Index Catalog // ScholarsArchive@OSU

OSU Cascades registration handbook 2017-2018

Creator:: Oregon State University. Registrar's Office
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Full Text:: . Step 3—Register on the Web via MyOSU § Use a computer and go to MyOSU, https://myosu.oregonstate.edu

OSU Cascades registration handbook 2015-2016

Creator:: Oregon State University. Registrar's Office
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Full Text:: before 1997, you are not required to send OSU-Cascades your high school transcript. Step 3: Apply for

OSU Cascades registration handbook 2011-2012

Creator:: Oregon State University. Registrar's Office
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Full Text:: sections in case the § one you want is not available. Step 3—Register on the Web Use a computer (your own

OSU Cascades registration handbook 2010-2011

Creator:: Oregon State University. Registrar's Office
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Full Text:: \osucascades 1. 7. 2. 4. 5. 6. 3. 8. REGISTRATION HANDBOOK 2010–2011OSU-CASCADES 1 Welcome to the

OSU Cascades registration handbook 2016-2017

Creator:: Oregon State University. Registrar's Office
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Full Text:: school before 1997, you are not required to send OSU-Cascades your high school transcript. Step 3

OSU Cascades registration handbook 2012-2013

Creator:: Oregon State University. Registrar's Office
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Full Text:: transcript. Step 3: Apply for Admission to OSU-Cascades Complete the online application at

OSU Cascades registration handbook 2013-2014

Creator:: Oregon State University. Registrar's Office
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Full Text:: high school transcript. Step 3: Apply for Admission to OSU-Cascades Complete the online application

OSU Cascades registration handbook 2014-2015

Creator:: Oregon State University. Registrar's Office
Resource Type:: Other
Full Text:: not required to send OSU-Cascades your high school transcript. Step 3: Apply for Admission to OSU

Short-term responses of native bees to livestock and implications for managing ecosystem services in grasslands

Creator:: Kimoto, Chiho, DeBano, Sandra J., Thorp, Robbin W., Taylor, Robert V., Schmalz, Heidi, DelCurto, Timothy, Johnson, Tracey, Kennedy, Patricia L., and Rao, Sujaya
Abstract:: Rangelands are significant providers of ecosystem services in agroecosystems world‐wide. Yet few studies have investigated how different intensities of livestock grazing impact one important provider of these ecosystem services—native bees. We conducted the first large‐scale manipulative study on the effect of a gradient of livestock grazing intensities on native bees...
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Full Text:: ,1 ROBBIN W. THORP,2 ROBERT V. TAYLOR,3 HEIDI SCHMALZ,3 TIMOTHY DELCURTO,4 TRACEY JOHNSON,5,7

Comparison of fixatives and fixation time for PCR detection of Mycobacterium in zebrafish Danio rerio

Creator:: Peterson, Tracy S., Kent, Michael L., Ferguson, Jayde A., Watral, Virginia G., and Whipps, Christopher M.
Abstract:: Mycobacteriosis is a common disease of laboratory zebrafish Danio rerio. Different infection patterns occur in zebrafish depending on mycobacterial species. Mycobacterium marinum and M. haemophilum produce virulent infections associated with high mortality, whereas M. chelonae is more widespread and is not associated with high mortality. Identification of mycobacterial infections to...
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Full Text:: . marinum, and then preserved in 10% neutral buffered formalin or Dietrich’s fixative for 3, 7, 21, and 45 d

Circumpolar Diversity and Geographic Differentiation of mtDNA in the Critically Endangered Antarctic Blue Whale (Balaenoptera musculus intermedia)

Creator:: Sremba, Angela L., Hancock-Hanser, Brittany, Branch, Trevor A., LeDuc, Rick L., and Baker, C. Scott
Abstract:: The Antarctic blue whale (Balaenoptera musculus intermedia) was hunted to near extinction between 1904 and 1972, declining from an estimated initial abundance of more than 250,000 to fewer than 400. Here, we describe mtDNA control region diversity and geographic differentiation in the surviving population of the Antarctic blue whale, using...
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Full Text:: , La Jolla, California, United States of America, 3 School of Aquatic and Fishery Sciences, University

Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider (TM)

