Little work has been conducted regarding the net returns of forest lands. The Ricardian model is ripe with potential to estimate the effects of climate on net returns to forestry.
Multiple linear regression allows each climate variable to measure its effect of net returns with the assumption of all other...
The synergetic interplay between the removal of saturated methyl esters and the addition of deoxygenated fatty acids on depressing the cloud point temperature of biodiesel was investigated in this study. Canola biodiesel was produced in batch as a standard with a cloud point of 1.37 +/- 6.3°C. Saturated methyl esters...
This study compares the requirements of three forest certification systems, the Sustainable Forestry Institute (SFI), the Forest Stewardship Council (FSC), and the International Organization for Standardization (ISO), with the 2005 McDonald-Dunn Forest Plan Revision. The analysis was done with a series of matrices comparing the requirements of SFI and FSC...
Seasonality is defined as a change in mood and behavior with the seasons. Research shows there is a possible connection between vitamin D levels and mood (Murphy & Wagner, 2008; Lansdowne & Provost, 1998). Given that vitamin D is produced when skin is exposed to sunlight and varies with sun...
Dibenzo[def,p]chrysene (DBC) is a highly potent, but less prevalent, environmental carcinogen belonging to a class of compounds known as Polycyclic Aromatic Hydrocarbons (PAHs). They are highly ubiquitous and arise as a byproduct of natural and anthropogenic combustion processes. Previous studies have documented carcinogenic effects upon in utero exposure of PAHs....
Spotted wing drosophila, Drosophila suzukii, is a recently introduced, invasive pest in Oregon. It oviposits in near-mature and mature fruit, and thus is an important concern for the small fruit industry. A crop consultant observed that mature raspberry fruit with D. suzukii larvae do not show symptoms of molds as...
Obtaining high-resolution structures of biological macromolecules has become one of the biggest challenges in the scientific world. Dr. Wei Kong’s lab is currently working to overcome the limitations of current structure resolution techniques, such as x-ray crystallography and nuclear magnetic resonance spectroscopy. Kong’s group hopes to develop a new protein...
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Colin Johnson, Committee Member, representing Department of Biochemistry and Biophysics
The “why” of any situation is one of the most important questions to ask. Inventors have ideas every day. Some ideas are the brilliant ideas that lead to a better tomorrow. To protect these ideas, inventors turn to patents, a governmental grant of the right to stop others, for a...
The ferlin protein family regulates membrane trafficking events for a wide range of cellular and physiological processes in eukaryotic organisms. Structurally, ferlins are distinguished by containing five to seven C2 domains with a single-pass transmembrane domain at the C-terminus. In mammals, there are 6 ferlin genes, including Fer1L6, which confer...
As laws regarding medical and recreational cannabis use are changing across the United States, one must begin to understand the effects among individuals with chronic pain. Specifically, it is unclear how legalization may change their use of marijuana and opioids to self-medicate or for recreational use. To address these questions,...
Competitive exclusion is a key concept in ecology describing the exclusion of one species by another from access to a limited resource. Competitive interactions between chipmunk species in the Great Basin, documented by James Brown in 1970, are often used as a textbook example of competitive exclusion. Whether competitive interactions...
Otoferlin is a protein that is essential in the process of hearing. Mutations in otoferlin are associated with profound recessive deafness. The long-term goal of the Johnson lab is to understand how otoferlin contributes to hearing and why certain mutations result in deafness. This project sought to characterize the difference...
After a joint injury, arthrogenic muscle inhibition (AMI) leads to decreased neuromuscular control and strength, as neural inhibition prevents volitional activation of the entire motor neuron pool. Traditional rehabilitation techniques such as strength training are unable to effectively reduce AMI and there is a need to identify interventions that can...
