The words we use to define our lives are often determined by the way we render any given moment. Every instance of writing is a moment of remembering, and a non-fiction essay gives the author free rein to unravel an instance, paint a portrait of what time has already come...
A purpose built facility was designed, built and operated at the Advanced Thermal Hydraulic Research Laboratory, which is located at Oregon State University. This facility was used to heat a plate of Alloy 304 Stainless Steel to 800 °C and then cool the plate using a fine mist of water...
The red tree vole (Arborimus longicaudus) is an arboreal Arvicoline rodent endemic to conifer dominated forests of western Oregon and northwestern California. While commonly associated with old forests, often inhabiting stands over 80 years old, tree voles have also been found in young forests between 20 and 80 years old....
The Line Integral Convolution (LIC) is a mainstay of flow visualization. It is, however, computationally intensive, which limits its interactivity. Also, when used to view three-dimensional (3D) vector fields, the resulting images are dense and cluttered, making it difficult to perceive the flow on the interior parts of the field....
Previous reports indicate the presence of multiple CYP1A sequences in rainbow
trout, but their functional differences are unknown. This report describes the cloning and partial characterization of four trout CYP1A cDNAs, which are given the tentative
designations CYP1A1v2, v3, v4, and v5. Comparison among these four and three
previously reported...
Wildfire exclusion over the past century or more has resulted in extensive fuel accumulations throughout much of the West that combined with recent climatic patterns have increased the frequency of relatively uncommon, large, high-severity wildfires. Forest restoration treatments intended to alter landscape-level fire disturbance patterns can be difficult to implement...
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John Duff Bailey
Wildfire exclusion over the past century or more has resulted in
Forests in the western United States have changed drastically over the past 150 years given a long history of utilization (harvest and grazing) and associated fire exclusion. These actions have altered the composition and structure of these forests as well as affected ecosystem function. Current policies for federal land management...
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John D. Bailey
Forests in the western United States have changed drastically over the past
Severe wildfires are increasing in the western United States, impacting vegetation structure, and in turn, forest regeneration conditions. These wildfires are also raising a substantial amount of scientific and management concern regarding the resilience of forested ecosystems, or the ability of the ecosystem to return to a pre-fire condition. This...
This study introduces a layered model for rendering human teeth. Human teeth exhibit complex light interaction due to their layered structure. While the lighting responses of teeth have been studied in the dental industry for the production of realistic looking dentures, to our knowledge this is the first study of...
This thesis presents an efficient computational voxelization approach that utilizes the graphics pipeline. Our approach is hybrid in that it performs a precise gap-free computational voxelization, employs fixed-function components of the GPU, and utilizes the stages of the graphics pipeline to improve parallelism. This approach makes use of the latest...
Dedicated to the preservation and promotion of many of the nation’s most threatened and endangered species, the W.L. Finley National Wildlife Refuge is highly invested in the management of some of the last remaining upland prairies once prevalent throughout Oregon's Willamette Valley. More than a century of land fragmentation, fire...
Bale Mountains National Park (BMNP) is currently considered the most important conservation area in Ethiopia. BMNP was established over forty years ago to protect Ethiopian endemic fauna and to preserve an array of habitat types including Afroalpine, Afromontane, and the second largest natural humid forest (Harenna forest) left in Ethiopia....
Indole-3-carbinol (I3C) inhibits chemically induced tumor
formation in rodents and rainbow trout. This study examines the
effect of I3C and its analog, indole-3-acetonitrile (I3N) on
xenobiotic-metabolizing enzyme systems. The modulation of these enzyme
systems have been shown to have significant effects on the
interaction of chemical carcinogens and cellular constituents....
Forest managers are challenged to restore resilience to forests with an elevated risk of stand-replacing fire by using mechanical thinning and prescribed fire. Implementation of these methods can be constrained by mandates to conserve sensitive wildlife species like the Pacific marten (Martes caurina). Martens avoid simplified forest stands created by...
Invasive vegetation control studies traditionally aim to control existing populations as well as limit future spread of the species. However, little additional attention has been dedicated to aiding native communities to recover and reestablish. One prominent example of a studied invasive is Brachypodium sylvaticum (Huds.) P. Beauv. (false brome), a...