Creator:: Klinck, Holger, Mellinger, David K., Klinck, Karolin, Bogue, Neil M., Luby, James C., Jump, William A., Shilling, Geoffrey B., Litchendorf, Trina, Wood, Angela S., Schorr, Gregory S., and Baird, Robin W.
Abstract:: Correction 10 Aug 2012: Klinck H, Mellinger DK, Klinck K, Bogue NM, Luby JC, et al. (2012) Correction: Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider™. PLOS ONE 7(8): 10.1371/annotation/57ad0b82-87c4-472d-b90b-b9c6f84947f8.
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Full Text:: % echosounder signals. The results of the manual data analysis are shown in Figs. 2 and 3. Fig. 2 shows the

Density-Dependent Growth in Invasive Lionfish (Pterois volitans)

Creator:: Benkwitt, Cassandra E.
Abstract:: Direct demographic density dependence is necessary for population regulation and is a central concept in ecology, yet has not been studied in many invasive species, including any invasive marine fish. The red lionfish (Pterois volitans) is an invasive predatory marine fish that is undergoing exponential population growth throughout the tropical...
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Full Text:: native coral-reef fish species and suggests that for the foreseeable future manual removals may be the

Footprint of Positive Selection in Treponema pallidum subsp. pallidum Genome Sequences Suggests Adaptive Microevolution of the Syphilis Pathogen

Creator:: Giacani, Lorenzo, Chattopadhyay, Sujay, Centurion-Lara, Arturo, Jeffrey, BrendanM., Le, Hoavan T., Molini, Barbara J., Lukehart, Sheila A., Sokurenko, Evgeni V., and Rockey, Daniel D.
Abstract:: In the rabbit model of syphilis, infection phenotypes associated with the Nichols and Chicago strains of Treponema pallidum (T. pallidum), though similar, are not identical. Between these strains, significant differences are found in expression of, and antibody responses to some candidate virulence factors, suggesting the existence of functional genetic differences...
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Full Text:: , University of Washington, Seattle, Washington, United States of America, 3 Department of Biomedical Sciences

Enhancing the T-shaped learning profile when teaching hydrology using data, modeling, and visualization activities

Creator:: Sanchez, C. A., Ruddell, B. L., Schiesser, R., and Merwade, V.
Abstract:: Previous research has suggested that the use of more authentic learning activities can produce more robust and durable knowledge gains. This is consistent with calls within civil engineering education, specifically hydrology, that suggest that curricula should more often include professional perspective and data analysis skills to better develop the ‘T-shaped’...
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Full Text:: Data, Modeling, and Visualization Activities. 2 3 C.A. Sanchez1, B.L. Ruddell2, R. Schiesser3 and

Enhancing the T-shaped learning profile when teaching hydrology using data, modeling, and visualization activities

Creator:: Sanchez, Christopher A., Ruddell, Benjamin L., Ruddell, Benjamin L., and Merwade, Venkatesh
Abstract:: Previous research has suggested that the use of more authentic learning activities can produce more robust and durable knowledge gains. This is consistent with calls within civil engineering education, specifically hydrology, that suggest that curricula should more often include professional perspective and data analysis skills to better develop the "T-shaped"...
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Full Text:: instructor and roughly 3 hours of student effort to complete. A paper lab activity (Lab 9 in Schiesser

Density Can Be Misleading for Low-Density Species: Benefits of Passive Acoustic Monitoring

Creator:: Rogers, Tracey L., Ciaglia, Michaela B., Klinck, Holger, and Southwell, Colin
Abstract:: Climate-induced changes may be more substantial within the marine environment, where following ecological change is logistically difficult, and typically expensive. As marine animals tend to produce stereotyped, long-range signals, they are ideal for repeatable surveying. In this study we illustrate the potential for calling rates to be used as a...
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Full Text:: , Hatfield Marine Science Center, Newport, Oregon, United States of America, 3 Australian Antarctic Division

Five new species and three new subspecies of Erebidae and Noctuidae (Insecta, Lepidoptera) from Northwestern North America, with notes on Chytolita Grote (Erebidae) and Hydraecia Guenée (Noctuidae)

Creator:: Crabo, Lars G., Davis, Melanie, Hammond, Paul, Mustelin, Tomas, and Shepard, Jon
Abstract:: Several taxonomic issues in the moth families Erebidae and Noctuidae are addressed for Northwestern North America. Drasteria parallela Crabo & Mustelin and Cycnia oregonensis tristis Crabo in the Erebidae and Eudryas brevipennis bonneville Shepard & Crabo, Resapamea diluvius Crabo, Resapamea angelika Crabo, Resapamea mammuthus Crabo, Fishia nigrescens Hammond & Crabo,...
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Full Text:: ., Bellingham, Washington 98225-6302 USA 2 Western Washington University, Belling- ham, Washington USA 3