Ferlins are a family of calcium-sensitive proteins involved in fusion and fission membrane trafficking events. There are six ferlin members: dysferlin, otoferlin, myoferlin, Fer1L4, Fer1L5, and Fer1L6. Previous research shows the first three ferlins play a pathophysiological role in humans, while the other three remain uncharacterized. Fer1L6 is one of...
Fer1L6 is an uncharacterized member of the ferlin family of proteins, a group of large, calcium sensitive proteins with emerging roles in vesicle trafficking and various disease states. The presence of Fer1L6 has been identified within the C2C12 cell line of mouse skeletal muscle. To determine the protein’s subcellular location...
Background: Certain knee movements place the anterior cruciate ligament (ACL) at risk of injury. These injuries commonly affect athletes especially at the end of events. The purpose of this study was to determine the effects of exhaustive exercise on frontal plane hip and knee mechanics during two tasks in order...
Background: The capability of an individual to produce force rapidly is important for performance of sporting activities and to stabilize a joint to protect against injury. Rate of torque development (RTD) and contractile impulse (CI) may be more effective than peak torque in assessing rapid torque production. The relationship between...
Background: The ability to produce rapid muscle force and joint torque is important for performance in sports, injury prevention and rehabilitation, and balance recovery. One way to measure rapid torque production is rate of torque development (RTD), which is the slope of the torque-time curve. Interventions aimed at increasing RTD...
The Missoula Floods occurred approximately fifteen thousand to thirteen thousand years ago during the last ice age. The floods occurred when waters held back by a finger of the Purcell Ice Lobe gave way allowing water which covered present day Missoula, Montana to inundate areas of Idaho, Washington, and Oregon....
Embryonic development, where organs and major structures begin to develop, requires precise coordination of numerous gene regulatory pathways. Fendrr is an long non-coding RNA (lncRNA) that plays a role in regulating gene expression in mesodermal tissues during early embryonic development in mouse. The lateral plate mesoderm (LPM) is an earlier...
All life depends on the reliable translation of RNA to protein according to complex interactions between translation machinery and RNA sequence features. While ribosomal occupancy and codon frequencies vary across coding regions, well-established metrics for computing coding potential of RNA do not capture such positional dependence. Here, we investigate position-dependent...
Academic performance of student athletes is an of interest topic in the current climate of rising university athletics expenses. This project academic population of Oregon State University student athletes with that of the general undergraduate population using grade point averages (GPA). Samples were compared using team, gender, college, and sport...
Seasonal Affective Disorder (SAD) is a mood disorder that is characterized by depressive symptoms that onset and remit at the same times each year. Whereas few people (about 1%) experience problems severe enough to be labeled SAD, many people (estimates range from 30%-90%) may experience mild to moderate changes in...
Previous literature consistently demonstrates a link between binge drinking and sexual assault among college students. State alcohol control policies, particularly tax policies, are established as important predictors of college binge drinking but have not been examined in relation to sexual assault. This study used merged data on student demographics and...
The dynein molecule is a peculiar motor protein recognized for its unique stepping behavior. Sometimes it steps forwards. Other times it steps backwards. It has even been observed to occasionally shuffle by beginning a step with the same domain many times in row. These motions make dynein an interesting object...
OSU Extension provides important educational services to members of the agricultural community. Programming options can be guided by needs assessment surveys, which are used to determine gaps in knowledge and understanding for communities. The objective of this study was to develop and execute a survey to gather information on: 1)...
While breast milk is considered the best nourishment for newborns, they have a lowered ability to digest the fat rich liquid due to decreased lipase secretion for the first few months after birth. To offset this, breast milk itself contains Bile Salt-Stimulated Lipase (BSSL) which significantly heightens fat digestion ability....
Lanthanide (Ln) based molecular complexes have shown great potential as Lewis acid catalysts for the activation of small molecules. Despite the wealth of structural versatility and high catalytic activity of these complexes, they often lack selectivity and recyclability. This hinders their potential for use in large-scale industrial applications where waste...
