Index Catalog // ScholarsArchive@OSU

OSU Libraries & Press Open Access Fund Report

Creator:: Boock, Michael
Abstract:: OSU Libraries & Press initiated a pilot Open Access Fund in April 2015 that paid for open access article processing charges for OSU authors who met award criteria. The purpose of the fund was to heighten the visibility and accessibility of OSU scholarship and to support faculty and their student...
Resource Type:: Technical Report
Full Text:: OSU Libraries & Press Open Access Fund Report February 16, 2016 Michael

Linked Data Report and Recommendations for Oregon State University Libraries and Press

Creator:: Boock, Michael
Abstract:: Executive Summary: Oregon State University Libraries and Press (OSULP) demonstrates the value of openness in a variety of ways. We worked with faculty to pass an open access policy to provide the broadest possible access to university scholarship. We teach faculty and students to use data tools that promote the...
Resource Type:: Technical Report
Full Text:: Michael Boock The author would like to thank Terry Reese (Associate Professor / Head, Digital

Interaction-induced conducting–non-conducting transition of ultra-cold atoms in one-dimensional optical lattices

Creator:: Chien, Chih-Chun, Gruss, Daniel, Di Ventra, Massimiliano, and Zwolak, Michael
Abstract:: The study of time-dependent, many-body transport phenomena is increasingly within reach of ultra-cold atom experiments. We show that the introduction of spatially inhomogeneous interactions, e.g., generated by optically controlled collisions, induce negative differential conductance in the transport of atoms in one-dimensional optical lattices. Specifically, we simulate the dynamics of interacting...
Resource Type:: Article
Full Text:: , Massimiliano Di Ventra3 and Michael Zwolak2,4 1 Theoretical Division, Los Alamos National Laboratory, MS B213

Genetic Diversity and Population Parameters of Sea Otters, Enhydra lutris, before Fur Trade Extirpation from 1741–1911

Creator:: Larson, Shawn, Jameson, Ron, Etnier, Michael, Jones, Terry, and Hall, Roberta
Abstract:: All existing sea otter, Enhydra lutris, populations have suffered at least one historic population bottleneck stemming from the fur trade extirpations of the eighteenth and nineteenth centuries. We examined genetic variation, gene flow, and population structure at five microsatellite loci in samples from five pre-fur trade populations throughout the sea...
Resource Type:: Article
Full Text:: Jameson2, Michael Etnier3, Terry Jones4, Roberta Hall5 1 Research/Animal Health, Seattle Aquarium, Seattle

Effects of Cu/Zn Superoxide Dismutase (sod1) Genotype and Genetic Background on Growth, Reproduction and Defense in Biomphalaria glabrata

Creator:: Bonner, Kaitlin M., Bayne, Christopher J., Larson, Maureen K., and Blouin, Michael S.
Abstract:: Resistance of the snail Biomphalaria glabrata to the trematode Schistosoma mansoni is correlated with allelic variation at copper-zinc superoxide dismutase (sod1). We tested whether there is a fitness cost associated with carrying the most resistant allele in three outbred laboratory populations of snails. These three populations were derived from the...
Resource Type:: Article
Full Text:: . Bonner*, Christopher J. Bayne, Maureen K. Larson, Michael S. Blouin Department of Zoology, Oregon State

Non-Invasive Sampling of Schistosomes from Humans Requires Correcting for Family Structure

Creator:: Steinauer, Michelle L., Christie, Mark R., Blouin, Michael S., Agola, Lelo E., Mwangi, Ibrahim N., Maina, Geoffrey M., Mutuku, Martin W., Kinuthia, Joseph M., Mkoji, Gerald M., and Loker, Eric S.
Abstract:: For ethical and logistical reasons, population-genetic studies of parasites often rely on the non-invasive sampling of offspring shed from their definitive hosts. However, if the sampled offspring are naturally derived from a small number of parents, then the strong family structure can result in biased population-level estimates of genetic parameters,...
Resource Type:: Article
Full Text:: Humans Requires Correcting for Family Structure Michelle L. Steinauer1*, Mark R. Christie2, Michael S

Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow

Creator:: O'Malley, Kathleen G., Jacobson, Dave P., Kurth, Ryon, Dill, Allen J., and Banks, Michael A.
Abstract:: Neutral genetic markers are routinely used to define distinct units within species that warrant discrete management. Human-induced changes to gene flow however may reduce the power of such an approach. We tested the efficiency of adaptive versus neutral genetic markers in differentiating temporally divergent migratory runs of Chinook salmon (Oncorhynchus...
Resource Type:: Article
Full Text:: gene flow Kathleen G. O’Malley,1 Dave P. Jacobson,1 Ryon Kurth,2 Allen J. Dill3 and Michael A. Banks1