Comparative Composition, Diversity and Trophic Ecology of Sediment Macrofauna at Vents, Seeps and Organic Falls

Creator:: Bernardino, Angelo F., Levin, Lisa A., Thurber, Andrew R., and Smith, Craig R.
Abstract:: Sediments associated with hydrothermal venting, methane seepage and large organic falls such as whale, wood and plant detritus create deep-sea networks of soft-sediment habitats fueled, at least in part, by the oxidation of reduced chemicals. Biological studies at deep-sea vents, seeps and organic falls have looked at macrofaunal taxa, but...
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Full Text:: , Universidade Federal do Espı́rito Santo, Goiabeiras, Vitória, Esp 3 College of Earth, Ocean, and 4

Evaluating testcross performance and genetic divergence of lines derived from reciprocal tropical maize composites

Creator:: Menkir, Abebe, Kling, Jennifer G., Anjorin, Bamyo, Ladejobi, Funmilayo, and Gedil, Melaku
Abstract:: The development of hybrids with enhanced expression of heterosis depends on the genetic background of the source population and the effectiveness of a breeding scheme used to identify and use divergent inbred lines with good combining ability. The present study was conducted to examine the potential of improved tropical reciprocal...
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Full Text:: -derived lines 3 Maydica electronic publication - 2015 lines derived from TZL COMP4 C3 were planted in

Accelerated Identification of Proteins by Mass Spectrometry by Employing Covalent Pre-Gel Staining with Uniblue A

Creator:: Mata-Gomez, Marco A., Yasui, Matthew T., Guerrero-Rangel, Armando, Valdes-Rodrıguez, Silvia, and Winkler, Robert
Abstract:: Background: The identification of proteins by mass spectrometry is a standard method in biopharmaceutical quality control and biochemical research. Prior to identification by mass spectrometry, proteins are usually pre-separated by electrophoresis. However, current protein staining and de-staining protocols are tedious and time consuming, and therefore prolong the sample preparation time...
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Full Text:: ONE | www.plosone.org 3 February 2012 | Volume 7 | Issue 2 | e31438 Automated and manual MS/MS data

Intra‐ and inter‐annual variation in gray whale body condition on a foraging ground

Creator:: Soledade Lemos, Leila, Burnett, Jonathan D., Chandler, Todd E., Sumich, James L., and Torres, Leigh G.
Abstract:: Baleen whales store energy gained on foraging grounds to support reproduction and other metabolic needs while fasting for long periods during migration. Whale body condition can be used to monitor foraging success, and thus better understand and anticipate individual‐ and population‐level trends in reproduction and survival. We assessed the body...
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Full Text:: foraging ground LEILA SOLEDADE LEMOS ,1,� JONATHAN D. BURNETT ,2 TODD E. CHANDLER,1 JAMES L. SUMICH ,3

A novel myxozoan parasite of terrestrial mammals: description of Soricimyxum minuti sp n. (Myxosporea) in pygmy shrew Sorex minutus from Hungary

Creator:: Székely, Csaba, Cech, Gábor, Atkinson, Stephen D., Molnár, Kálmán, Egyed, László, and Gubányi, András
Abstract:: As part of a biodiversity study in northwestern Hungary, we conducted a parasitological survey of small mammals. In both common shrews (Sorex araneus Linnaeus) and pygmy shrews (Sorex minutus Linnaeus), we found myxospores of a species of Soricimyxum Prunescu, Prunescu, Pucek et Lom, 2007 (Myxosporea) and plasmodia in the bile...
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Full Text:: , Hungary; 2 Department of Microbiology, Oregon State University, Corvallis, Oregon, USA; 3 Department of