Miniature satellites called cubesats have been gaining increasing popularity in
both academic and private spaceflight ventures. NASA's Jet Propulsion Laboratory
has recently been accepting design proposals for a cubesat mission to Europa, where
solar and battery power would be inadequate power sources. In this thesis, a
radioisotope powered cubesat was...
We are developing a flavin-containing (Fmo) knock-out mouse for Fmo2 that will be utilized to elucidate the role of active human FMO isoform 2 (FMO2.1) in xenobiotic metabolism and toxicity. Since FMO2 is primarily expressed in lung this will provide information on how 27% of African-Americans and 5% of Hispanics...
While seemingly harmless, stereotypes can play a significant role in prejudice and discrimination. In two studies, we examined stereotypes of Asian American women and how they may vary with different clothing types. We used a mixed factorial design with a sample of college students from a U.S. university. In the...
With cannabis use increasing globally, it is important to understand its acute and chronic impacts on human physiology and behavior. It is proposed that cannabis use is linked to impairments in emotion processing, and brain regions that underlie these processes. The purpose of this review paper is to provide the...
I construct and examine the properties of Lie and Clifford algebras which are used to describe certain types of particles. These algebras are then related to the traditional theory of division algebras. Quaternions are applied to these algebras and their properties are exploited to model physical properties of particles. The...
Despite the many advances in biotechnology and biomedical engineering, the need for long term organ and tissue storage remains among the unsolved problems in the field. Researchers are investigating several possible solutions to the issue that aim to maintain the function and integrity of the biological tissues during storage and...
Knowledge concerning trade wind cumulus, one of the most dominant cloud types
on the planet, has become increasingly important when considering global issues such as climate change due to their potential influence on the Earth’s energy budget. In this project, using data from the Rain in Cumulus over the Ocean...
Understanding the relationships between land use, water quality, and groundwater is crucial for ecological, economic, and water management decisions. This study aims to provide a comprehensive analysis of the land use activities and hydrologic processes influencing the water quality of Oak Creek watershed. Objectives of this study were: 1) to...
The data retrieved from gt;momic sequencing techniques provides the raw information required to infer the basis of mutations and their resulting phenotypes, wherein plant ontologies can be utilized in annotating said phenotypes using a common, shared vocabulary. By relating mutant genes of similar phenotypes both within and between plant species,...
Autism Spectrum Disorder (ASD) is described as a developmental disability characterized by impairments in social interaction, communication, and repetitive or restricted movements. It has been shown that as children with ASD age, their cognitive and social skills improve with time, and physical activity has been linked with improving aspects of...
Locating sources of radio signals can be useful in many applications. From pointing antennas at nearby radio towers to fox hunting, being able to determine the relative location or direction to a radio transmitter can be very useful. Generally, it is necessary to have the current GPS locations of both...
An understanding of oppression and privilege would improve engineering climates and encourage individuals with marginalized identities to stay engaged in engineering spaces. Currently there are quantitative tools to assess cultural competencies, but none that measure understandings of power relationships. This project aims to create a qualitative assessment instrument to measure...
Semiconductors serve an integral role in our technologies today. However, with new advancements in ultra-fast electronics, we are approaching the fundamental speed limits of traditional silicon-based semiconductors. Silicon-based semiconductors typically exhibit photocarrier dynamics in nanosecond timescales. Transition metal dichalcogenides (TMDs) are 2D materials shown to exhibit photocarrier dynamics in picosecond...
Rhizopogon salebrosus is an abundant ectomycorrhizal fungus common throughout Western North America that forms mutualistic partnerships with Pinus species. Studied for its systematics, use in sapling nurseries, post-fire seedling establishment, and unique evolutionary history, R. salebrosus holds many secrets within its genome. This thesis aims to characterize the mating system,...
The forebody wake effect (FWE) is important to consider when designing parachute systems because it can affect parachute performance. Parachutes work by altering the aerodynamic properties of an attached forebody to control a descent. The FWE can reduce parachute drag, causing the system to descend faster than desired. This drag...