Regulation of Motility of Myogenic Cells in Filling Limb Muscle Anlagen by Pitx2

Creator:: Campbell, Adam L., Shih, Hung-Ping, Xu, Jun, Gross, Michael K., and Kioussi, Chrissa
Abstract:: Cells of the ventrolateral dermomyotome delaminate and migrate into the limb buds where they give rise to all muscles of the limbs. The migratory cells proliferate and form myoblasts, which withdraw from the cell cycle to become terminally differentiated myocytes. The myogenic lineage colonizes pre-patterned regions to form muscle anlagen...
Resource Type:: Article
Full Text:: Filling Limb Muscle Anlagen by Pitx2 Adam L. Campbell1, Hung-Ping Shih2, Jun Xu1, Michael K. Gross1

What the Inbred Scandinavian Wolf Population Tells Us about the Nature of Conservation

Creator:: Räikkönen, Jannikke, Vucetich, John A., Vucetich, Leah M., Peterson, Rolf O., and Nelson, Michael P.
Abstract:: The genetic aspects of population health are critical, but frequently difficult to assess. Of concern has been the genetic constitution of Scandinavian wolves (Canis lupus), which represent an important case in conservation. We examined the incidence of different congenital anomalies for 171 Scandinavian wolves, including the immigrant founder female, born...
Resource Type:: Article
Full Text:: , Rolf O. Peterson2, Michael P. Nelson3 1 Swedish Museum of Natural History, Department of Contaminant

Comparison of fixatives and fixation time for PCR detection of Mycobacterium in zebrafish Danio rerio

Creator:: Peterson, Tracy S., Kent, Michael L., Ferguson, Jayde A., Watral, Virginia G., and Whipps, Christopher M.
Abstract:: Mycobacteriosis is a common disease of laboratory zebrafish Danio rerio. Different infection patterns occur in zebrafish depending on mycobacterial species. Mycobacterium marinum and M. haemophilum produce virulent infections associated with high mortality, whereas M. chelonae is more widespread and is not associated with high mortality. Identification of mycobacterial infections to...
Resource Type:: Article
Full Text:: time for PCR detection of Mycobacterium in zebrafish Danio rerio Tracy S. Peterson1,*, Michael L

Loss of Abdominal Muscle in Pitx2 Mutants Associated with Altered Axial Specification of Lateral Plate Mesoderm

Creator:: Eng, Diana, Ma, Hsiao-Yen, Xu, Jun, Shih, Hung-Ping, Gross, Michael K., and Kiouss, Chrissa
Abstract:: Correction 17 Oct 2012: Eng D, Ma HY, Xu J, Shih HP, Gross MK, et al. (2012) Correction: Loss of Abdominal Muscle in Pitx2 Mutants Associated with Altered Axial Specification of Lateral Plate Mesoderm. PLOS ONE 7(10): 10.1371/annotation/c980d5a1-1899-4d30-af7b-573d4049cf4b
Resource Type:: Article
Full Text:: , Hung-Ping Shih2, Michael K. Gross1*, Chrissa Kiouss1* 1 Department of Pharmaceutical Sciences, College

Heterokaryon Incompatibility Is Suppressed Following Conidial Anastomosis Tube Fusion in a Fungal Plant Pathogen

Creator:: Ishikawa, Francine H., Souza, Elaine A., Shoji, Jun-ya, Connolly, Lanelle, Freitag, Michael, Read, Nick D., and Roca, M. Gabriela
Abstract:: It has been hypothesized that horizontal gene/chromosome transfer and parasexual recombination following hyphal fusion between different strains may contribute to the emergence of wide genetic variability in plant pathogenic and other fungi. However, the significance of vegetative (heterokaryon) incompatibility responses, which commonly result in cell death, in preventing these processes...
Resource Type:: Article
Full Text:: . Souza1*, Jun-ya Shoji3, Lanelle Connolly2, Michael Freitag2, Nick D. Read3, M. Gabriela Roca3 1

Population-Specific Regulation of Chmp2b by Lbx1 during Onset of Synaptogenesis in Lateral Association Interneurons