A first chronology for the North Greenland Eemian Ice Drilling (NEEM) ice core

Creator:: Rasmussen, S. O., Abbott, P. M., Blunier, T., Bourne, A. J., Brook, Edward J., Buchardt, S. L., Buizert, Christo, Chappellaz, J., Clausen, H. B., Cook, E., Dahl-Jensen, D., Davies, S. M., Guillevic, M., Kipfstuhl, S., Laepple, T., Seierstad, I. K., Severinghaus, J. P., Steffensen, J. P., Stowasser, C., Svensson, A., Vallelonga, P., Vinther, B. M., Wilhelms, F., and Winstrup, M.
Abstract:: A stratigraphy-based chronology for the North Greenland Eemian Ice Drilling (NEEM) ice core has been derived by transferring the annual layer counted Greenland Ice Core Chronology 2005 (GICC05) and its model extension (GICC05modelext) from the NGRIP core to the NEEM core using 787 match points of mainly volcanic origin identified...
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Full Text:: identification in the NEEM core may be undertaken either by the manual identification of annual layers as

Utility of a Work Process Classification System for characterizing non-fatal injuries in the Alaskan commercial fishing industry

Creator:: Syron, Laura N., Lucas, Devin L., Bovbjerg, Viktor E., Bethel, Jeffrey W., and Kincl, Laurel D.
Abstract:: Background. The US commercial fishing industry is hazardous, as measured by mortality data. However, research on non-fatal injuries is limited. Non-fatal injuries constitute the majority of occupational injuries and can result in workers' lowered productivity and wages, lost quality of life, and disability. In the United States, a Work Process...
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Full Text:: the nation (3). Results from the few studies that have addressed non-fatal injuries in the commercial

The stability and calibration of water vapor isotope ratio measurements during long-term deployments

Creator:: Bailey, A., Noone, D., Berkelhammer, M., Steen-Larsen, H. C., and Sato, P.
Abstract:: With the recent advent of commercial laser absorption spectrometers, field studies measuring stable isotope ratios of hydrogen and oxygen in water vapor have proliferated. These pioneering analyses have provided invaluable feedback about best strategies for optimizing instrumental accuracy, yet questions still remain about instrument performance and calibration approaches for multi-year...
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Full Text:: period, this study does not assess similarities or differences15 between this manual calibration system

Climate and Demography Dictate the Strength of Predator-Prey Overlap in a Subarctic Marine Ecosystem

Creator:: Hunsicker, Mary E., Ciannelli, Lorenzo, Bailey, Kevin M., Zador, Stephani, and Stige, Leif Christian
Abstract:: There is growing evidence that climate and anthropogenic influences on marine ecosystems are largely manifested by changes in species spatial dynamics. However, less is known about how shifts in species distributions might alter predator-prey overlap and the dynamics of prey populations. We developed a general approach to quantify species spatial...
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Full Text:: , Washington, United States of America, 3 Centre for Ecological and Evolutionary Synthesis, Department of

What the Inbred Scandinavian Wolf Population Tells Us about the Nature of Conservation

Creator:: Räikkönen, Jannikke, Vucetich, John A., Vucetich, Leah M., Peterson, Rolf O., and Nelson, Michael P.
Abstract:: The genetic aspects of population health are critical, but frequently difficult to assess. Of concern has been the genetic constitution of Scandinavian wolves (Canis lupus), which represent an important case in conservation. We examined the incidence of different congenital anomalies for 171 Scandinavian wolves, including the immigrant founder female, born...
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Full Text:: Technological University, Houghton, Michigan, United States of America, 3 Department of Forest Ecosystems and

Amplification and dampening of soil respiration by changes in temperature variability

Creator:: Sierra, C. A., Harmon, M. E., Thomann, E., Perakis, S. S., and Loescher, H. W.
Abstract:: Accelerated release of carbon from soils is one of the most important feedbacks related to anthropogenically induced climate change. Studies addressing the mechanisms for soil carbon release through organic matter decomposition have focused on the effect of changes in the average temperature, with little attention to changes in temperature variability....
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Full Text:: (−Ea/3 ] 0

Clostridium difficile Spore-Macrophage Interactions: Spore Survival

Creator:: Paredes-Sabja, Daniel, Cofre-Araneda, Glenda, Brito-Silva, Christian, Pizarro-Guajardo, Marjorie, and Sarker, Mahfuzur R.
Abstract:: Background: Clostridium difficile is the main cause of nosocomial infections including antibiotic associated diarrhea, pseudomembranous colitis and toxic megacolon. During the course of Clostridium difficile infections (CDI), C. difficile undergoes sporulation and releases spores to the colonic environment. The elevated relapse rates of CDI suggest that C. difficile spores has...
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Full Text:: sonicated with maximum power (20 Watts) for 10 1-min burst separated by 3 min of cooling on ice-cold water

