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  • Deep Learning for Human and Biological Languages

    Creator:
    Hong, Junki
    Abstract:
    We explore the application of deep learning to the disparate fields of natural language processing and computational biology. Both the sentences uttered by humans as well as the RNA and protein sequences found within the cells of their bodies can be considered formal languages in computer science, as sets of...
    Resource Type:
    Dissertation
    Full Text:
    Human and Biological Languages Abstract approved: David Hendrix and Liang Huang We explore the

  • Protein Disorder in the Evolution of Dynein Regulation

    Creator:
    Jie, Jing
    Abstract:
    Intrinsically disordered proteins (IDP) are a class of proteins that lack a three-dimensional structure and their prevalence and diverse functions in the cell have only been discovered relatively recently. The intermediate chain (IC) subunit of the microtubule motor protein complex dynein contains an N-terminal disordered region, N-IC, which is central...
    Resource Type:
    Dissertation
    Full Text:
    AN ABSTRACT OF THE DISSERTATION OF Jing Jie for the

  • Channel estimation and data detection for mobile MIMO OFDM systems

    Creator:
    Gao, Jie
    Abstract:
    Designing spectral efficient, high-speed wireless links that offer high quality- of-service and range capability has been a critical research and engineering challenge. In this thesis, we mainly address the complexity and performance issues of channel estimation and data detection in multiple-input multiple-output (MIMO) orthogonal frequency division multiplexing (OFDM) systems over...
    Resource Type:
    Dissertation
    Full Text:
    AN ABSTRACT OF THE THESIS OF Jie Gao for the degree of Doctor of

  • Space time coding in MIMO systems

    Creator:
    Xian, Liang
    Abstract:
    Multiple-input multiple-output (MIMO) antenna technology is promising for high-speed wireless communications without increasing the transmission band- width. Space time coding (STC) is a scheme that employs multiple antennas to increase transmission rate or to improve transmission quality. STC is used widely in mobile cellular networks, wireless local area networks (WLAN)...
    Resource Type:
    Dissertation
    Full Text:
    AN ABSTRACT OF THE THESIS OF Liang Xian for the degree of Doctor of

  • Linear-time Algorithms for RNA Folding: Partition Function, Stochastic Sampling and RNA-RNA Interaction

    Creator:
    Zhang, He
    Abstract:
    RNAs play important roles in the central dogma of molecular biology, and are involved in multiple biology processes such as chromatin modification, transcriptional interference and translation initiation. The functions of RNAs, especially non-coding RNAs, are highly related to its secondary structures, therefore computational methods for RNA structure prediction are of...
    Resource Type:
    Dissertation
    Full Text:
    approved: Liang Huang Li-Jing Cheng RNAs play important roles in the central dogma of molecular biology

  • Machine Learning Methods for Computational Sustainability

    Creator:
    Liu, Liping
    Abstract:
    Maintaining the sustainability of the earth’s ecosystems has attracted much attention as these ecosystems are facing more and more pressure from human activities. Machine learning can play an important role in promoting sustainability as a large amount of data is being collected from ecosystems. There are at least three important...
    Resource Type:
    Dissertation
    Full Text:
    ∈ Bi, its true label yi,j ∈ Yi. The work of Jie et al. [32] and Briggs et al. [13] learn classifiers

  • Learning with Limited Labeled Data in Natural Language Processing

    Creator:
    Obeidat, Rasha
    Abstract:
    The advent of deep learning models leads to a substantial improvement in a wide range of NLP tasks, achieving state-of-art performances without any hand-crafted features. However, training deep models requires a massive amount of labeled data. Labeling new data as a new task or domain emerges consumes time and efforts...
    Resource Type:
    Dissertation
    Full Text:
    . Liang Huang, Prof Stephen A Ramsey, Prof. Brett Tyler, and Prof. Sushma Naithani, for their insight

  • Improving and Understanding Deep Models for Natural Language Comprehension

    Creator:
    Ghaeini, Reza
    Abstract:
    Natural Language Comprehension is a challenging domain of Natural Language Processing. To improve a model’s language comprehension/understanding, one approach would be to enrich the structure of the model to enhance its capability in learning the latent rules of the language. In this dissertation, we will first introduce several deep models...
    Resource Type:
    Dissertation
    Full Text:
    . Prasad Tadepalli, Dr. Liang Huang, Dr. David Hendrix, and Dr. Kipp Shearman, for all of their invaluable

  • Vitamin E Protects Developmental Gene Expression and Metabolic Networks in Zebrafish Embryos

    Creator:
    Head, Brian A.
    Abstract:
    Vitamin E (VitE) is necessary for vertebrate embryonic development. VitE prevents lipid peroxidation (LPO), which requires detoxification by cellular antioxidant systems subsequently involving reducing power derived from energy metabolism. Thus, VitE protects metabolic networks in the developing embryo and the integrated gene expression networks compensating for and impaired by LPO-induced...
    Resource Type:
    Dissertation

  • Coulomb Explosion in Moderately Intense Nanosecond Laser Fields

    Creator:
    Yao, Yuzhong
    Abstract:
    In this dissertation, I present experimental observations of multiply charged atomic ions (MCAI) generated from interactions of atomic/molecular clusters with moderately intense nanosecond laser pulses. This process is also known as Coulomb explosion (CE) and it has been extensively studied in intense laser fields using ultrashort pulses. Several prevailing theories...
    Resource Type:
    Dissertation
    Full Text:
    to thank Dr. Jie Zhang and Mr. William Freund in assisting me on designs and constructions of the