Creator:: Xu, Jun, Nonogaki, Mariko, Madhira, Ravi, Ma, Hsiao-Yen, Hermanson, Ola, Kioussi, Chrissa, and Gross, Michael K.
Abstract:: Chmp2b is closely related to Vps2, a key component of the yeast protein complex that creates the intralumenal vesicles of multivesicular bodies. Dominant negative mutations in Chmp2b cause autophagosome accumulation and neurodegenerative disease. Loss of Chmp2b causes failure of dendritic spine maturation in cultured neurons. The homeobox gene Lbx1 plays...
Resource Type:: Article
Full Text:: Madhira1, Hsiao-Yen Ma1, Ola Hermanson2, Chrissa Kioussi1, Michael K. Gross1* 1 Department of

Biotic and Human Vulnerability to Projected Changes in Ocean Biogeochemistry over the 21st Century

Creator:: Mora, Camilo, Wei, Chih-Lin, Rollo, Audrey, Amaro, Teresa, Baco, Amy R., Billett, David, Bopp, Laurent, Chen, Qi, Collier, Mark, Danovaro, Roberto, Gooday, Andrew J., Grupe, Benjamin M., Halloran, Paul R., Ingels, Jeroen, Jones, Daniel O. B., Levin, Lisa A., Nakano, Hideyuki, Norling, Karl, Ramirez-Llodra, Eva, Rex, Michael, Ruhl, Henry A., Smith, Craig R., Sweetman, Andrew K., Thurber, Andrew R., Tjiputra, Jerry F., Usseglio, Paolo, Watling, Les, Wu, Tongwen, and Yasuhara, Moriaki
Abstract:: Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader...
Resource Type:: Article

Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO₂-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis

Creator:: Vidal-Dupiol, Jeremie, Zoccola, Didier, Tambutté, Eric, Grunau, Christoph, Cosseau, Céline, Smith, Kristina M., Freitag, Michael, Dheilly, Nolwenn M., Allemand, Denis, and Tambutté, Sylvie
Abstract:: Since the preindustrial era, the average surface ocean pH has declined by 0.1 pH units and is predicted to decline by an additional 0.3 units by the year 2100. Although subtle, this decreasing pH has profound effects on the seawater saturation state of carbonate minerals and is thus predicted to...
Resource Type:: Article
Full Text:: , Kristina M. Smith4, Michael Freitag4, Nolwenn M. Dheilly2,3, Denis Allemand1, Sylvie Tambutté1 1 Centre

MTB-3, a Microtubule Plus-End Tracking Protein (+TIP) of Neurospora crassa

Creator:: Mourino-Perez, Rosa R., Linacre-Rojas, Lorena P., Roman-Gavilanes, Ariana I., Lew, Thomas K., Callejas-Negrete, Olga A., Roberson, Robert W., and Freitag, Michael
Abstract:: The microtubule (MT) "plus end" constitutes the platform for the accumulation of a structurally and functionally diverse group of proteins, collectively called "MT plus-end tracking proteins" (+TIPs). +TIPs control MT dynamics and link MTs to diverse sub-cellular structures. Neurospora crassa MicroTubule Binding protein-3 (MTB-3) is the homolog of yeast EB1,...
Resource Type:: Article
Full Text:: -Gavilanes1, Thomas K. Lew2, Olga A. Callejas-Negrete1, Robert W. Roberson3, Michael Freitag2 1 Departamento

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

Creator:: Traeger, Stefanie, Altegoer, Florian, Freitag, Michael, Gabaldon, Toni, Kempken, Frank, Kumar, Abhishek, Marcet-Houben, Marina, Poggeler, Stefanie, Stajich, Jason E., and Nowrousian, Minou
Abstract:: Fungi are a large group of eukaryotes found in nearly all ecosystems. More than 250 fungal genomes have already been sequenced, greatly improving our understanding of fungal evolution, physiology, and development. However, for the Pezizomycetes, an early-diverging lineage of filamentous ascomycetes, there is so far only one genome available, namely...
Resource Type:: Article
Full Text:: , Michael Freitag2, Toni Gabaldon3,4, Frank Kempken5, Abhishek Kumar5, Marina Marcet-Houben3,4, Stefanie

Catching the Right Wave: Evaluating Wave Energy Resources and Potential Compatibility with Existing Marine and Coastal Uses

