) surf zone circulation on an alongshore-nonuniform natural beach, with waves approaching from an arbitrary angle. An approximate theoretical model is developed, which captures the important effect of advection in the alongshore dynamics, and shows that a nondimensional parameter Re[subscript]s...
A benthic microbial fuel cell (BMFC) is an electrochemical device that
generates current from the redox gradient at the sediment-water interface. Early
prototypes had anodes buried in anoxic sediments and cathodes in overlying water.
The BMFCs described in this dissertation are based on a chamber design that enables
the use...
The local and remote sources of variability of the South Atlantic Ocean are investigated using a set of numerical experiments and satellite data. A global, eddy-permitting, numerical simulation is analyzed to investigate the dynamical links between the Antarctic Circumpolar Current (ACC) and the Malvinas Current (MC). The model results indicate...
This thesis investigates the influence of early diagenesis on trace metal and
molybdenum isotope behavior in marine and lacustrine environments. Chapter one is a
synthesis of previous research in all the marine environments investigated, providing an
essential geochemical context for interpreting the observed behavior of Mo in these settings.
Chapter...
The inherent and apparent optical properties of different ocean regimes are the basis for all optical remote sensing of the ocean. Ecological information derived from remote sensors therefore relies on having a detailed understanding of how particulate backscattering and absorption contribute to the bulk optical signal. The absorption
characteristics of...
Experiments were conducted with two strains of the coccolithophorid Emiliania huxleyi. Previous experiments with CCMP1742 and 372 at a light intensity of 60 µEin/m²-s showed that during five-day periods of continuous darkness, strain 1742 was taking up nitrate from the media while strain 372 was not. The nitrate uptake in...
Oceanic crust covers nearly 70% of the Earth's surface, of which, the upper,
sediment layer is estimated to harbor substantial microbial biomass. Marine crust;
however, extends several kilometers beyond this surficial layer, and includes the
basalt and gabbro layers. In particular, the basalt layer has high permeabilities which
allows for...
Diatoms are a ubiquitous group of plankton responsible for 20-40% of oceanic
primary production, and a higher fraction of organic matter export to the ocean
interior. Diatoms actively transport dissolved inorganic silicon into their cells, and
through the process of silicification (i.e. biogenic silica production) they build tough
and intricate...
Two Autonomous Underwater Vehicle Gliders have alternated continuous sampling of a 45-nautical mile transect line (the Newport Hydrographic Line) across the Oregon continental shelf since April, 2006. Strong currents (>25cm/s) push the gliders off their trajectories as they survey this transect line, preventing them from sampling the historically occupied stations...
In eastern boundary current upwelling ecosystems, mesoscale circulation features such as eddies and upwelling filaments play a prominent role in the transfer of water and the associated plankton from the productive nearshore to the oligotrophic deep sea. The relationship between mesoscale circulation, zooplankton distributions, and the across-shelf transport of coastal...
This study was designed to identify and characterize areas of concentrated use and diving behavior of blue whales (Balaenoptera musculus) off the California coast. During the summer of 2004, thirteen blue whales were tagged with implantable Telonics ST-15 Argos satellite-monitored radio tags and five were tagged with Telonics ST-21 Argos...
This research incorporates geochemical and helium isotopic analyses of Lau Basin volcanic glasses, along with helium isotopic analyses of water column hydrothermal plumes to better understand the processes that control the formation and evolution of this backarc basin. Lavas newly collected from the four southernmost segments of the Valu Fa...
Wave-induced circulation is the defining characteristic of the nearshore. Within this region, the constant feedback cycle between incoming waves, wave-generated currents, and the mobile sediment bed is responsible for the evolution of complex patterns in nearshore and beach morphology. Central to our understanding of this system is knowledge of the...
Waves are the primary input of energy in the nearshore region, and together with the currents forced through the transfer of momentum that occurs during the wave breaking process they are the principal mechanism for sediment transport in the nearshore. The basic physics of waves and currents are thought to...
Interactions between surface winds and meanders in mid-latitude sea surface temperature
(SST) fronts with horizontal length scales of 100-1000 km are investigated
from satellite observations and numerical simulations. Observations from the Sea-
Winds scatterometer on the QuikSCAT satellite show that the magnitude, direction,
curl, and divergence of the surface wind...
This investigation focuses on gaining a better understanding of the complex relationship between melt generation, source variability and mid-ocean ridge morphology. The approach adopted here uses a variety of geochemical techniques to evaluate the ability of 'global' models to predict regional scale geochemical variability associated with axial depth and axial...
This research focuses on the development of new techniques to explore terrestrial-ocean climate linkages along the Pacific Northwest-northeast Pacific Ocean margin. This is done by investigating river response to climate change and by unraveling this history preserved in continental margin sediments. A significant component of this work centers on developing...
Inner-shelf circulation and mechanisms of across-shelf transport of water masses were examined using seven years of observations collected by the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) program, a long-term monitoring effort along the central Oregon coast. Since 1998, moored velocity and hydrographic measurements have been obtained during the...
