In the face of dramatic declines in groundfish populations and a lack of sufficient stock assessment information, a need has arisen for new methods of assessing groundfish populations. We describe the integration of seafloor transect data gathered by a manned submersible with high-resolution sonar imagery to produce a habitat- based...
The quantification and description of sea surface temperature (SST) is critically important because it can influence the distribution, migration, and invasion of marine species; furthermore, SSTs are expected to be affected by climate change. To better understand present temperature regimes, we assembled a 29-year nearshore time series of mean monthly...
Melt inclusions trapped in phenocryst phases are important primarily due to their potential of preserving a significant proportion of the diversity of magma composition prior to modification of the parent magma array during transport through the crust. The goal of this investigation was to evaluate the impact of formational and...
This dataset contains a draft assembly of the common milkweed (Asclepias syriaca) nuclear genome, linkage group information, and gene family counts for Asclepias and related species. The genome assembly is accompanied by annotation of gene models, repeat models, transfer RNAs, and open reading frames, and mapping information of Asclepias transcripts,...
During July 1970, albacore boats trolling surface jigs (jig boats) had record catches in an area off the mouth of the Columbia River. The jig fishery declined suddenly in late July and was poor throughout the remainder of the summer. No obvious oceanographic changes were correlated with these drastic changes...
This report provides a strategic approach developed by a Western Association of Fish and Wildlife Agencies interagency working group for conservation of sagebrush ecosystems, Greater sage-grouse, and Gunnison sage-grouse. It uses information on (1) factors that influence sagebrush ecosystem resilience to disturbance and resistance to nonnative invasive annual grasses and...
This report documents and summarizes several decades of work on sage-grouse populations, sagebrush as habitat, and sagebrush community and ecosystem functions based on the recent assessment and findings of the USFWS under consideration of the Endangered Species Act. As reflected here, some of these topics receive a greater depth of...
During the 2017 greater sage-grouse (Centrocercus urophasianus) breeding season, 1,580 aerial and ground lek surveys were conducted at 674 individual lek sites comprising 429 lek complexes. Surveys were conducted at 58.0% of known lek sites in the state. Survey effort during 2017 declined -17.1%, -12.2%, and 14.5% from 2016 levels,...
During the 2016 greater sage-grouse breeding season, 1,908 aerial and ground lek surveys were conducted at 768 individual lek sites comprising 501 lek complexes. Surveys were conducted at 66.0% of known lek sites in the state, which was the greatest proportion of leks ever surveyed in Oregon. Survey effort during...
This Instruction Memorandum (Instruction Memorandum No. 2016-139) provides guidance on the use of terrestrial and aquatic objectives and quantitative data to determine Resource Management Plan effectiveness. Additionally, for RMPs that include Greater Sage-Grouse (GRSG) habitat, this IM provides guidance for tracking and reporting on the implementation of decisions using the...
The greater sage-grouse, an iconic ground-dwelling bird of the West, has experienced significant population declines during the past 50 years from habitat loss. The U.S. Fish and Wildlife Service (FWS) designated sage grouse in 2010 as a candidate for listing under the Endangered Species Act (ESA).
In September 2015, the...
Greater sage-grouse Centrocercus urophasianus populations across North America have been declining due to degradation and fragmentation of sagebrush habitat. As part of a study quantifying greater sage-grouse demographics prior to construction of a wind energy facility, we estimated apparent net nest productivity and survival rate of chicks associated with radio-equipped...
The condition of the sagebrush ecosystem has been declining in the Western United States, and greater sage-grouse (Centrocercus urophasianus), a sagebrush-obligate species, has experienced concurrent decreases in distribution and population numbers. This has prompted substantial research and management over the past two decades to improve the understanding of sage-grouse and...
The purpose of this document (Framework) is to communicate some of the factors the Service is likely to consider in evaluating the efficacy of mitigation practices and programs in reducing threats to sage-grouse. The recommendations provided here are consistent with the information and conservation objectives provided in the 2013 Conservation...
Prior to settlement in the 19th century, greater sage-grouse (Centrocercus urophasianus; hereafter referred to as ‘sage-grouse’) inhabited 13 western States and three Canadian provinces, and their potential habitat covered over 1,200,483 square kilometers (km) (463,509 square miles (mi)). Sage-grouse have declined across their range due to a variety of causes...