We took the back-propagation algorithms of Werbos for recurrent and feed-forward neural networks and implemented them on machines with graphics processing units (GPU). The parallelism of these units gave our implementations a 10 to 100 fold increase in speed. For nets with less than 20 neurons the machine performed faster...
As the nonstop advancement of graphics hardware continues, new features are being added to the graphics pipeline on a regular basis. One of these advancements is called Pixel Synchronization, which allows a graphics programmer more power with certain types of data structures that may be accessed by multiple shader units...
The Intel Xeon Phi is a relative newcomer to the scientific computing scene. In the recent years, GPUs have been used extensively for mathematical simulations. The Xeon Phi is Intel’s response to the use of these cards. Like the GPU, it is highly parallelizable but can be programmed like a...
The constant increase in marine traffic requires a strategy to manage safety. The automatic identification system (AIS) was developed as a navigation safety device for ships in the 1990s. AIS is intended, primarily, to allow ships to view marine traffic in their area and to be seen by that traffic....
Oftentimes in visualization, the goal of using volume datasets is not just to visualize them but also to analyze and compare them. In order to compare the two volumes, we cannot take all the voxels into consideration. The size of a typical volume data set is quite large (maybe a...
”Until relatively recently, mankind was not aware that there was a separable binocular depth sense. Through the ages, people like Euclid and Leonardo understood that we see different images of the world with each eye. But it was Wheatstone who in 1838 explained to the world, with his stereoscope and...
Quaking aspen (Populus tremuloides Michx.) is known to be a widely distributed, shade-intolerant and short-lived hardwood found in both seral, even-aged and stable, uneven aged stands. There have been reports of extensive aspen mortality, crown thinning, and branch dieback across North America that have been linked to the occurrence of...
This project addresses the problems of manually placing facial landmarks on a portrait and finding a fast way to warp the annotated image of a face. While there are many approaches to automatically find facial landmarks, most of them provide insufficient results in uncontrolled environments. Thus I introduce a method...
3D datasets acquire great importance in the context of medical imaging. In this thesis we survey and enhance solutions to problems inherently associated with 3D datasets-processing time,noise and visualization. Efforts include development of a tool kit to provide a multi-threaded processing platform to cut processing time, produce real time visualization...
The dream of ubiquitous virtual reality (VR) tools has been a powerful presence in pop culture since before the turn of the century. But for all of its charm, VR applications are few and far between due to the high cost of hardware setups and cumbersome form factor. This project...
Graphics hardware in mobile devices has become more powerful, allowing rendering techniques such as ray-cast volume rendering to be done at interactive rates. This increase of performance provides desktop capabilities combined with the portability of a tablet. Volumes can demand a high amount of memory in order to be loaded...
Downward flow opposing mixed convection conditions have been studied using the FLUENT CFD code. This work was comprised of two primary objectives. The first was to study core channel flow reversal susceptibility in the Gas Reactor Test Section (GRTS) at low flow conditions. The second objective was the development of...
The licensing of novel nuclear reactor power plant designs requires extensive research and testing. A significant portion of this work is dedicated to the design and operation of scaled-down testing facilities that emulate various plant conditions. The data gathered from these test facilities is used to compare to predictive models....
Transport in a binary stochastic media has been an area of interest for many applications over the past three decades. Many different methods have been attempted, most based on the Levermore-Pomraning coupled transport model. However, this method has never been able to correctly solve problems where a large amount of...
In broiler chickens, hepatic lipid metabolism plays a significant role in whole body and muscle fatty acid (FA) incorporation. Flax seed is a rich source of α-linolenic acid and can be used to increase n-3 FA in poultry meat. Previous studies have shown that flax seed in combination with carbohydrase...
The objective of this paper is to demonstrate a method for mechanically characterizing a 25 μm thick elastoviscoplastic hemodialysis membrane and for quantifying the force required to use that membrane in compression sealing. First, methods are developed for mechanically characterizing the thin elastoviscoplastic membrane. Then, a finite element model is...
Almost 600,000 people in the United States were treated for End Stage Renal Disease in 2010. A majority of those people received hemodialysis from central medical facilities. It has been reported a better treatment option for these patients would be realized if the patients had more frequent hemodialysis treatments. A...