Essential oils have numerous chemical and therapeutic applications. Some oil extraction methods, including steam distillation, require a large energy input. An alternative technique with a lower energy demand is the extraction of oils using supercritical liquid carbon dioxide (CO2), which extracts essential oils with minimal environmental impact. While this often...
The motor protein dynein is responsible for cellular processes such as axonal transport and cell division by delivering vital information along the microtubule track. A failed delivery can cause severe damage to the cell’s functionality and lead to neurological diseases. Despite dynein’s rich history in cellular research, the mechanism of...
Over the last ten years, clinical, pre-clinical and animal studies have shown associations between the microbiota and neurological functions. Recent work by the scientific community on the gut-microbiome-brain axis have revealed that gut dysbiosis and specific microbial taxa are associated with a myriad of neurological conditions, such as autism spectrum...
Paper microfluidic devices are capable of processing fluids using capillary flow in materials that are lower cost than the standard materials used in microfluidics. Due to the low cost of their fabrication and minimal requirements for instrumentation, paper microfluidic devices are ideal for use in low-resource settings. They have the...
Through examination of empirical evidence on individuals with Asperger’s Syndrome and related Pervasive Developmental Disorders, the author attempts to provide an overview of the social deficiencies associated with these disorders. Points of primary concern are the social deficiencies in developing competence in experience-sharing and demonstrating empathy, especially in how they...
Objective: In 2018, suicide was the leading cause of death for individuals between the ages of 10-24 in Oregon (OHA, 2019) and was the second leading cause of death for this age range in 2020 (OHA, 2021). In 2019, 12% of Black high school students reported a suicide attempt in...
Objective: Alcohol and cannabis use and co-use among college students is prevalent in the United States (Bravo et al., 2021). These substances have been linked to poor collegiate academic performance in past research. The present study examines varying levels of single-substance alcohol use and alcohol and cannabis co-use in their...
Polycyclic aromatic hydrocarbons (PAHs) are a class of contaminants ubiquitous in the environment and result from the incomplete combustion of fossil fuels. Many PAHs have been identified as procarcinogenic, and are metabolized to form DNA adducts; however, other mechanisms also may contribute to toxicity and help explain differences in toxicity...
The electrical conductivity data of ceramic material at high temperatures can be useful in the application of modeling, solid oxide fuel cell (SOFC), and magnetohydrodynamic (MHD). The existing data is considerably lacking at extreme temperatures. Our research focuses on bridging this gap by reporting the electrical conductivity measurements of sets...
The discovery of novel compounds with antibacterial properties continues to be critically important.3 One potential source of such compounds is the cryptic genome of fungi known to produce biologically active molecules. A kmt6 mutant of the cereal pathogen Fusarium graminearum was previously developed through a histone H3 lysine 27 methyltransferase...
Currently multi-canonical, and grand canonical Monte Carlo simulations exist, but do not always give all of the necessary information of the system. When using a 1-D (only changing in one variable) broad histogram Monte Carlo method a user would need to run a range of simulations in order to get...
This study aimed to explore the relationship between urinary cortisol levels and proximity-seeking behavior in shelter cats and the impact of socialization programs on these two factors. A Spearman’s correlation test found no correlation between cortisol levels and proximity-seeking behavior in shelter cats. Fisher’s 2x2 tests confirmed that the changes...
Cannabis use rates have been escalating in recent years within the United States. The effects of cannabis on motivation and effort-based decision making have been of increased interest. Amotivational syndrome is a term used to refer to a lack of motivation, passive personality, non-productive behavior, and lowered educational attainment due...
Hatcheries are used to produce salmon to augment the number of fish available for harvest, and to supplement wild populations that may be threatened with extinction. Although traditional hatchery rearing methods can produce many fish, they can pose risk to wild populations because they tend to produce salmon with lower...