This white paper outlines interim guidance for development of Oregon Department of Fish and Wildlife habitat mitigation recommendations associated with renewable energy development and associated infrastructure or other landscape scale industrial-commercial developments in greater sage-grouse habitat in Oregon. This guidance is interim until empirical data are available that quantify the...
This report delineates reasonable objectives, based upon the best scientific and commercial data available at the time of its release, for the conservation and survival of greater sage-grouse. Individual team members contributed by providing technical information and data, participating in critical discussions, providing critical reviews and edits, or authoring sections...
This Instruction Memorandum (IM) provides policy on how to assess habitat for Gunnison and Greater Sage-Grouse, including the Bi-State Distinct Population Segment, (hereafter referred to as "sage-grouse") and under what circumstances the habitat assessment is required.
This Instruction Memorandum (IM) provides guidance on prioritizing implementation decisions for Bureau of Land Management (BLM) oil and gas leasing and development, to be consistent with the Approved Resource Management Plan Amendments for the Rocky Mountain and Great Basin GRSG Regions and nine Approved Resource Management Plans in the Rocky...
This Instruction Memorandum (IM) directs the implementation of the land use plan adaptive management process to evaluate and apply hard and soft triggers and responses, as detailed in the Greater Sage-Grouse (GRSG) Approved Resource Management Plans and Amendments (GRSG Plans), Great Basin and Rocky Mountain GRSG Regional Records of Decision...
This Instruction Memorandum (IM) provides guidance for prioritizing the review and processing of grazing permits and leases (permits) in Greater Sage-Grouse (GRSG) habitat as described in the Records of Decision for the Approved Resource Management Plan Amendments or the Great Basin and Rocky Mountain GRSG Regions and nine Approved Resource...
The purpose of this memorandum is to clarify the Service's perspective on the relationship between livestock grazing and the conservation of sagebrush ecosystems on private lands occurring within the range of greater sage-grouse. This document provides more specific guidance to Service staff as they carry out their conservation mission in...
This document provides the latest science and best biological judgment to assist in making management decisions. Fortunately, recent emphasis on sage-grouse conservation has resulted in a substantial number of publications dealing with a variety of aspects of sage-grouse ecology and management, summarized in the 2010 listing petition (75 FR 13910),...
The Forest Service and the Bureau of Land Management propose to adopt coordinated ecosystem management direction for the lands they administer within the range of the northern spotted owl. This Supplemental Environmental Impact Statement (SETS) presents as alternatives the options, with slight modifications, developed by the Forest Ecosystem Management Assessment...
Because studies of forestry effects on wetlands have been so infrequent in the Pacific Northwest, each section in this report drew heavily from studies of forestry impacts to streams and riparian zones. After assembly and synthesis, that information was extrapolated, mostly in the form of hypotheses, to the very different...
This document provides an updated perspective on the distribution of the species in the Willamette River Basin, based on new field surveys, literature review, and contacts with other biologists and landowners. It also presents recommendations for additional monitoring and research.
There is a lack of fundamental knowledge about the role which adhesive flow and infiltration plays in the micro-mechanical performance of wood adhesive bonds. This data set, for the first time, provides a way to study directly the relationship between adhesive flow and the micro-mechanics of wood adhesive bonds.
Specimens...
The Nearshore Assessment Tool for Alaska: Southeast (NATAK-SE) is a standardized protocol for rapidly assessing the habitat and functions of a particular marine or estuarine shore segment (intertidal zone and immediately adjoining upland) anywhere in Southeast Alaska. It consists of data forms and a spreadsheet. It has a Rapid component...
Small, single-point load cells were used to measure force exerted by the first leaf of three hard red cultivars (Farnum, Finley, and Norwest 553) as it emerged from a deep planting depth in a small containerized volume of soil. Coleoptile diameter was determined using a 0 to 25 mm, ratchet-stop...
The research question address in this study is, “To what extent will the use of hands-on activities for introducing concepts in bioinformatics promote student engagement in after-school STEM club settings?” It is hypothesized that high school students' engagement in hands-on bioinformatics activities promotes their awareness of, and interest in, STEM...
Data on green crabs collected and trapped from Makah Bay to Coos Bay in 2017.
Data included: Estuary, site, date, sex, carapace width, weight, molt state, estimated year class, missing limbs, collection method and collector.