More than 1.2 million people worldwide require regular hemodialysis therapy to treat end stage renal failure. In the United States alone, there are 300,000 patients and the National Kidney Foundation predicts that this number will double in the next 10 years. Currently most dialysis patients receive treatment at a dialysis...
Microchannel process technology (MPT) components are chemical unit operations which exploit highly-parallel arrays of microchannels to process large fluid volumes for portable and distributed applications. Microchannel heat exchangers (MCHXs) have demonstrated 3 to 5 times higher heat fluxes when compared to conventional heat exchangers resulting in proportionate reductions in size...
Intra- and interplant movement and dispersal of the predator mites Neoseiulus californicus (McGregor) and Neoseiulus fallacis (Garman) were studied on both lima bean (Phaseolus lunatus L.) and apple (Malus pumila Miller) branch plant systems that were seeded with excess numbers of the spider mite Tetranychus urticae Koch. Individuals of either...
This thesis describes an investigation of the natural products chemistry of two fungal species of the genus Tolypocladium. Natural products are small organic molecules that are considered non-essential for cell growth and reproduction, and thus part of secondary metabolism. Chemical profiling of these secondary metabolites using a combination of high-performance...
Application Stores, such as the iTunes App Store, give developers access to their users’ complaints and requests in the form of application reviews. However, little is known about how developers are responding to application reviews. Without such knowledge developers, users, Application Stores, and researchers could make incorrect assumptions. To address...
Student problem behavior continues to be a primary concern in schools and, as resources decrease and greater burden is placed upon teachers, schools are pursuing better ways to mange student behavior. Researchers have continually found that when correctly implemented, Positive Behavior Supports (PBS) is an effective system for mitigating problem...
A study was initiated in 1961 to characterize seral plant
communities in a part of the Cedar Creek drainage in the Tillamook
Burn. Stratification of vegetation into ecological units was a necessary
first step in conifer-animal damage studies supported by the
Oregon State Game Commission.
Reconnaissance information was recorded in...
As ornamental container nurseries face diminishing water allocations, many are looking to automated irrigation solutions to increase their water application efficiency. This thesis presents the findings of a study conducted at a commercial container nursery to determine 1) whether a capacitance or load cell sensor was better suited for monitoring...
Declines in wild salmonid (Oncorhynchus spp.) populations in the Columbia River basin have resulted in managers identifying that avian predation on juvenile salmonids is an important limiting factor for salmonid recovery. Caspian Terns (Hydroprogne caspia), particularly those nesting in the Columbia River estuary, were identified as key avian predators that...
"Cotton fur" (CF) in mink (Mustela vison) is characterized
by lack of pigment in the underfur of dark mink and is part of a
syndrome including hypochromic, microcytic anemia and substandard
growth, resulting from an iron deficiency. Such symptoms
are produced by feeding rations containing raw Pacific hake
(Merluccius productus),...
The neuroendocrine system of the gut plays a significant role in regulating intestinal motor and sensory functions, as well as modulating inflammation in the intestine. The intestinal mucosa is the dominant site of serotonin (5HT) synthesis in mammals, with more than 95% of the intestinal 5HT being present in the...
CisCis-Dichloroethylene (ciscis-DCE), 1,1,1-Trichloroethane (1,1,1-TCA), and 1,4-Dioxane (1,4-D) are chlorinated solvents used as solvents and degreasers in industrial cleaning agents that have become common groundwater contaminants. To develop an effective treatment method for these compounds, polyvinyl alcohol (PVA) and sodium alginate (SA) hydrogel beads were co-entrappcapsulated with Rhodococcus rhodochrous Strain ATCC...
Bacterial aggregation is a strategy employed by many pathogens to establish infection. Mycobacterium avium subsp. hominissuis (MAH) undergoes a phenotypic change, microaggregation, when exposed to the respiratory epithelium. This aggregation is an important step in the pathogenesis of the infection, laying the foundation for biofilm formation. We therefore compared how...
Forested landscapes in the Pacific Northwest have changed drastically in the last Century with large-scale wildfires, and increased extent and frequency of commercial timber harvests. Thus, landscapes once dominated by older forest cover types became a matrix of younger forests with patches of older forests dispersed throughout. These younger forests...
