Index Catalog // ScholarsArchive@OSU

In Vivo Quantification Reveals Extensive Natural Variation in Mitochondrial Form and Function in Caenorhabditis briggsae

Creator:: Hicks, Kiley A., Howe, Dana K., Leung, Aubrey, Denver, Dee R., and Estes, Suzanne
Abstract:: In We have analyzed natural variation in mitochondrial form and function among a set of Caenorhabditis briggsae isolates known to harbor mitochondrial DNA structural variation in the form of a heteroplasmic nad5 gene deletion (nad5 Delta) that correlates negatively with organismal fitness. We performed in vivo quantification of 24 mitochondrial...
Resource Type:: Article
Full Text:: Natural Variation in Mitochondrial Form and Function in Caenorhabditis briggsae Kiley A. Hicks1, Dana K

Catching the Right Wave: Evaluating Wave Energy Resources and Potential Compatibility with Existing Marine and Coastal Uses

Creator:: Kim, Choong-Ki, Toft, Jodie E., Papenfus, Michael, Verutes, Gregory, Guerry, Anne D., Ruckelshaus, Marry H., Arkema, Katie K., Guannel, Gregory, Wood, Spencer A., Bernhardt, Joanna R., Tallis, Heather, Plummer, Mark L., Halpern, Benjamin S., Pinsky, Malin L., Beck, Michael W., Chan, Francis, Chan, Kai M. A., Levin, Phil S., and Polasky, Stephen
Abstract:: Many hope that ocean waves will be a source for clean, safe, reliable and affordable energy, yet wave energy conversion facilities may affect marine ecosystems through a variety of mechanisms, including competition with other human uses. We developed a decision-support tool to assist siting wave energy facilities, which allows the...
Resource Type:: Article
Full Text:: *, Jodie E. Toft1, Michael Papenfus1,3, Gregory Verutes1, Anne D. Guerry1, Marry H. Ruckelshaus1, Katie K

The Level of Residual Dispersion Variation and the Power of Differential Expression Tests for RNA-Seq Data

Creator:: Mi, Gu and Di, Yanming
Abstract:: RNA-Sequencing (RNA-Seq) has been widely adopted for quantifying gene expression changes in comparative transcriptome analysis. For detecting differentially expressed genes, a variety of statistical methods based on the negative binomial (NB) distribution have been proposed. These methods differ in the ways they handle the NB nuisance parameters (i.e., the dispersion...
Resource Type:: Article
Full Text:: - tifying true differential expression using the various methods under realistic assumptions about NB

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

Creator:: Peterson, G. Jack, Pressé, Steve, Peterson, Kristin S., and Dill, Ken A.
Abstract:: We model the evolution of eukaryotic protein-protein interaction (PPI) networks. In our model, PPI networks evolve by two known biological mechanisms: (1) Gene duplication, which is followed by rapid diversification of duplicate interactions. (2) Neofunctionalization, in which a mutation leads to a new interaction with some other protein. Since many...
Resource Type:: Article
Full Text:: trajectory ends when the model network has grown to have the same total number of links, K , as found in

Avian Species Richness in Relation to Intensive Forest Management Practices in Early Seral Tree Plantations

Creator:: Jones, Jay E., Kroll, Andrew J., Giovanini, Jack, Duke, Steven D., Ellis, Tana M., and Betts, Matthew G.
Abstract:: •Background: Managers of landscapes dedicated to forest commodity production require information about how practices influence biological diversity. Individual species and communities may be threatened if management practices truncate or simplify forest age classes that are essential for reproduction and survival. For instance, the degradation and loss of complex diverse forest...
Resource Type:: Article
Full Text:: breeding species in our study. We let zi,j denote true occupancy status, in which zi,j = 1 if species i

Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage

Creator:: Bonito, Gregory, Smith, Matthew E., Nowak, Michael, Healy, Rosanne A., Guevara, Gonzalo, Cazares, Efren, Kinoshita, Akihiko, Nouhra, Eduardo R., Domınguez, Laura S., Tedersoo, Leho, Murat, Claude, Wang, Yun, Arroyo Moreno, Baldomero, Pfister, Donald H., Nara, Kazuhide, Zambonelli, Alessandra, Trappe, James M., and Vilgalys, Rytas
Abstract:: Truffles have evolved from epigeous (aboveground) ancestors in nearly every major lineage of fleshy fungi. Because accelerated rates of morphological evolution accompany the transition to the truffle form, closely related epigeous ancestors remain unknown for most truffle lineages. This is the case for the quintessential truffle genus Tuber, which includes...
Resource Type:: Article
Full Text:: hypothesized to be a transitional form between epigeous and hypogeous fruiting habits [11]. There are no true