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

Creator:: Sim, Sung-Chur, Van Deynze, Allen, Stoffel, Kevin, Douches, David S., Zarka, Daniel, Ganal, Martin W., Chetelat, Roger T., Hutton, Samuel F., Scott, John W., Gardner, Randolph G., Panthee, Dilip R., Mutschler, Martha, Myers, James R., and Francis, David M.
Abstract:: The effects of selection on genome variation were investigated and visualized in tomato using a high-density single nucleotide polymorphism (SNP) array. 7,720 SNPs were genotyped on a collection of 426 tomato accessions (410 inbreds and 16 hybrids) and over 97% of the markers were polymorphic in the entire collection. Principal...
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Full Text:: Center, University of California Davis, Davis, California, United States of America, 3 Department of Crop

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

Creator:: Dharmawardhana, Palitha, Ren, Liya, Amarasinghe, Vindhya, Monaco, Marcela, Thomason, Jim, Ravenscroft, Dean, McCouch, Susan, Ware, Doreen, and Jaiswal, Pankaj
Abstract:: Background: Functional annotations of large plant genome projects mostly provide information on gene function and gene families based on the presence of protein domains and gene homology, but not necessarily in association with gene expression or metabolic and regulatory networks. These additional annotations are necessary to understand the physiology, development...
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Full Text:: (indole-3-acetic acid) and tryptophan biosynthesis pathways in terms of stress and diurnal regulation

3,3'-Diindolylmethane Induces G₁ Arrest and Apoptosis in Human Acute T-Cell Lymphoblastic Leukemia Cells

Creator:: Shorey, Lyndsey E., Hagman, Amanda M., Williams, David E., Ho, Emily, Dashwood, Roderick H., and Benninghoff, Abby D.
Abstract:: Certain bioactive food components, including indole-3-carbinol (I3C) and 3,3'-diindolylmethane (DIM) from cruciferous vegetables, have been shown to target cellular pathways regulating carcinogenesis. Previously, our laboratory showed that dietary I3C is an effective transplacental chemopreventive agent in a dibenzo[def,p]chrysene (DBC)-dependent model of murine T-cell lymphoblastic lymphoma. The primary objective of the...
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Full Text:: Linus Pauling Institute, Oregon State University, Corvallis, Oregon, United States of America, 3

WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks

Creator:: Hanumappa, Mamatha, Preece, Justin, Elser, Justin, Nemeth, Denise, Bono, Gina, Wu, Kenny, and Jaiswal, Pankaj
Abstract:: Background: Next-generation sequencing and 'omics' platforms are used extensively in plant biology research to unravel new genomes and study their interactions with abiotic and biotic agents in the growth environment. Despite the availability of a large and growing number of genomic data sets, there are only limited resources providing highly-curated...
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Full Text:: that are expressed in seed. Hanumappa et al. Rice 2013, 6:14 Page 3 of 10 http

Mechanistic Insights into Validoxylamine A 7’-Phosphate Synthesis by VldE Using the Structure of the Entire Product Complex

Creator:: Cavalier, Michael C., Yim, Young-Sun, Asamizu, Shumpei, Neau, David, Almabruk, Khaled H., Mahmud, Taifo, and Lee, Yong-Hwan
Abstract:: The pseudo-glycosyltransferase VldE catalyzes non-glycosidic C-N coupling between an unsaturated cyclitol and a saturated aminocyclitol with the conservation of the stereochemical configuration of the substrates to form validoxylamine A 7'-phosphate, the biosynthetic precursor of the antibiotic validamycin A. To study the molecular basis of its mechanism, the three-dimensional structures of...
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Full Text:: States of America, 3 NE-CAT, Cornell University, Argonne, Illinois, United States of America Abstract

Avian Species Richness in Relation to Intensive Forest Management Practices in Early Seral Tree Plantations

Creator:: Jones, Jay E., Kroll, Andrew J., Giovanini, Jack, Duke, Steven D., Ellis, Tana M., and Betts, Matthew G.
Abstract:: •Background: Managers of landscapes dedicated to forest commodity production require information about how practices influence biological diversity. Individual species and communities may be threatened if management practices truncate or simplify forest age classes that are essential for reproduction and survival. For instance, the degradation and loss of complex diverse forest...
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Full Text:: , Weyerhaeuser NR, Federal Way, Washington, United States of America, 3 Department of Forest Ecosystems and