Dimethylbenz (a) anthracene (EMBA), a carcinogen that requires
metabolic activation to produce active metabolites capable of
binding to DNA, has been studied in the trout and other fish.
Polycyclic aromatic hydrocarbons (PAH) are of importance as they
are ubiquitous in the environment and their carcinogenic effects
in fish from contaminated...
Historically, between 40-60% of the Coast Range of Oregon was comprised of
structurally diverse, old forests initiated by disturbances of various spatial scales
ranging from thousands of acres (large fires) to the size of a single tree (windthrow).
The predominant regeneration method of the past several decades, however, has been...
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John D. Bailey
Historically, between 40-60% of the Coast Range of Oregon was comprised of
In rodent models as well as in fish models there are significant
species differences in the susceptibility toward aflatoxin B₁ (AFB₁)
carcinogenesis. Mouse is less susceptible toward AFB₁ carcinogenesis
than rat. Researchers have come to the conclusion that the lower
susceptibility of mice is not a result of less effective...
Wildland fires are an increasingly extensive, expensive, and frequent occurrence in dry forests of the western United States. Fuel reduction treatments are designed to reduce extreme fire behavior, promote resilient forest structure, and facilitate fire control efforts. Although there is widespread recognition that repeated treatments are needed to maintain desired...
Ponderosa pine (Pinus ponderosa) and lodgepole pine (Pinus contorta var. murrayana) forests of south-central Oregon have been extensively researched over the last century. However, little information has been reported on overstory composition and stand structure shifts associated with fire exclusion within inter-mixed ponderosa pine and lodgepole pine stands of the...
Land management practices in much of the western US that included wildland fire suppression have led to greater fuel loads than has been typical of historical fire regimes. In response to the increased wildland fire risk, “restoration” has emerged as a forest management goal. Restoration involves removal of uncharacteristic amounts...
Reducing future fire severity is a proposed ecological benefit of salvage logging following wildfire disturbance. Considerable debate continues over the ability of such management practices to achieve this objective given limited understanding of coarse woody detritus (CWD) dynamics, fuel bed alterations, and post-fire vegetative growth. The objective of this study...
The Metolius Research Natural Area (RNA), located 29 km northwest of Sisters, Oregon, was originally established in 1931 to maintain a ponderosa pine (Pinus ponderosa Dougl. Ex Laws) and dry, mixed-conifer forest with the aim to meet objectives of preserving natural conditions, providing for research opportunities, and preserving gene pools...
As a way to improve safety and economics, one area of research and commercialization of new nuclear power plants has focused on the development of small modular reactors (SMRs). NuScale Power has developed a 50 MWe natural convection cooling SMR coupled with a regenerative Rankine cycle. Current estimates place the...
Branched covering spaces are a mathematical concept which originates from complex analysis and topology and has found applications in tensor field topology and geometry re-meshing. Given a manifold surface and an N-way rotational symmetry field, a branched covering space is a manifold surface that has an N-to-1 map to the...
Deep mixing events in the ocean’s surface layer act as physical drivers of carbon export by detraining dissolved and particulate organic matter, including surface phytoplankton communities, to depth. Once removed from the sunlit surface ocean environment, phytoplankton accumulation rates are dependent on the relative contributions of loss processes, such as...
Seafood is one of the most diverse and highly traded natural resources worldwide. Widespread evidence of increased seafood fraud and IUU fishing has placed enormous pressure on industry and governments to determine the authenticity, safety, and sustainability of seafood. The recently established US National Ocean Council has addressed several gaps...
The purpose of this study was to understand the vulnerability and adaptive capacity of shellfish stakeholders in the Pacific Northwest who are adapting to ocean acidification (OA). This study developed a geovisualization tool of existing environmental data for assessing species-specific risk profiles to OA (based on their exposure and sensitivity),...
Automatic music transcription (AMT) is the task, given an acoustic representation of music, to recover a symbolic notation of the written notes expressed by the sound. Transcribing music with multiple notes sounding simultaneously is difficult for both humans and machines. Much existing work on AMT has focused on suitable acoustic...
