Small rivers, such as those that line the Oregon coast, have been shown to deliver significant concentrations of suspended sediments and nutrients to estuaries and the coastal ocean during wet seasons during which winds are predominantly downwelling-favorable. The fate of the buoyant source water and of any suspended or dissolved...
The Columbia River delivers the greatest amount of freshwater to the coastal ocean along the U.S. Pacific coast. This freshwater forms the Columbia River plume, a mesoscale plume with significant implications on coastal ocean physical, biological, chemical, and geological processes. The plume is transported south and offshore during the upwelling...
This dissertation investigates the dynamics of the tidally modulated outflow from the Columbia River mouth using high resolution measurements of velocity, density and turbulent microstructure. At high tide, flow through the river mouth reverses from flood (onshore) to ebb (offshore). During ebb, buoyant fluid issues from the river mouth and...
Currently, forecasts produced by the Oregon-Washington (OR-WA) Coastal Ocean Forecast System are constrained by assimilation of only surface observations. The 4-dimensional variational (4DVAR) data assimilation (DA) algorithm is utilized to combine the model and the data, with the time-independent forecast ("background'') error covariance B. In this study, two possible improvements...
Influences of tidal and slower (subtidal) oceanic flows over the continental shelf and slope off Oregon are studied using a high-resolution ocean circulation model and comparative model-data analyses. The model is based on the Regional Ocean Modeling System (ROMS), a fully nonlinear, three-dimensional model (using hydrostatic and Boussinesq approximations). The...
Changes in ocean conditions influenced by climatic fluctuations have lead to changes in individual species distributions, which alter the diversity, communities and species interactions across marine ecosystems worldwide. Assessing the species composition and identifying regions and habitats that can safeguard the persistence of biota are critically important. In this dissertation,...
Copper and iron are essential micronutrients that are required by marine primary producers for a variety of metabolic processes. Over 99% of both copper and iron are bound within organic complexes in the marine environment, however the molecular identity of many of these complexes remains unknown. The speciation of these...
Two bloom-detection products were developed for the Oregon coast that describe the relative percent change observed between successive pairs of 8-day chlorophyll-a (CHL) and fluorescence line-height (FLH) products obtained from the MODerate Resolution Imaging Spectroradiometer aboard the Aqua spacecraft (MODIS-Aqua). The CHL[subscript dev] and FLH[subscript dev] products, respectively, were optimized...
Harmful algal blooms (HABs) are a problem for coastal communities, the fishing industry, and coastal organisms. Pseudo-nitzschia spp. is a regularly occurring diatom in Oregon’s coastal waters. At times, Pseudo-nitzschia spp. can facultatively produce domoic acid, a neurotoxin that can bioaccumulate in the food chain. While regular shore-based sampling provides...
Phytoplankton are a sentinel class of organisms in the marine environment. Through their photosynthetic activity in sunlit waters worldwide, phytoplankton shape the health and productivity of marine ecosystems and impact the global climate. In this work a range of ocean sensing technologies (via ships, surf zone sampling, moorings, gliders, and...
It is well documented that microplastics and semi-synthetic particles (<5 mm) pervade the marine environment, with their ingestion by marine fauna eliciting global concern. While fishes exposed to microparticles in a laboratory setting have exhibited both sub-lethal and lethal effects, the diversity in material, morphology, and size of these contaminants...
Wind-driven coastal upwelling brings subsurface water onto the central-Oregon shelf after the spring transition each year. This cold and salty source water is oxygen-poor, yet above the hypoxic threshold, dissolved oxygen < 1.4 ml l⁻¹. Once on the shelf, dissolved oxygen (DO) concentrations of upwelled near-bottom waters are modified by...
Netarts Bay is a shallow, temperate, tidal lagoon located on the northern coast of Oregon and site of the Whiskey Creek Shellfish Hatchery (WCSH). Data collected with an automated flow-through system installed at WCSH capable of high-resolution (1 Hz) pCO2 and hourly TCO2 measurements, with measurement uncertainties of <2.0% and...
Understanding connectivity among exploited populations is critical to their sustainable management and long-term viability. In the marine environment, estimates of connectivity often rely on the use of genetic markers, as dispersal primarily occurs during a planktonic larval phase which is difficult to track using direct methods. In this thesis, we...
Pacific razor clams (Siliqua patula) are narrow oblong bivalves that can be found in sandy habitats along the western coast of the United States, from Alaska (Aleutian Islands) to southern California (Pismo Beach). In Washington state, the razor clam fishery has been documented to be an important contributor to the...
Continental margin sediments have been recognized as a major source of dissolved iron to the global ocean. The focus of this study was to build an early diagenetic model that can be used to simulate iron fluxes from continental margins and thereby identify key controlling factors. The model uses the...
Coastal hypoxia, or low oxygen episodes pose a threat to marine resources in the Pacific Northwest. Previous research into nearshore oxygen dynamics have linked coastal upwelling to this seasonally occurring phenomenon, however the manifestation of hypoxic waters over coastal fishing grounds was not well understood. Through a partnership with Dungeness...
Continental shelf sediments are sinks for dissolved oxygen and sources of many major and minor nutrients required for oceanic surface primary production, resulting in a strong coupling between benthic and pelagic biogeochemical cycling. However, the influence and spatiotemporal variability of benthic remineralization on bottom-water chemistry and the supply of nutrients...
A carefully calibrated primitive-equation model from 41°N to 48°N is used to study the poleward undercurrent off the US west coast. Chapter 2 describes poleward flow over the slope from Eulerian and Lagrangian perspectives. The model is robust, in the sense of several characteristics being qualitatively consistent with observational and...
As the global demand for seafood increases each year, there is a growing need to expand sustainable aquaculture in the interests of food security and resilience of coastal communities. Pacific oysters, Crassostrea gigas, are grown in West coast estuaries - where cultures often overlap with the federally protected native eelgrass,...