Creator:: Kim, Choong-Ki, Toft, Jodie E., Papenfus, Michael, Verutes, Gregory, Guerry, Anne D., Ruckelshaus, Marry H., Arkema, Katie K., Guannel, Gregory, Wood, Spencer A., Bernhardt, Joanna R., Tallis, Heather, Plummer, Mark L., Halpern, Benjamin S., Pinsky, Malin L., Beck, Michael W., Chan, Francis, Chan, Kai M. A., Levin, Phil S., and Polasky, Stephen
Abstract:: Many hope that ocean waves will be a source for clean, safe, reliable and affordable energy, yet wave energy conversion facilities may affect marine ecosystems through a variety of mechanisms, including competition with other human uses. We developed a decision-support tool to assist siting wave energy facilities, which allows the...
Resource Type:: Article
Full Text:: *, Jodie E. Toft1, Michael Papenfus1,3, Gregory Verutes1, Anne D. Guerry1, Marry H. Ruckelshaus1, Katie K

Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage

Creator:: Bonito, Gregory, Smith, Matthew E., Nowak, Michael, Healy, Rosanne A., Guevara, Gonzalo, Cazares, Efren, Kinoshita, Akihiko, Nouhra, Eduardo R., Domınguez, Laura S., Tedersoo, Leho, Murat, Claude, Wang, Yun, Arroyo Moreno, Baldomero, Pfister, Donald H., Nara, Kazuhide, Zambonelli, Alessandra, Trappe, James M., and Vilgalys, Rytas
Abstract:: Truffles have evolved from epigeous (aboveground) ancestors in nearly every major lineage of fleshy fungi. Because accelerated rates of morphological evolution accompany the transition to the truffle form, closely related epigeous ancestors remain unknown for most truffle lineages. This is the case for the quintessential truffle genus Tuber, which includes...
Resource Type:: Article
Full Text:: Bonito1*, Matthew E. Smith14, Michael Nowak13, Rosanne A. Healy2, Gonzalo Guevara3, Efren Cázares4

Factors affecting female space use in ten populations of prairie chickens

Creator:: Winder, Virginia L., Carrlson, Kaylan M., Gregory, Andrew J., Hagen, Christian A., Haukos, David A., Kesler, Dylan C., Larsson, Lena C., Matthews, Ty W., McNew, Lance B., Patten, Michael A., Pitman, Jim C., Powell, Larkin A., Smith, Jennifer A., Thompson, Tom, Wolfe, Donald H., and Sandercock, Brett K.
Abstract:: Conservation of wildlife depends on an understanding of the interactions between animal movements and key landscape factors. Habitat requirements of wide-ranging species often vary spatially, but quantitative assessment of variation among replicated studies at multiple sites is rare. We investigated patterns of space use for 10 populations of two closely...
Resource Type:: Article
Full Text:: ,8 MICHAEL A. PATTEN,9 JIM C. PITMAN,10 LARKIN A. POWELL,7 JENNIFER A. SMITH,7,15 TOM THOMPSON,11

ScholarsArchive@OSU

OSU Libraries & Press Open Access Fund Report

Linked Data Report and Recommendations for Oregon State University Libraries and Press

Interaction-induced conducting–non-conducting transition of ultra-cold atoms in one-dimensional optical lattices

Genetic Diversity and Population Parameters of Sea Otters, Enhydra lutris, before Fur Trade Extirpation from 1741–1911

Effects of Cu/Zn Superoxide Dismutase (sod1) Genotype and Genetic Background on Growth, Reproduction and Defense in Biomphalaria glabrata

Non-Invasive Sampling of Schistosomes from Humans Requires Correcting for Family Structure

Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow

Regulation of Motility of Myogenic Cells in Filling Limb Muscle Anlagen by Pitx2

What the Inbred Scandinavian Wolf Population Tells Us about the Nature of Conservation

Comparison of fixatives and fixation time for PCR detection of Mycobacterium in zebrafish Danio rerio

Loss of Abdominal Muscle in Pitx2 Mutants Associated with Altered Axial Specification of Lateral Plate Mesoderm

Heterokaryon Incompatibility Is Suppressed Following Conidial Anastomosis Tube Fusion in a Fungal Plant Pathogen

Population-Specific Regulation of Chmp2b by Lbx1 during Onset of Synaptogenesis in Lateral Association Interneurons

Biotic and Human Vulnerability to Projected Changes in Ocean Biogeochemistry over the 21st Century

Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO₂-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis

MTB-3, a Microtubule Plus-End Tracking Protein (+TIP) of Neurospora crassa

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

Catching the Right Wave: Evaluating Wave Energy Resources and Potential Compatibility with Existing Marine and Coastal Uses

Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage

Factors affecting female space use in ten populations of prairie chickens

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