Heterokaryon Incompatibility Is Suppressed Following Conidial Anastomosis Tube Fusion in a Fungal Plant Pathogen

Creator:: Ishikawa, Francine H., Souza, Elaine A., Shoji, Jun-ya, Connolly, Lanelle, Freitag, Michael, Read, Nick D., and Roca, M. Gabriela
Abstract:: It has been hypothesized that horizontal gene/chromosome transfer and parasexual recombination following hyphal fusion between different strains may contribute to the emergence of wide genetic variability in plant pathogenic and other fungi. However, the significance of vegetative (heterokaryon) incompatibility responses, which commonly result in cell death, in preventing these processes...
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Full Text:: , Oregon, United States of America, 3 Fungal Cell Biology Group, Institute of Cell Biology, University of

Practical considerations for enhanced-resolution coil-wrapped distributed temperature sensing

Creator:: Hilgersom, Koen, van Emmerik, Tim, Solcerova, Anna, Berghuijs, Wouter, Selker, John, and van de Giesen, Nick
Abstract:: Fibre optic distributed temperature sensing (DTS) is widely applied in Earth sciences. Many applications require a spatial resolution higher than that provided by the DTS instrument. Measurements at these higher resolutions can be achieved with a fibre optic cable helically wrapped on a cylinder. The effect of the probe construction,...
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Full Text:: Hilgersom (k.p.hilgersom@tudelft.nl) Received: 3 January 2016 – Published in Geosci. Instrum. Method. Data

Loss of Abdominal Muscle in Pitx2 Mutants Associated with Altered Axial Specification of Lateral Plate Mesoderm

Creator:: Eng, Diana, Ma, Hsiao-Yen, Xu, Jun, Shih, Hung-Ping, Gross, Michael K., and Kiouss, Chrissa
Abstract:: Correction 17 Oct 2012: Eng D, Ma HY, Xu J, Shih HP, Gross MK, et al. (2012) Correction: Loss of Abdominal Muscle in Pitx2 Mutants Associated with Altered Axial Specification of Lateral Plate Mesoderm. PLOS ONE 7(10): 10.1371/annotation/c980d5a1-1899-4d30-af7b-573d4049cf4b
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Full Text:: . Muscles of the abdominal wall also derive from somites [3]. The SMP cells at abdominal levels delaminate

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

Creator:: Traeger, Stefanie, Altegoer, Florian, Freitag, Michael, Gabaldon, Toni, Kempken, Frank, Kumar, Abhishek, Marcet-Houben, Marina, Poggeler, Stefanie, Stajich, Jason E., and Nowrousian, Minou
Abstract:: Fungi are a large group of eukaryotes found in nearly all ecosystems. More than 250 fungal genomes have already been sequenced, greatly improving our understanding of fungal evolution, physiology, and development. However, for the Pezizomycetes, an early-diverging lineage of filamentous ascomycetes, there is so far only one genome available, namely...
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Full Text:: Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon, United States of America, 3 Centre for

Macroalgae Decrease Growth and Alter Microbial Community Structure of the Reef-Building Coral, Porites astreoides

Creator:: Thurber, Rebecca Vega, Burkepile, Deron E., Correa, Adrienne M. S., Thurber, Andrew R., Shantz, Andrew A., Welsh, Rory, Pritchard, Catharine, and Rosales, Stephanie
Abstract:: With the continued and unprecedented decline of coral reefs worldwide, evaluating the factors that contribute to coral demise is of critical importance. As coral cover declines, macroalgae are becoming more common on tropical reefs. Interactions between these macroalgae and corals may alter the coral microbiome, which is thought to play...
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Full Text:: 2) decreases in microbial taxa already present in corals, 3) establishment of new taxa to the coral

Circadian Regulation of Glutathione Levels and Biosynthesis in Drosophila melanogaster

Creator:: Beaver, Laura M., Klichko, Vladimir I., Chow, Eileen S., Kotwica-Rolinska, Joanna, Williamson, Marisa, Orr, William C., Radyuk, Svetlana N., and Giebultowicz, Jadwiga M.
Abstract:: Circadian clocks generate daily rhythms in neuronal, physiological, and metabolic functions. Previous studies in mammals reported daily fluctuations in levels of the major endogenous antioxidant, glutathione (GSH), but the molecular mechanisms that govern such fluctuations remained unknown. To address this question, we used the model species Drosophila, which has a...
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Full Text:: reverse- phase C18 Gemini-NX (3 mm, 4.66150 mm) column (Phenom- enex, Torrance, CA) with the flow rate of

