In the last twenty years, human trafficking has gained attention in government agendas and media coverage, while anti-trafficking projects have burgeoned worldwide. Anti-trafficking efforts, however, have almost exclusively addressed the issue of sex trafficking with a focus on rescuing women, while overlooking other types of exploitation. This is noteworthy, given...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Caspian terns (Hydroprogne caspia) and double-crested cormorants
(Phalacrocorax auritus) nest in large colonies on East Sand Island in the Columbia
River estuary, the largest known colonies for the two species in the world. Both
species of piscivorous colonial waterbirds have been identified as predators with a
significant impact on the...
Soils contain the largest pool of carbon that is actively cycling on human timescales, leading many to view soils as a natural climate solution with multiple co-benefits. The field of soil science is rapidly evolving, but without a unified understanding of soil carbon dynamics. This dissertation leverages two distinct long-term...
Swiss needle cast (SNC) is a foliage disease of Douglas-fir caused by Nothophaeocryptopus gaeumannii, an Ascomycete fungus (Mycosphaerellaceae) that causes growth reductions in Douglas-fir plantations across the Pacific Northwest. Epidemiology of the fungus is generally well known in plantation trees, but the relationship between disease expression and foliage nutrition and...
Thorough understanding of the mechanisms controlling the temperature structure in the surface mixed layer of the ocean and, in particular, accurate values of sea surface temperature are critical for properly parameterizing air-sea heat exchange and quantifying the amount of heat redistributed below the surface. It is however difficult to obtain...
Small mountainous watersheds are disproportionate sources of land-derived particulate organic matter (POM) to long-term sinks like lake bottoms and the ocean. As such, these ecosystems are an essential component of the global carbon cycle. The burial of POM in lacustrine and marine sediments contributes to the drawdown of atmospheric CO2...
I compare the seasonal abundance variation, population dynamics, fecundity, egg hatching mechanism and success, and apostome ciliate parasites of the euphausiids Euphausia pac?fica and Thysanoessa spinfera from the Oregon coast, USA. Community structure and nearshore distributions were examined from bi-weekly oceanographic surveys (1970-1972). This region has a strong cross-shelf change...
Quantification and comparison of morphological changes over the last ~300 y in Oregon salt marshes provide valuable insights into the tectonic, hydroclimatic, and anthropogenic processes shaping this important intertidal zone. Understanding of the rates and drivers of salt marsh change contextualizes intertidal habitats within the sediment routing system (i.e., source...
Deep learning has recently revolutionized robot perception in many canonical robotic applications, such as autonomous driving. However, a similar transformation has yet to occur in more harsh environments including underwater and underground. This is due in part to the difficulty in deploying robots in these environments, which lack large real...