Background. Ampelisca eschrichtii Krøyer, 1842 of the Sakhalin Shelf of the Okhotsk Sea, Far Eastern Russia, comprise the highest known biomass concentration of any amphipod population in the world and are a critically important prey source for western gray whales. Growth and reproduction in this population has not been apparent...
Floating guidance structures are intended to promote safe in-stream passage for juvenile salmon migrating downstream through reservoirs. However, the ability of an engineered structure to guide fish to safe passage has been primarily tested either after large-scale implementation in existing reservoirs or in laboratory studies and computer simulations without live...
This dataset contains the following:
1) A full list of the scaffolded presentations of the torsion-free vertex-regular lattices of Bourdon's building I55, classified up to isomorphism.
2) The source code for the programs used to construct these presentations in the software GAP 4.
3) The source code for the programs...
These datasets document observations of pronghorn crossing structures in the Greater Yellowstone Ecosystem between 2011 and 2014. These datasets include information about the probability of pronghorn crossing the structures and their behaviors around the structures themselves (e.g., sustained vigilance, stress).
Snowpack impacts and trends in precipitation regimes are investigated for the mountainous western United States from water years 1984–2016. The vast majority of snow trend studies utilize undifferentiated air temperature records, which do not segregate between days with and without precipitation and effectually dilute temperature trends relevant for snowpack monitoring....
This study utilized long-term daily precipitation and snow-water equivalent (SWE) data derived from the Natural Resources Conservation Service’s Snow Telemetry Network (SNOTEL). All existing SNOTEL sites in the Olympic, Coast and Cascade ranges in Washington (n = 66) and Oregon (n = 52) and in the California Sierra Nevada (n...
Micronutrient deficiency, also known as the hidden hunger, affects over two billion people worldwide. Potato is the third most consumed food crops in the world, and is therefore a fundamental element of food security for millions of people. Increasing the amount of micronutrients in food crop could help alleviate worldwide...
The accessions used in this study were comprised of 246 snap bean and 49 dry bean genotypes. Of these, 150 snap bean accessions came from the Common Bean Coordinated Agriculture Project Snap Bean Diversity panel, an assemblage of 59 Chinese snap bean genotypes obtained from a trip to China in...
Movement in an important component of an animal’s life cycle when it relies on both aquatic and terrestrial habitats. When multiple species overlap in the use of these habitats, they rely on other methods to reduce competition for shared resources. This dataset measured the jumping performance and movement behavior of...
The Willamette Valley (Oregon) Prairie Plant Trait Dataset is a compilation of plant traits of species important in upland prairies, wetland prairies, vernal pools, and emergent wetlands, and in the restoration of prairies and wetlands of the Willamette Valley of Oregon. These species are also found widely throughout the Pacific...
Sequence alignments, phylogenetic trees, and associated information for Phylogenetic Estimation and Ancestral State Reconstruction of Rubus (Rosaceae) using Target Capture Sequencing
Fish monitoring programs often rely on the collection, species identification, and counting of individual fish over time to inform natural resource management decisions. Thus, the utility of the data used to inform these decisions can be negatively affected by species misidentification. Fish species misidentification bias can be minimized by confirming...
This dataset contains the taxonomic classifications of environmental DNA (eDNA) sequences obtained from Fall Creek, Oregon, via microfluidic multiplex PCR (Fluidigm Access Array) and high-throughput sequencing. It is accompanied by electrofishing counts taken at the same time as the eDNA samples. Metadata and R scripts are provided to analyze the...
This dataset was created for the purpose of collecting and cataloguing sources that mentioned aspects of cultural diversity or workforce diversity within natural resource professions. The exploratory questions that prompted the collection of sources in this dataset were:
- Is diversity discussed in scholarly sources within natural resources?
- If...
This dataset was produced as a result of experiments conducted with simple and alginate complex particles that were used to evaluate feeding in California yellowtail and white seabass post larvae. Retention data was collected from a series of retention trials whereby particles were suspended in seawater for various lengths of...
This data set includes the calibrated predictions of Depth, Elevation, Water Surface Elevation, Shear Stress, Vorticity, and Froude Number for three reaches in the Mill Creek watershed, a tributary of the Siletz River, Oregon. The predictions are for bankfull flow before and after the addition of Large Wood using Nays2DH,...
