Index Catalog // ScholarsArchive@OSU

Higher-level Analysis of RNA-Seq Experiment: Multiple Data Sets and Multiple Genes

Creator:: Zhuo, Bin
Abstract:: Differential expression (DE) analysis is a key task in gene expression study, because it uncovers the association between expression levels of a gene and the covariates of interest. This dissertation pertains to two particular aspects of DE analysis—identifying stably expressed genes for count normalization and accounting for correlation between DE...
Resource Type:: Dissertation
Full Text:: linear model by Y = X� +Z1u1 + · · ·+Zquq + ✏ (6) Equation (6) di↵ers from equation (5) only in the

Model-based Clustering Methods in Exploratory Analysis of RNA-Seq Experiments

Creator:: Zhang, Wanli
Abstract:: Differential expression (DE) analysis allows us to identify genes that respond differently under varying experimental conditions, therefore granting us an understanding of the molecular basis of phenotypic variation. Following the identification of significantly differentially expressed genes, it is often of the researcher's interest to elucidate hidden patterns or groups in...
Resource Type:: Dissertation
Full Text:: Clustering Methods in Exploratory Analysis of RNA-Seq Experiments Abstract approved: Yanming Di

Comparing statistical techniques to classify the structure of mountain forest stands using CHM-derived metrics in Trento province (Italy)

Creator:: Torresan, Chiara L., Strunk, Jacob, Zald, Harold S. J., Zhiqiang, Yang, and Cohen, Warren B.
Abstract:: In some cases a canopy height model (CHM) is the only available source of forest height information. For these cases it is important to understand the predictive power of CHM data for forest attributes. In this study we examined the use of lidar-derived CHM metrics to predict forest structure classes...
Resource Type:: Article
Full Text:: Trento province (Italy) Torresan, C. L., Strunk, J., Zald, H. S. J., Zhiqiang, Y., & Cohen, W. B. (2014

Statistical analysis of RNA sequencing count data

Creator:: Mi, Gu
Abstract:: RNA-Sequencing (RNA-Seq) has rapidly become the de facto technique in transcriptome studies. However, established statistical methods for analyzing experimental and observational microarray studies need to be revised or completely re-invented to accommodate RNA-Seq data's unique characteristics. In this dissertation, we focus on statistical analyses performed at two particular stages in...
Resource Type:: Dissertation
Full Text:: Sequencing Count Data Abstract approved: Yanming Di Daniel W. Schafer RNA-Sequencing (RNA-Seq) has rapidly

Seasonal occurrence of resident parasitoids associated with Drosophila suzukii in two small fruit production regions of Italy and the USA

Creator:: Miller, Betsey, Anfora, Gianfranco, Buffington, Matt, Daane, Kent M., Dalton, Daniel T., Hoelmer, Kim M., Rossi Stacconi, M. Valerio, Grassi, Alberto, Ioriatti, Claudio, Loni, Augusto, Miller, Jeffrey C., Quantar, M'bark, Wang, Xingeng, Wiman, Nik G., and Walton, Vaughn M.
Abstract:: For the first time we report the results of a survey to determine the presence, seasonal phenology and biological control status of indigenous parasitoid populations utilizing Drosophila suzukii (Matsumura) and Drosophila melanogaster Meigen (Diptera Drosophilidae) as hosts in Trento Province, Northern Italy, and the Willamette Valley, Oregon, USA. Larval and...
Resource Type:: Article
Full Text:: ), 255-263. Università di Bologna, Department of Agricultural Sciences Version of Record http

Decomposition of di-p-toluenesulfonyl-hydrazones

Creator:: Bradway, Diane Elizabeth
Abstract:: Thermal decomposition of several di-p-toluenesulfonylhydrazones was studied. It was found that the carbene decomposition of tetramethyl-1,3-cyclobutanedione, di-p-toluenesulfonylhydrazone gave two products resulting from rearrangement. One was identified as 2,5-dimethyl-1,3,4-hexatriene. A tentative structure for the second was proposed. During the course of the study, a more convenient procedure for thermal decompositions was...
Resource Type:: Masters Thesis
Full Text:: ) TitIE TT{ERMAL DECOMPOSITION OF DI-P-TOLI'ENESUI,FOML- HYDRAZONES Abstract approve (l,tajor profeseor

The effect of uncertainty representation on information integration performance in a simulated ocean surveillance task

Creator:: Chou, Chung-di
Abstract:: Human operator performance was evaluated using two types of displays in a simulated ocean surveillance task. The two types of displays studied included a display in which position uncertainty information was given (polygon display) and a display in which uncertainty was not explicitly shown (line display). The experimental task was...
Resource Type:: Masters Thesis
Full Text:: integration performance in a simulated ocean surveillance task AN ABSTRACT OF THE THESIS OF CHUNG-DI CHOU

Chromium Phillips Catalyst on Tin Oxide Substrate: Deposition and Characterization

Creator:: Chen, Di
Abstract:: In order to synthesize polyethylene by the microreactor with a catalyst, this thesis prepares the chemical coating layers for the reactor channel. There are two layers in the channel: the Phillips catalysts and an antimony-doped tin oxide layer on glass substrate. The Phillips catalyst help to synthesize polyethylene in the...
Resource Type:: Masters Thesis
Full Text:: ABSTRACT OF THE THESIS OF Di Chen for the degree of Master of Science in Chemical Engineering

Regional scale sandbar variability : observations from the U.S. Pacific Northwest

Creator:: Di Leonardo, Diana R.
Abstract:: Understanding sandbar dynamics and variability is integral to developing a predictive capacity for nearshore flows, sediment transport, morphological change, and ultimately for determining coastline exposure to damaging storm waves. Along the high-energy U.S. Pacific Northwest (PNW) coast, sandbars typically dominate the bathymetry of the active zone. Here we report on...
Resource Type:: Masters Thesis
Full Text:: ABSTRACT OF THE THESIS OF Diana R. Di Leonardo for the degree of Master of Science in Geology

Decadal Changes in Lichen and Vegetation Communities in Relation to Metal Deposition and Climate in Northern Alaska

Creator:: Di Meglio, Elisa B.
Abstract:: The Red Dog Mine transports concentrated zinc and lead ore in northwestern Alaska through Cape Krusenstern National monument along a haul road. High metal levels in the moss Hylocomium splendens along the haul road have been attributed to ore dust released during transport. The mine has implemented several pollution abatement...
Resource Type:: Masters Thesis
Full Text:: AN ABSTRACT OF THE THESIS OF Elisa B. Di Meglio

ScholarsArchive@OSU

Higher-level Analysis of RNA-Seq Experiment: Multiple Data Sets and Multiple Genes

Model-based Clustering Methods in Exploratory Analysis of RNA-Seq Experiments

Comparing statistical techniques to classify the structure of mountain forest stands using CHM-derived metrics in Trento province (Italy)

Statistical analysis of RNA sequencing count data

Seasonal occurrence of resident parasitoids associated with Drosophila suzukii in two small fruit production regions of Italy and the USA

Decomposition of di-p-toluenesulfonyl-hydrazones

The effect of uncertainty representation on information integration performance in a simulated ocean surveillance task

Chromium Phillips Catalyst on Tin Oxide Substrate: Deposition and Characterization

Regional scale sandbar variability : observations from the U.S. Pacific Northwest

Decadal Changes in Lichen and Vegetation Communities in Relation to Metal Deposition and Climate in Northern Alaska

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