Dibenzo[def,p]chrysene (DBC) is a highly potent, but less prevalent, environmental carcinogen belonging to a class of compounds known as Polycyclic Aromatic Hydrocarbons (PAHs). They are highly ubiquitous and arise as a byproduct of natural and anthropogenic combustion processes. Previous studies have documented carcinogenic effects upon in utero exposure of PAHs....
Two policies for allocating individual assets from a pool of assets to incoming requests were contrasted within the context of replacement analysis. Assets within a pool are considered similar in the service they provide, but may differ in age and cumulative usage. The two policies considered for allocating assets to...
Coded metrics that compare representations of structures within the human body to evaluate their similarity are considered useful for planning radiation therapy on cancer targets. However, existing metrics fail to take into account the dose of radiation that will be received by both the target, and surrounding non-target tissue, during...
Dynein is a motor protein which transports cargo along tracks inside the cell. Like related motor proteins kinesin and myosin, dynein uses cellular energy to take steps with its two foot domains. Unlike kinesin or myosin, dynein’s stepping pattern is highly varied: it can take steps between zero and 60nm...
In communities impacted by climate disasters, institutions largely determine the distribution of outcomes within a population. This research aims to examine the role of institutions in differential outcomes for displaced communities impacted by the 2020 Labor Day Wildfires in the Santiam Canyon and the Rogue Valley. Using semi-structured interviews of...
Background: Individuals rapidly infer character traits and behaviors through the process of facial perception. Perceptions of trustworthiness, accurate or not, completed by authorities in the criminal justice system may have implications for individuals suspected of crimes, including harsher or longer sentencing decisions. Objective: The present study concerned how the presence...
Vitamin D sufficiency supports cardiovascular health and lower cancer risk. Rates of vitamin D insufficiency vary by racial/ethnic group, in part because skin pigment limits sunlight penetration. However race/ethnicity is an unreliable marker of vitamin D deficiency, given individual differences in skin pigment, or phototype, and other characteristics. Clarifying associations...
We construct the contact value approximation (CVA) for the pair distribution function,
g(²)(r₁, r₂), for an inhomogeneous hard sphere fluid. The CVA is an average of two radial
distribution functions, which each take as input the distance between the particles, |r₂ −r₁|,
and the average value of the radial distribution...
Different models show the effects of environmental decoherence on a quantum system
due to various environments of interest. One important quantity within these models is
the decoherence time, which tells us how quickly environments wash away the coherence of
local measurements. We can describe this effect as the quantum system...
We identify and develop efficient Monte Carlo methods for determining thermodynamic properties of the square-well fluid in order to test square-well density functional theories near the critical point. Previous works have developed generic so-called histogram methods for collecting statistics on low energy system states, but little or no literature exists...
The relationship between the index of refraction and the porosity of a material is that the index decreases with respect to the porosity. This property can be used to change the index of refraction of films which allows control of the reflection of the material. This is important because being...
Through the use of daily online surveys, this study investigated the weekly trends associated with college binge drinking. It also investigated the relationship between personality risk factors and binge drinking. Personality risk factors were assessed using the TCI measures of novelty seeking and harm avoidance, and the ATQ measure of...
Solutions to Einstein's equations are usually found by considering ideal, simplified models. However, if the real world always matched ideal physics models, then farmers would milk black and white spheres. To combat this, Regge calculus was developed as a numerical approximation scheme for general relativity. In Regge calculus curved manifolds...
Technology is constantly co-evolving with science to produce simple and effective tools that address the needs of researchers. Cost and time effective point-of-care devices are valuable for sample collection and analysis, particularly in medicine and environmental health and safety. Digital microfluidic (DMF) technology provides a possible solution. This study explores...
