Index Catalog // ScholarsArchive@OSU

Establishment and dynamics of methane-oxidizing microbial communities in marine sediments

Creator:: Klasek, Scott A.
Abstract:: Marine sediments are vast sources and reservoirs of methane, a potent greenhouse gas. Most of this methane is anaerobically oxidized by archaea before it can reach the overlying ocean, though the efficiency of this process often depends on methane fluxes and mechanisms of fluid transport. Anaerobic methanotrophic archaea, or ANME,...
Resource Type:: Dissertation

The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Arctic Lagoons

Creator:: Baker, Kristina D.
Abstract:: The lagoons spanning Alaska’s Beaufort Sea coast provide a unique habitat for arctic wildlife. These lagoons and the food webs they support face extreme seasonality with nine months of ice cover followed by a spring thaw that pulses a large amount of freshwater and nutrients into the lagoons. Bacteria link...
Resource Type:: Masters Thesis

Tracking Bacterial and Viral Shifts in Three Organisms to Shed Light on the Complex Role of Microbes in Coral Reef Health

Creator:: Messyasz, Adriana
Abstract:: Stony corals are the ecosystem engineers of the vital, dynamic, and complex marine ecosystem known as coral reefs. Globally, coral reefs are undergoing degradation from multiple anthropogenic stressors. Coral reef organism holobionts, or the host along with its microbial components, are key to reef ecosystem success and functioning. Marine microbes...
Resource Type:: Dissertation

Bacterial and Host Factors Contributing to Mycobacterium avium subspecies paratuberculosis Persistent Infection

Creator:: Phillips, Ida L.
Abstract:: Mycobacterium avium subspecies paratuberculosis (MAP) is the causative agent of Johne’s disease, a chronic granulomatous enteritis that plagues domestic and wild ruminants globally. During the silent stages of Johne’s disease, infected animals intermittently shed bacteria for years prior to clinical diagnosis during advanced disease stages. This strategy allows MAP to...
Resource Type:: Dissertation

Ecophylogenetic Characterization of the Gut Microbiome of At-risk Companion and Food Animals

Creator:: Kirchoff, Nicole S.
Abstract:: Agricultural and companion animals are integral to our way of life as they provide us with nourishment, financial resources, transportation, and companionship. However, pets, managed animals in the agricultural industry, as well as wild populations of food animals are all subject to health and mortality risks. The gut microbiome is...
Resource Type:: Dissertation

Effects of Anthropogenic Stressors on Seagrass and Coral Microbiomes

Creator:: Wang, Lu
Abstract:: Seagrasses and coral reefs play important roles in nutrient cycling, coastal protection, and maintaining marine biodiversity. However, these coastal marine organisms are declining globally due to anthropogenic stressors, such as rising ocean temperatures, ocean acidification, and eutrophication. These organisms live in close association with their microbiomes, which can be beneficial...
Resource Type:: Dissertation
Full Text:: . Burkepile Rebecca Vega Thurber Published: March 2018 (doi: 10.3389/fmars.2018.00101

Novel Copper and Iron Complexes along the Oregon Coastal Upwelling Margin

Creator:: Bright, Peter, W.
Abstract:: Copper and iron are essential micronutrients that are required by marine primary producers for a variety of metabolic processes. Over 99% of both copper and iron are bound within organic complexes in the marine environment, however the molecular identity of many of these complexes remains unknown. The speciation of these...
Resource Type:: Masters Thesis

Host-Induced Gene Silencing in Black Cottonwood for Control of Septoria Canker: Efficacy and Non-Target Impacts

Creator:: Gordon, Michael I.
Abstract:: Septoria canker remains the most important disease of poplars in intensively managed forest plantations. Genetic resistance has long been considered the best way to manage for this disease. Transgenic resistance mediated by RNA silencing against pathogens and pests (HIGS: host-induced gene silencing) has shown promise in other pathosystems but has...
Resource Type:: Dissertation

16S rRNA Gene Amplicon Sequencing Reveals Trends in Marine Bacterial Diversity and Taxonomic Composition in Natural and Human-built Systems

Creator:: Morelan, Ian A.
Abstract:: Bacteria are abundant in marine environments. They play important roles in nutrient cycling and form symbiotic interactions with eukaryotes. However, the vast majority of bacterial taxa are difficult to maintain in laboratory cultures, meaning that most microbiological research of the past century has focused on a small subset of bacteria....
Resource Type:: Dissertation

Freshwater prokaryotic and eukaryotic diversity of the Oregon Willamette River basin

Creator:: Hoyle, Marilee C.
Abstract:: The wellbeing of the Willamette basin in Oregon depends on the river ecosystem’s microbial communities, which control primary production and the biological processing of nutrients, pollutants, and organic matter. Yet, only a few studies have investigated the diversity of the microbial communities of the Willamette basin. This paper examines how...
Resource Type:: Honors College Thesis
Full Text:: Microbiology, 8. doi:10.3389/fmicb.2017.00882 Dumestre, J., Casamayor, E., Massana, R., & Pedrós-Alió

ScholarsArchive@OSU

Establishment and dynamics of methane-oxidizing microbial communities in marine sediments

The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Arctic Lagoons

Tracking Bacterial and Viral Shifts in Three Organisms to Shed Light on the Complex Role of Microbes in Coral Reef Health

Bacterial and Host Factors Contributing to Mycobacterium avium subspecies paratuberculosis Persistent Infection

Ecophylogenetic Characterization of the Gut Microbiome of At-risk Companion and Food Animals

Effects of Anthropogenic Stressors on Seagrass and Coral Microbiomes

Novel Copper and Iron Complexes along the Oregon Coastal Upwelling Margin

Host-Induced Gene Silencing in Black Cottonwood for Control of Septoria Canker: Efficacy and Non-Target Impacts

16S rRNA Gene Amplicon Sequencing Reveals Trends in Marine Bacterial Diversity and Taxonomic Composition in Natural and Human-built Systems

Freshwater prokaryotic and eukaryotic diversity of the Oregon Willamette River basin

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