Digital image correlation (DIC) uses pairs of images, one in a reference state and one after in situ manipulation of the object, to measure full-field displacements and strains by tracking the motion of small image subsets. Subset selection is always a crucial part of DIC technique as it has a...
This thesis presents an experimental study of radial porosity in a manually filled cylindrical container with glass spheres. The symmetric distribution of bead diameter allowed for normalization of container properties and porosity models. The aspect ratio of the container was approximately 3.9, with tube-to-particle-diameter ratio λ ≈ 24.6 and height-to-particle-diameter...
Neotropical characiform fishes form one of the most diverse freshwater ichthyofauna in the world. Knowledge of evolutionary processes that generated and maintain the immense characiform lineage and morphological diversity is still poorly understood. When did characiform lineages diversify? How have major geological and environmental changes affected diversification? Why are some...
Oregon State University has recently conducted a complete core conversion analysis as part of the Reduced Enrichment for Research and Test Reactors Pprogram. The goals of the thermal hydraulic analyses were to calculate natural circulation flow rates, coolant temperatures and fuel temperatures as a function of core power for both...
The High Temperature Test Facility (HTTF) is an electrically heated, scaled model of a Modular High Temperature Gas Reactor (MHTGR). Five experiments were conducted to study Depressurized Conduction Cool-Down phenomena stemming from a Double-Ended Guillotine Break (DEGB). After a DEGB, the reactor pressure vessel would depressurize until the pressures are...
In a Modular High Temperature Gas Reactor (MHTGR), the Depressurized Conduction Cooldown (DCC) event can be separated into three distinct stages: 1) depressurization, 2) air ingress and, 3) natural circulation. During normal operations, the HTGR utilizes forced convection to move the helium coolant through the reactor core. Thus, during normal...
The United States (US) Department of Energy (DOE) has identified the pebble-bed reactor as a high priority for US research with the end goal of licensing a pebble-bed reactor (PBR) for operation in the United States. Before this can be accomplished significant research must be done regarding the safety of...
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Brian G. Woods
The United States (US) Department of Energy (DOE) has identified the pebble
A modified slide-dip bioassay was used to survey and establish
baseline resistance levels in Psylla pyricola Foerster from
western Oregon orchards to four pesticides. Orchards selected in the
Hood River, Rogue River and Willamette Valleys spanned a wide range of
environmental and management conditions. During the study period of
1982-1983,...
A direct numerical simulation of advection-diffusion in a sinusoidal tube was
carried out using the commercial finite-volume code STAR-CD. The Reynolds
numbers varied from Re = 0.1 to Re = 14.5. At the larger Reynolds numbers,
steady-state eddies formed in the diverging sections and significantly influenced
the macroscale dispersion. Long...
Sodium cooled nuclear reactors are being considered for the next generation of nuclear power plants to provide clean electricity to the world. To prove the safety of these reactors, the fuel must be shown to safely handle large neutron fluxes that cause a spike in the thermal output of the...
Micro energy and chemical systems (MECS) are microfluidic systems where energy and chemical processes can be intensified by decreasing the characteristic length. This project focused on bulk fluid processing using MECS technology to intensify the mass transport of a dialyzer. The objective of this project was to
design a model...
Forest managers of public lands in western Oregon and Washington have become increasingly interested in creating additional conifer cohorts in young, even-aged, second-growth Douglas-fir stands. The purpose of our research was to assess the establishment, survival, and growth of naturally-regenerated and underplanted conifers 10-13 years after overstory thinning and understory...
This thesis examines the Schultz Fire as a case study to explain the complex history of fire suppression management in America’s forests, and to gain further understanding of how management practices have affected the increase in fire severity levels and how forests respond to such a disturbance. The thesis objectives...
A one-sixth scaled facility was constructed at Oregon State University to determine
the pressure losses around Westinghouse's AP1000 Passive Containment
Cooling System. An explanation of the AP1000 Passive Containment Cooling System
is given. This study examined the pressure loss and loss coefficient around the
180 degree turn of the Passive...
It is necessary to evaluate and compare the characteristics of
various methods of accessing data-files in order to utilize economically
both the hardware and the software (Space and Time) supported
by the digital on-line system. The purpose of this paper is to
describe and evaluate the structure and use of...