Glycomacropeptide (GMP) is a bioactive peptide found in the dairy product whey, along with whey protein isolate (WPI). Past studies have shown that digested GMP retains bioactivity in rodent guts. This study tested whether GMP or GMP-derived peptides or whey protein or whey protein-derived peptides inhibit pro-inflammatory cytokines. THP-1 cells...
Loop quantum gravity is a framework for quantizing general relativity which imposes a discrete structure on space. In exploring the structure of loop quantum gravity, researchers have investigated loop quantum cosmology, a toy model with reduced degrees of freedom while maintaining a discrete space. Polymer quantum mechanics is a framework...
Landfill leachate is a complex wastewater that contains high levels of ammonium (often over 250 ppm) and trace heavy metals (usually under 0.2 ppm). Microalgae have been shown to inexpensively and effectively treat wastewaters containing high loads of organics and nutrients, as well as adsorb metal ions. This thesis focuses...
Base-pairing interaction are the fundamental blocks of an RNA structure. With increased ability to determine the structure of RNA molecules, an accurate and informative way of classifying these interactions would help to study RNA structure at many levels. Apart from the well-known complementary base pairs and wobble pairs, other interactions...
Standard quantum mechanics makes foundational assumptions to describe the measurement process. Upon interaction with a “classical measurement apparatus”, a quantum system is subjected to postulated “state collapse” dynamics. We show that framing measurement around state collapse and ill-defined classical observers leads to interpretational issues, and artificially limits the scope of...
Background. Flourishing is negatively related with depression, but has been proposed as a separate axis and an independent aspect of overall mental health. One factor that has been shown to affect both depression and flourishing is racial discrimination. This study hypothesizes that, in young undergraduate women of color, discrimination experiences...
This project calculates the value of β for ice particles based on wavelength dependent values of their refractive and absorptive indices. β is the ratio of the force due to radiation to the force due to gravity acting on a particle in the solar system. This parameter can later be...
Mental health issues such as depression are increasingly prevalent in college students. However, research on disparities in mental health problems in students of color in college has been limited. In the present study, we used the Healthy Minds Study (HMS) data collected on mental health of college students from 2018-2019...
The National Pesticide Information Center (NPIC) is a cooperative agreement between Oregon State University and the U.S. Environmental Protection Agency that offers science-based information about pesticides and related topics to the general public, medical personnel, applicators, researchers, and regulators. The Herbicide Properties Tool project is the creation of an updated...
In this paper I present the results of Monte Carlo simulations for a soft sphere fluid with a Weeks-Chandler-Anderson (WCA) pair potential. The results are compared to Soft Fundamental Measure Theory (SFMT) results obtained by our research group. One of the research group’s goals was to show that our SFMT...
Loop quantum gravity is a theoretical framework which aims to quantize general relativity. One of the unique aspects of this theory is that it imposes a discrete structure on space-time. One toy model of loop quantum gravity is loop quantum cosmology, which maintains the idea of a discrete spatial structure...
This thesis analyzes different aspects of the Oregon foster care system. It does this first by looking at racial/ethnic disparities across counties. Then it analyzes the relationship between foster care rates and child poverty rates, childhood food insecurity rates, free and reduced lunch eligibility rates, and unemployment rates for Oregon’s...
Brownian motion is the movement of a particle in a fluid resulting from collisions with surrounding molecules. It has modern applications in simulating fluid dynamics and the motion of proteins in biophysics. Brownian motion simulations generally evolve the initial state by applying Newton’s second law to every particle. These simulations...
Profile Hidden Markov Models utilize the information stored in a multiple sequence alignment such as its residues and conserved regions to assign probabilities at each column. This indicates areas in the sequences where similar functionality is observed. These probability weights are then combined to assign a sequence score, which is...
Dynein is a motor protein which transports cargo along tracks inside the cell. Like related motor proteins kinesin and myosin, dynein uses cellular energy to take steps with its two foot domains. Unlike kinesin or myosin, dynein’s stepping pattern is highly varied: it can take steps between zero and 60nm...