An autonomous, in-situ instrument was developed to detect dissolved copper in seawater, suitable for deployment on time scales from weeks to months. A commercially available in-situ nitrate analyzer (YSI 9600) was adapted to measure copper (II) in seawater by chemiluminescence. Modifications included construction of a photomultiplier (PMT) based detector and...
Nares Strait is one of three main passages of the Canadian Archipelago that
channels freshwater from the Arctic Ocean to the North Atlantic. There are very few
observations regarding the role of this region on the present day Arctic freshwater budget,
and even less regarding the changes in freshwater fluxes...
Plate boundaries are commonly regions of complex, diffuse deformation with
the motion across the boundary accommodated by numerous structural systems, rather
than being narrow, discrete zones of deformation. One such boundary occurs where
the North American plate makes contact with Juan de Fuca, Gorda, and Pacific plates
along the west...
The biological transformation of dinitrogen gas (N2) into combined forms(termed N2 fixation) by certain genera of oceanic cyanobacteria represents the largest incoming flux of nitrogen to the global ocean. As such, biological nitrogen fixation
plays a significant role in the regulation of oceanic productivity and the export of
carbon and...
The mathematical and physical connections between three different ways of quantifying linear predictability in geophysical fluid systems are studied in a series of analytical and numerical models. Normal modes, as they are traditionally formulated in the instabilities theories of geophysical fluid dynamics, characterize the asymptotic development of disturbances to stationary...
Our view of phytoplankton has historically revolved around their inability to
control their location in space. The term phytoplankton itself underscores this
particular difference between phytoplankton and their sessile terrestrial counterparts.
Yet there are other differences between land plants and the phytoplankton that are
perhaps equally important, beyond this sessile-planktonic...
Experiments were designed to answer key questions about diatom-derived organic matter cycling (i.e., production and degradation) in coastal systems. Dissolved organic matter (DOM) production was examined in axenic batch cultures of five diatom species. Dissolved organic carbon (DOC) release rates varied between species, but were significantly higher for all species...
Modern upwelling conditions and corresponding oceanographic properties are investigated and reconstructed for the Late Quaternary. The oceanographic conditions considered influence diatom ecology and the record of fossil diatom frustules in the sediments.
Diatoms from modern sediments are evaluated as paleoceanographic proxies and transfer functions (TFs) are calibrated using the Imbrie...
The North Pacific subtropical gyre (NPSG), once considered to be a biological desert due to low primary production (PP) and its associated variability, has been found more productive and variable than previously thought. The environmental conditions controlling this relatively high PP variability are yet to be elucidated, despite important implications...
Tropical instability waves (TIWs) are prominent seasonal features in both the equatorial Pacific and Atlantic Oceans. This work quantifies their role in modulating the distributions of nutrients and phytoplankton biomass. Using an eight year record of biannual ship observations along the Tropical Atmosphere Ocean (TAO) buoy array, cruise sections crossing...
The microbial loop plays a crucial role in remineralization of organic matter and fuels recycled production in the aquatic environment. The capability of microbes to utilize particular compounds can be examined through their ectoenzyme (found outside the cell) activities using fluorogenic substrate analogs. These catalysts hydrolyze polymers otherwise too large...
The effects of alongshore variability in topography (banks and capes) and spatial variability in the wind forcing, including the wind-stress curl, on coastal ocean circulation are studied using a combination of observations and model simulations. Satellite sea surface temperature observations are used to describe the seasonal evolution of temperature fronts...
Marine sediments exceptionally rich in organic carbon, known as black shales, occur globally but intermittently in well correlated Cretaceous successions. The presence of black shales indicates that sporadic, ocean-wide interruption of normal respiration of marine organic matter during oxygen-deficient conditions has occurred. Submarine volcanism on a massive scale, related to...
Large barite (BaSO4) structures mark cold seeps in the southern San Clemente Basin. Barium flux to San Clemente sediments is two to three times greater than fluxes measured in surrounding California Borderland basins. Analyses of sediment trap material, water column samples, sediments and pore water indicate that expected bariumbearing mineral...
The longshore variability of the coastal response to hurricanes may be examined within the framework of a storm-impact scaling model that compares spatially-variable beach morphology and fluid forcing. The relative elevations of dune height and storm-induced water levels are used to define three impact regimes (swash, collision, and overwash), within...
We present a study of the ocean circulation using state of the art numerical and data assimilation techniques. The second chapter of the thesis presents the development and application of generalized inversion to a simple dynamical model of Lake Kinneret. The intent was to develop the necessary tools to implement...
Thermohaline interleaving is an important mechanism for laterally fluxing salt, heat, and nutrients between oceanic water masses. Interleaving is driven by a release of potential energy resulting from the vastly differing diffusivities of heat and salt in seawater. The flows are composed of stacked intrusions that flux more buoyant and...