This dataset is a compilation of all published denudation rates derived from in-situ cosmogenic radionuclides as of 2016. All sites have been geo-referenced (WGS 84). Geo-referenced locations are then used to extract the yearly aridity index for each site from the CGIAR global Aridity dataset (https://cgiarcsi.community/data/global-aridity-and-pet-database/). Denudation rates are used...
Dendrochronological data provides insight in the tree development, and used in conjunction with forest inventory, can supply inputs for growth and yield modeling. However, accurate and precise measurements of a large number of incremental cores require significant resources. One possible source of valuable tree ring data are national forest inventories...
The dataset was generated as part of a study conducted by Oregon State University (OSU) and funded by the Oregon Department of Transportation (ODOT). The study, titled "Use of Blue Lights on Paving Equipment in Work Zones," was conducted from June to December 2018. The dataset includes vehicle speed and...
Engineered log jams (ELJs) are commonly implemented in rivers to stabilize streambanks and diversify fish habitat, but few studies have verified the hydraulic benefits of ELJs by assessing their effects on the flow field. This field and modeling study assessed the effects of an ELJ on various characteristics of the...
The legality of wood products in trade often depends on their geographic origin, creating a need for forensic tools that can verify claims of provenance for wood and wood products. Cedrela odorata L. or Spanish cedar is a target of illegal logging. We developed a 140 SNP Agena™ MassARRAY® assay...
Data on green crabs collected and trapped from Makah Bay to Coos Bay in 2018. Data included: Estuary, site, date, sex, carapace width, weight, molt state, estimated year class, missing limbs, collection method, collector and pheromone treatment.
This data contains large supplementary tables for the PhD dissertation of Dariia Vyshenska. Title of the Dissertation: "Identification of Cervical Cancer Key Regulators using Network Biology Approach"
The dataset contains data from two types of research.
Research #1: Identification of bacterial regulators of cervical cancer gene expression. It contains microbial...
This dataset contains data layers used and produced by a fuzzy logic model for biomass loss risk under projected climate change in Oregon and Washington west of the Cascade Mountains crest.
This archive is a compilation of SWMM input files and STELLA models, augmented by R scripts to perform various processing for sensitivity analysis, data import / export, plot generation and computation of various summary outputs. Part I is the sensitivity analysis of a SWMM model representative of the case study...
Genotype data consisting of 10,546 single nucleotide polymorphisms on the Illumina Infinium Genechip BARCBEAN6K_3 platform for 149 snap bean accessions.
This data contains results from direct numerical simulations of three-dimensional, premixed, hydrogen/air flames, using the multicomponent diffusion model. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated article.
This data contains results from direct numerical simulations of three-dimensional, premixed, hydrogen/air flames, using the mixture-averaged diffusion model. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated article.
This dataset consists of planted crop-tree growth metrics (Pseudotsuga menziesii), non-crop tree vegetation metrics, and foraging data for black-tailed deer (Odocoileus hemionus columbianus) and Roosevelt elk (Cervus canadensis rooseveli) collected from the Intensive Forest Management experiment, Oregon Coast Range, USA, 2011-2016. The objective of the experiment was to quantify the...
This dataset consists of native and exotic plant species metrics, including cover, richness, relative abundance and responses to the exclusion of wild ungulates and herbivory. The data were used for the manuscript: "Synergistic effects of wild ungulates and management intensification suppress native plants and promote exotics", published in the journal...
This dataset is based on quantitative PCR (qPCR) output. Output from all qPCR was compiled in this dataset and kept as the original. Information about sampling time, id, concentration, sites and a conversion of the quantity in femtograms were added as complement to the qPCR output to facilitate data analysis
This data contains results from direct numerical simulations of premixed, two-dimensional unsteady and three-dimensional, turbulent hydrogen/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely...
This data contains results from direct numerical simulations of premixed, three-dimensional, turbulent n-heptane/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated...
This data contains results from direct numerical simulations of premixed, three-dimensional, turbulent toluene/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated...
This dataset contains results from direct numerical simulations of premixed, three-dimensional, turbulent hydrogen/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about the enstrophy budget and flame structure. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the...
European green crab, Carcinus maenas, trapped and collected in coastal Oregon and Washington coastal estuaries during the 2019. Data for individual crabs include: estuary, site, date of collection, sex, carapace width, weight, molt stage (color of abdomen), missing limbs, estimated year class, method of collection, and name of collector.