Tapeworm Eggs in a 270 Million-Year-Old Shark Coprolite

Creator:: Dentzien-Dias, Paula C., Poinar, George, Jr., de Figueiredo, Ana Emilia Q., Pacheco, Ana Carolina L., Horn, Bruno L. D., and Schultz, Cesar L.
Abstract:: Remains of parasites in vertebrates are rare from the Mesozoic and Paleozoic. Once most parasites that live in - or pass through - the gastrointestinal tract of vertebrates, fossil feces (coprolites) or even intestinal contents (enterolites) can eventually preserve their remains. Here we announce the discovery of a spiral shark...
Resource Type:: Article
Full Text:: Parasitolo- gica 45: 47–52. 6. Cavia JN, Reyda FB (2005) Eucestoda (true tapeworms). In: Rohde K editor

Genetic Diversity and Population Parameters of Sea Otters, Enhydra lutris, before Fur Trade Extirpation from 1741–1911

Creator:: Larson, Shawn, Jameson, Ron, Etnier, Michael, Jones, Terry, and Hall, Roberta
Abstract:: All existing sea otter, Enhydra lutris, populations have suffered at least one historic population bottleneck stemming from the fur trade extirpations of the eighteenth and nineteenth centuries. We examined genetic variation, gene flow, and population structure at five microsatellite loci in samples from five pre-fur trade populations throughout the sea...
Resource Type:: Article
Full Text:: program calculates the likely number of populations (K) and also assigns individuals to populations

Frequent Alteration of the Tumor Suppressor Gene APC in Sporadic Canine Colorectal Tumors

Creator:: Youmans, Lydia, Taylor, Cynthia, Shin, Edwin, Harrell, Adrienne, Ellis, Angela E., Seguin, Bernard, Ji, Xinglai, and Zhao, Shaying
Abstract:: Sporadic canine colorectal cancers (CRCs) should make excellent models for studying the corresponding human cancers. To molecularly characterize canine CRC, we investigated exonic sequence mutations of adenomatous polyposis coli (APC), the best known tumor suppressor gene of human CRC, in 23 sporadic canine colorectal tumors, including 8 adenomas and 15...
Resource Type:: Article
Full Text:: mutations of APC [16–19,29–32]. To investigate if these are also true in dogs, we investigated APC in 23

Circumpolar Diversity and Geographic Differentiation of mtDNA in the Critically Endangered Antarctic Blue Whale (Balaenoptera musculus intermedia)

Creator:: Sremba, Angela L., Hancock-Hanser, Brittany, Branch, Trevor A., LeDuc, Rick L., and Baker, C. Scott
Abstract:: The Antarctic blue whale (Balaenoptera musculus intermedia) was hunted to near extinction between 1904 and 1972, declining from an estimated initial abundance of more than 250,000 to fewer than 400. Here, we describe mtDNA control region diversity and geographic differentiation in the surviving population of the Antarctic blue whale, using...
Resource Type:: Article
Full Text:: (samples) k p(ID) n (individuals) HWE (p-value) FST (p) Ref. GT575 198 8 0.164 145 0.848 ,0.001 0.195 [64

ScholarsArchive@OSU

In Vivo Quantification Reveals Extensive Natural Variation in Mitochondrial Form and Function in Caenorhabditis briggsae

Catching the Right Wave: Evaluating Wave Energy Resources and Potential Compatibility with Existing Marine and Coastal Uses

The Level of Residual Dispersion Variation and the Power of Differential Expression Tests for RNA-Seq Data

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

Avian Species Richness in Relation to Intensive Forest Management Practices in Early Seral Tree Plantations

Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage

Tapeworm Eggs in a 270 Million-Year-Old Shark Coprolite

Genetic Diversity and Population Parameters of Sea Otters, Enhydra lutris, before Fur Trade Extirpation from 1741–1911

Frequent Alteration of the Tumor Suppressor Gene APC in Sporadic Canine Colorectal Tumors

Circumpolar Diversity and Geographic Differentiation of mtDNA in the Critically Endangered Antarctic Blue Whale (Balaenoptera musculus intermedia)

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