Index Catalog // ScholarsArchive@OSU

Genetic resources for methane production from biomass described with the Gene Ontology

Creator:: Purwantini, Endang, Torto-Alalibo, Trudy, Lomax, Jane, Setubal, João C., Tyler, Brett M., and Mukhopadhyay, Biswarup
Abstract:: Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change. Biological CH₄ production or methanogenesis is mostly performed by methanogens, a group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂ plus...
Resource Type:: Article

DNA fingerprinting and genome mapping in meadowfoam

Creator:: Katengam, Sureeporn
Abstract:: Marker information in the new oilseed crop, meadowfoam, is limited. Molecular markers to facilitate meadowfoam breeding and cultivar improvement are not available. The knowledge of genetic relationships among recent germplasm is not known. The objectives of this study were (i) to gain an understanding of genetic diversity and relationship patterns...
Resource Type:: Dissertation
Full Text:: DNA Fingerprinting and Genome Mapping in Meadowfoam AN

Mapping of quantitative trait loci for malting quality in a winter X spring barley (Hordeum vulgare, L.) cross

Creator:: Oziel, Adeline M.
Abstract:: Making quality and winterhardiness in barley are "ultimate" phenotypes composed of component, quantitatively inherited traits. A 69-point genome map of the seven chromosomes of barley was used, in conjunction with multi-environment phenotypes for grain yield and malting quality, to determine the chromosome locations of quantitative trait loci (QTLs). A combined...
Resource Type:: Masters Thesis
Full Text:: "ultimate" phenotypes composed of component, quantitatively inherited traits. A 69-point genome map of the

Simple sequence repeat marker development and fingerprinting in Cuphea lanceolata Ait. and C. viscosissima Jacq

Creator:: Karmarkar, Vidyadhar M.
Abstract:: Microsatellites or simple sequence repeats (SSRs) are highthroughput sequence based DNA markers that have been exploited as tools for measuring genetic distance and diversity in evolutionary studies, protection of intellectual property, genetic resource conservation management, cultivar identification and molecular breeding of crop plants. We isolated and sequenced 1095 clones from...
Resource Type:: Masters Thesis
Full Text:: me valuable suggestions regarding aspects of my research. I am deeply thankful to Adam Heessacker

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Creator:: Mellbye, Brett L.
Abstract:: High-throughput culturing (HTC) consisting of extinction culturing in autoclaved seawater has led to the isolation and characterization of many novel strains of oligotrophic marine bacteria. Strain HTCC 2207 was isolated from the Oregon coast by the HTC method. Phylogenetic analysis based on 16S rRNA gene sequence showed that this strain...
Resource Type:: Honors College Thesis
Full Text:: followed by genome sequencing and interpretation, proteomic analysis by liquid chromatography/tandem mass

Genomic Resource Development for European Hazelnut (Corylus avellana L.)

Creator:: Rowley, Erik R.
Abstract:: European hazelnut (Corylus avellana L.) is an important crop Oregon's Willamette Valley, producing 99% of the hazelnuts grown in North America and brings over US $60 million dollars to the region annually. Hazelnuts are rich in fiber and vitamins, as well in demand by consumers due to their popularity as...
Resource Type:: Dissertation
Full Text:: generation was done in the Oregon State University Center for Genome Research and Biocomputing core

Automated annotation of Caenorhabditis mitochondrial genomes and phylogenetic analysis

Creator:: Campbell, Jessica L.
Abstract:: Motivation Relatively little is known about the evolution of mitochondrial genomes between Caenorhabditis species despite decades of research. Both the worldwide search for new nematode species and the effort to increase sequencing speeds require automated tools to quickly characterize and categorize large amounts of data. Results We developed an automated...
Resource Type:: Presentation and Undergraduate Thesis

Toward genome-enabled mycology

Creator:: Hibbett, David S., Stajich, Jason E., and Spatafora, Joseph W.
Abstract:: Genome-enabled mycology is a rapidly expanding field that is characterized by the pervasive use of genome-scale data and associated computational tools in all aspects of fungal biology. Genome-enabled mycology is integrative and often requires teams of researchers with diverse skills in organismal mycology, bioinformatics and molecular biology. This issue of...
Resource Type:: Article
Full Text:: the expertise and resources necessary to execute all aspects of genome-enabled research projects

Assessing De Novo transcriptome assembly metrics for consistency and utility

Creator:: O’Neil, Shawn T. and Emrich, Scott J.
Abstract:: Background: Transcriptome sequencing and assembly represent a great resource for the study of non-model species, and many metrics have been used to evaluate and compare these assemblies. Unfortunately, it is still unclear which of these metrics accurately reflect assembly quality. Results: We simulated sequencing transcripts of Drosophila melanogaster. By assembling...
Resource Type:: Article
Full Text:: ://www.biomedcentral.com/1471-2164/14/465 RESEARCH ARTICLE Open Access Assessing De Novo transcriptome assembly metrics

Identification of quantitative trait loci underlying kernel extra-softness and related traits by linkage and association mapping in wheat (Triticum aestivum L.)

Creator:: Wang, Guomei
Abstract:: Kernel hardness (KHA) is a major factor determining break flour yield (BFY) and end-use quality of common wheat (Triticum aestivum L.). Within the soft wheat class, genotypes with consistently softer grains than common soft wheat are considered to be 'extra-soft'. In addition, 'extra-soft' wheats have greater BFY than common soft...
Resource Type:: Dissertation
Full Text:: spirit of adventure in regard to research and scholarship, and an excitement in regard to teaching, for

ScholarsArchive@OSU

Genetic resources for methane production from biomass described with the Gene Ontology

DNA fingerprinting and genome mapping in meadowfoam

Mapping of quantitative trait loci for malting quality in a winter X spring barley (Hordeum vulgare, L.) cross

Simple sequence repeat marker development and fingerprinting in Cuphea lanceolata Ait. and C. viscosissima Jacq

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Genomic Resource Development for European Hazelnut (Corylus avellana L.)

Automated annotation of Caenorhabditis mitochondrial genomes and phylogenetic analysis

Toward genome-enabled mycology

Assessing De Novo transcriptome assembly metrics for consistency and utility

Identification of quantitative trait loci underlying kernel extra-softness and related traits by linkage and association mapping in wheat (Triticum aestivum L.)

Limit your search

Academic Affiliation

Advisor

Commencement Year

Committee Member

Conference Name

Conference Section/Track

Creator

Contributor

Date

Decade

Degree Field

Degree Level

Degree Name

File Format

Language

License

Location

Non-Academic Affiliation

Peer Reviewed

Resource Type

Rights Statement

Subject

Search Constraints

Search Results

Limit your search