Index Catalog // ScholarsArchive@OSU

Water, water, everywhere : Defining and assessing data sharing in academia

Creator:: Van Tuyl, Steven and Whitmire, Amanda L.
Abstract:: Sharing of research data has begun to gain traction in many areas of the sciences in the past few years because of changing expectations from the scientific community, funding agencies, and academic journals. National Science Foundation (NSF) requirements for a data management plan (DMP) went into effect in 2011, with...
Resource Type:: Article
Full Text:: Digital Scholarship and Services, University Libraries, Oregon State University

Characteristics of Settling Coral Reef Fish Are Related to Recruitment Timing and Success

Creator:: Rankin, Tauna L. and Sponaugle, Su
Abstract:: Many marine populations exhibit high variability in the recruitment of young into the population. While environmental cycles and oceanography explain some patterns of replenishment, the role of other growth-related processes in influencing settlement and recruitment is less clear. Examination of a 65-mo. time series of recruitment of a common coral...
Resource Type:: Article
Full Text:: , Oregon State University, Hatfield Marine Science Center, Newport, Oregon, United States of America

Accelerated Identification of Proteins by Mass Spectrometry by Employing Covalent Pre-Gel Staining with Uniblue A

Creator:: Mata-Gomez, Marco A., Yasui, Matthew T., Guerrero-Rangel, Armando, Valdes-Rodrıguez, Silvia, and Winkler, Robert
Abstract:: Background: The identification of proteins by mass spectrometry is a standard method in biopharmaceutical quality control and biochemical research. Prior to identification by mass spectrometry, proteins are usually pre-separated by electrophoresis. However, current protein staining and de-staining protocols are tedious and time consuming, and therefore prolong the sample preparation time...
Resource Type:: Article
Full Text:: School of Chemical, Biological and Environmental Engineering, Oregon State University, Corvallis, Oregon

Mapping Atmospheric Moisture Climatologies across the Conterminous United States

Creator:: Daly, Christopher, Smith, Joseph I., and Olson, Keith V.
Abstract:: Spatial climate datasets of 1981–2010 long-term mean monthly average dew point and minimum and maximum vapor pressure deficit were developed for the conterminous United States at 30-arcsec (~800m) resolution. Interpolation of long-term averages (twelve monthly values per variable) was performed using PRISM (Parameter-elevation Relationships on Independent Slopes Model). Surface stations...
Resource Type:: Article
Full Text:: Alliance for Computational Science and Engineering, Oregon State University, Corvallis, Oregon, United

Prey Patch Patterns Predict Habitat Use by Top Marine Predators with Diverse Foraging Strategies

Creator:: Benoit-Bird, Kelly J., Battaile, Brian C., Heppell, Scott A., Hoover, Brian, Irons, David, Jones, Nathan, Kuletz, Kathy J., Nordstrom, Chad A., Paredes, Rosana, Suryan, Robert M., Waluk, Chad M., and Trites, Andrew W.
Abstract:: Spatial coherence between predators and prey has rarely been observed in pelagic marine ecosystems. We used measures of the environment, prey abundance, prey quality, and prey distribution to explain the observed distributions of three co-occurring predator species breeding on islands in the southeastern Bering Sea: black-legged kittiwakes (Rissa tridactyla), thick-billed...
Resource Type:: Article
Full Text:: Atmospheric Sciences, Oregon State University, Corvallis, Oregon, United States of America, 2Department of

Comparative Composition, Diversity and Trophic Ecology of Sediment Macrofauna at Vents, Seeps and Organic Falls

Creator:: Bernardino, Angelo F., Levin, Lisa A., Thurber, Andrew R., and Smith, Craig R.
Abstract:: Sediments associated with hydrothermal venting, methane seepage and large organic falls such as whale, wood and plant detritus create deep-sea networks of soft-sediment habitats fueled, at least in part, by the oxidation of reduced chemicals. Biological studies at deep-sea vents, seeps and organic falls have looked at macrofaunal taxa, but...
Resource Type:: Article
Full Text:: Jolla, California, United States of America, Atmospheric Sciences, Oregon State University, Corvallis

Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider (TM)

Creator:: Klinck, Holger, Mellinger, David K., Klinck, Karolin, Bogue, Neil M., Luby, James C., Jump, William A., Shilling, Geoffrey B., Litchendorf, Trina, Wood, Angela S., Schorr, Gregory S., and Baird, Robin W.
Abstract:: Correction 10 Aug 2012: Klinck H, Mellinger DK, Klinck K, Bogue NM, Luby JC, et al. (2012) Correction: Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider™. PLOS ONE 7(8): 10.1371/annotation/57ad0b82-87c4-472d-b90b-b9c6f84947f8.
Resource Type:: Article
Full Text:: Marine Science Center, Cooperative Institute for Marine Resources Studies, Oregon State University

Density Can Be Misleading for Low-Density Species: Benefits of Passive Acoustic Monitoring

Creator:: Rogers, Tracey L., Ciaglia, Michaela B., Klinck, Holger, and Southwell, Colin
Abstract:: Climate-induced changes may be more substantial within the marine environment, where following ecological change is logistically difficult, and typically expensive. As marine animals tend to produce stereotyped, long-range signals, they are ideal for repeatable surveying. In this study we illustrate the potential for calling rates to be used as a...
Resource Type:: Article
Full Text:: , Colin Southwell3 1 Evolution & Ecology Research Centre, School of BEES, University of New South Wales

A Multi-Year Longitudinal Study of Water Quality Parameters in Four Salmon-Bearing and Recreational Streams on Mount Hood, Oregon

Creator:: Wasowski, Ronald, Alexander, David, Kolmes, Steven, Banet, Nathan, Card, Amy, Haines, Morgan, Kolmes, Elijah, Northcutt, Kelly, Roemer, Derek, and Webber, Sarah
Abstract:: Four streams-Clear Fork, Lost Creek, Camp Creek and Still Creek-in northwestern Oregon's Sandy River Basin were monitored for temperature, dissolved oxygen levels, and fecal bacterial concentrations in a multi-year analysis examining stream health for recreational users and anchor habitat for Pacific Salmon. Temperatures were recorded using micro -T temperature loggers...
Resource Type:: Article
Full Text:: Portland, Portland, Oregon, United States of America, 2 Biology Department, University of Portland

Modeling the Winter–to–Summer Transition of Prokaryotic and Viral Abundance in the Arctic Ocean

Creator:: Winter, Christian, Payet, Jérôme P., and Suttle, Curtis A.
Abstract:: One of the challenges in oceanography is to understand the influence of environmental factors on the abundances of prokaryotes and viruses. Generally, conventional statistical methods resolve trends well, but more complex relationships are difficult to explore. In such cases, Artificial Neural Networks (ANNs) offer an alternative way for data analysis....
Resource Type:: Article
Full Text:: , Oregon State University, Corvallis, Oregon, United States of America, 3 Departments of Earth, Ocean and

ScholarsArchive@OSU

Water, water, everywhere : Defining and assessing data sharing in academia

Characteristics of Settling Coral Reef Fish Are Related to Recruitment Timing and Success

Accelerated Identification of Proteins by Mass Spectrometry by Employing Covalent Pre-Gel Staining with Uniblue A

Mapping Atmospheric Moisture Climatologies across the Conterminous United States

Prey Patch Patterns Predict Habitat Use by Top Marine Predators with Diverse Foraging Strategies

Comparative Composition, Diversity and Trophic Ecology of Sediment Macrofauna at Vents, Seeps and Organic Falls

Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider (TM)

Density Can Be Misleading for Low-Density Species: Benefits of Passive Acoustic Monitoring

A Multi-Year Longitudinal Study of Water Quality Parameters in Four Salmon-Bearing and Recreational Streams on Mount Hood, Oregon

Modeling the Winter–to–Summer Transition of Prokaryotic and Viral Abundance in the Arctic Ocean

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