Currently, little work has been performed studying energy consumption in hop kilning. This thesis explores drying with an alternative drying schedule that extends the initially elevated drying temperature currently used by growers and examines its impact on drying time and energy use. Extending the time of the initially elevated drying...
The life history, temperature, humidity, and feeding requirements of the
phytoseiid predator mite, Typhlodromus americanus Chant and Yoshida-Shaul were
tested in the laboratory. Occurance of the mite in the field during different times of the
year was investigated as well. Effects of temperature and humidity on egg hatch, the
feeding...
Fiber reinforced polymers have gained considerable attention due to their wide range of applications, leading to significative concerns for end-of-life recyclability and disposal. Natural fibers and recycled carbon fibers, coupled with thermoplastic matrices can provide a sustainable and environmentally friendly alternative to traditional materials.
This study focused on experimental materials...
Structure-forming invertebrates belong to a polyphyletic group of primarily sessile and sedentary megafauna that can significantly enhance the complexity of physical habitats. A number of these organisms, including cold-water corals and sponges, are known to be slow growing and vulnerable to physical disturbance. In addition, as filter feeders, these invertebrates...
Jerking, which we defined as a pronounced and often repeated lunging of the entire body, was studied in larvae among seven species of phytoseiid mites, and in the nymphal stages of Neoseiulus fallacis (Garman). This behavior was observed in all active immature stages of N. fallacis, and in larvae of...
Diverse pastures containing multiple species help extend the grazing season and reduce the reliance on one or two species to meet all the nutritional requirements of livestock. Planting pasture species in spatially separated adjacent strips can increase the proportion of pasture plants with certain agronomic and nutritional attributes such as...
Local material damage that occurs within cellular solids, such as polymer foams and trabecular bone, and precedes local fractures of the cell struts or walls is called micro-damage. The accumulation of micro-damage within cellular solids is often undesirable, although it is thought to be vital to the development and health...
Photovoltaic (PV) cells have long been an attractive alternative for the consumption of fossil fuels but current manufacturing practices suffer from poor energy efficiency, large carbon footprints, low material utilization, high processing temperatures and high solvent usage. A critical step in PV production is the deposition of CdS as a...
Managing riparian areas in the dry forests of the intermountain west for diverse public values can create conflict, potentially limiting social acceptance in landscape-scale restoration projects. This thesis examined accelerated landscape-scale restoration as part of a broader shift toward ecosystem management on national forestland, which incorporates social values into forest...
FishXing (fish crossing), a computer aided stream crossing culvert model designed to analyze fish passage through culverts was compared with results of an Oregon Department of Forestry fish passage monitoring report. FishXing was created at Humboldt State University through sponsorship from the US Forest Service, USDA, Stream Team, Six Rivers...
Asymbiotic N fixation in leaf litter in the Northwest was assayed by acetylene reduction. Annual N input measured by periodic sampling in a young Willamette Valley Douglas-fir plantation at Adair, Oregon was 1.08 +_.13 kg/ha. Using different calculating methods, six other annual
estimates at the Adair site ranged from 0...
Hydrogen is an increasingly attractive low-carbon energy carrier for a variety of stationary and mobile applications. Currently, the vast majority of hydrogen in the United States is produced via the energy intensive steam reforming of natural gas. The cost and carbon emissions associated with hydrogen production can be reduced by...
Heating, ventilation, and air conditioning systems represent nearly half of building energy usage in the United States. Recent building regulations requiring increased air turnover within buildings will result in even greater air conditioning usage. To alleviate these concerns, membrane-based heat-and-moisture exchangers known as energy recovery ventilators have been developed to...
Microchannel high temperature recuperators have the advantage of higher heat transfer coefficients and lower size and weight than traditional high temperature recuperators. However, the industrial application of microchannel recuperators are restricted by the high cost of photochemical machining and diffusion bonding. The objective of this paper is to introduce a...
The objective of this study is to investigate the dispersion of solute matter introduced into a fully developed laminar flow in a circular capillary tube under preasymptotic regimes. For this purpose, we have used the method of volume averaging to upscale microscale balance equations for the case of diffusion-convection transport...