To investigate the effects of logging, three small watersheds in the Alsea River basin on the west slope of the Oregon Coast Range were selected for study. This was an interdisciplinary investigation to evaluate the influence of specific logging methods on stream regimen and on aquatic resources. The study plan...
We studied avian development in 49 species of temperate and 153 species of tropical New World passerine birds to determine how growth rates, and incubation and nestling periods, varied in relation to other life-history traits. We collected growth data and generated unbiased mass and tarsus growth rate estimates (mass n...
We examined long-term changes in daily streamflow associated with forestry practices with two datasets (this one and the original Alsea Streamflow dataset (1972) over a 60-year period (1959–2017) in the Alsea Watershed Study, Oregon Coast Range, Pacific Northwest, USA. In this contemporary period, 2006 to 2017 (12 water years), data...
These data were obtained from GPS radio collared mule deer from 2015-2017 in the John Day Basin. The dataets includes location data for used vs available predictor variable information for time since fire, juniper canopy cover, NDVI, and vegetation community for winter, summer:migratory, summer:resident seasonal ranges. The datasets were used...
This dataset includes the datasets of suspended sediment concentration and environmental variables used to model stream metabolism, and the modeled stream metabolism results for two streams. For more information, see Cargill, SK (2019). The Influence of Lithology on Stream Metabolism in Mountain Systems. MS Thesis, Oregon State University.
The data here was collected at Oregon State University (major and trace elements) and New Mexico State University in order to address rhyolite petrogenesis in the Taupo Volcanic Zone (TVZ), New Zealand. Each sheet contains data for 18 eruptions from Okataina and Taupo Volcanic Centers, the two most recently active...
Numbers of carabid beetles, caterpillars, cranefly larvae and slugs collected from pitfall and refuge traps in ten Annual Ryegrass fields in Linn County, Oregon between March 23, 2018 and June 20, 2019. Given are details on sampling date, trap, size and sex (carabids only), weight (slugs only) and species (where...
This dataset contains DNA sequence data of Oncorhynchus species, isolated from environmental DNA (eDNA) from Pacific Northwest streams via microfluidic eDNA metabarcoding and high-throughput (Ilummina) sequencing (samples collected from 2017-09-22 to 2017-10-10). It is accompanied by scripts and commands for data analyses including: sequence denoising, calculation of entropy values by...
These data set includes calibrated predictions of Depth, Velocity and Shear Stress for seven discharges (0.4 to 3.4m^3, equivalent to 0.12 Qbf to Qbf) at Oak Creek using the Flow and Sediment Transport with Morphological Evolution of Channels (FaSTMECH).
Numbers of invertebrates (except family Carabidae) collected from pitfall and refuge traps in ten Annual Ryegrass fields in Linn County, Oregon between March 23, 2018 and June 20, 2019. Given are details on sampling date, site and trap ID, trap type, taxonomy (at least order level) and life stage.
Hyperspectral images were taken from March till October, 2018, of southwestern white pine (Pinus strobiformis), SWWP, seedlings of ten different seed-source families. Half of the seedlings were inoculated with white pine blister rust (Cronartium ribicola). Visual assessments of vigor coincided with hyperspectral data acquisition.
The aim of the experiment was...
The data is a JSON format file containing the position, velocity, and fish identifier data for 300 golden shiners in a shallow (depth of 4.5 to 5 cm) rectangular water tank (2.1 by 1.2 meters). There are 5000 individual frames (samples of position and velocity) corresponding to video taken at...
High-resolution measurements of salinity, temperature, and partial pressure of carbon dioxide (pCO2) taken at Whiskey Creek Shellfish Hatchery, Netarts Bay, Oregon, from 2014 - 2019 are provided in this data set. Briefly, a permanently submerged pipe draws in bay water to supply the shellfish hatchery tanks. Unmodified water is branched...
Sea surface temperature (SST) was measured by several instruments deployed from the research vessel Sally Ride in the Bay of Bengal for the Monsoon Intraseasonal Oscillations in the Bay of Bengal (MISO-BOB) 2019 field experiment. This data set presents 1 minute averages of 3 m SST from the Scripps Institution...
Historical forest harvesting practices were reviewed in the original Alsea Watershed Study where they found increased energy
loading to the stream and produced higher stream temperatures. This was an important early research site that led to the
development of contemporary forest management practices to protect water quality and fish habitat...