A Multi-Year Longitudinal Study of Water Quality Parameters in Four Salmon-Bearing and Recreational Streams on Mount Hood, Oregon

Creator:: Wasowski, Ronald, Alexander, David, Kolmes, Steven, Banet, Nathan, Card, Amy, Haines, Morgan, Kolmes, Elijah, Northcutt, Kelly, Roemer, Derek, and Webber, Sarah
Abstract:: Four streams-Clear Fork, Lost Creek, Camp Creek and Still Creek-in northwestern Oregon's Sandy River Basin were monitored for temperature, dissolved oxygen levels, and fecal bacterial concentrations in a multi-year analysis examining stream health for recreational users and anchor habitat for Pacific Salmon. Temperatures were recorded using micro -T temperature loggers...
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Full Text:: , Portland, Oregon, United States of America, 3 Department of Fisheries and Wildlife, Oregon State

CoastColour Round Robin data sets: a database to evaluate the performance of algorithms for the retrieval of water quality parameters in coastal waters

Creator:: Nechad, B., Ruddick, K., Schroeder, T., Oubelkheir, K., Blondeau-Patissier, D., Cherukuru, N., Brando, V., Dekker, A., Clementson, L., Banks, A. C., Maritorena, S., Werdell, P. J., Sá, C., Brotas, V., Caballero de Frutos, I., Ahn, Y., Salama, S., Tilstone, G., Martinez-Vicente, V., Foley, D., McKibben, M., Nahorniak, J., Peterson, T., Siliò-Calzada, A., Röttgers, R., Lee, Z., Peters, M., and Brockmann, C.
Abstract:: The use of in situ measurements is essential in the validation and evaluation of the algorithms that provide coastal water quality data products from ocean colour satellite remote sensing. Over the past decade, various types of ocean colour algorithms have been developed to deal with the optical complexity of coastal...
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High-resolution glacial and deglacial record of atmospheric methane by continuous-flow and laser spectrometer analysis along the NEEM ice core

Creator:: Chappellaz, J., Stowasser, C., Blunier, T., Baslev-Clausen, D., Brook, Edward J., Dallmayr, R., Fain, X., Lee, J. E., Mitchell, L. E., Pascual, O., Romanini, D., Rosen, J., and Schuepbach, S.
Abstract:: The Greenland NEEM (North Greenland Eemian Ice Drilling) operation in 2010 provided the first opportunity to combine trace-gas measurements by laser spectroscopic instruments and continuous-flow analysis along a freshly drilled ice core in a field-based setting. We present the resulting atmospheric methane (CH₄) record covering the time period from 107.7...
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Full Text:: stage 3. The largest observed rate of increase takes place at the onset of D/O event #21 and reaches 2.5

Catalyst selective and regiodivergent O- to C- or N-carboxyl transfer of pyrazolyl carbonates: synthetic and computational studies

Creator:: Gould, Eoin, Walden, Daniel M., Kasten, Kevin, Johnston, Ryne C., Wu, Jiufeng, Slawin, Alexandra M., Mustard, Thomas J. L., Johnston, Brittany, Davies, Tony, Cheong, Paul Ha-Yeon, and Smith, Andrew D.
Abstract:: The regiodivergent O- to C- or N-carboxyl transfer of pyrazolyl carbonates is described, with DMAP giving preferential N-carboxylation and triazolinylidenes promoting selective C-carboxylation (both with up to >99 : 1 regioselectivity). An enantioselective O- to C-carboxyl variant using NHC catalysis is demonstrated (up to 92% ee), while mechanistic and DFT studies outline...
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Full Text:: 3 Ju ly 2 01 4. D ow nl oa de d on 2 6/ 11 /2 01 4 18 :1 3: 32 . T hi s ar

Palaeo-sea-level and palaeo-ice-sheet databases: problems, strategies, and perspectives

Creator:: Düsterhus, André, Rovere, Alessio, Carlson, Anders E., Horton, Benjamin P., Klemann, Volker, Tarasov, Lev, Barlow, Natasha L. M., Bradwell, Tom, Clark, Jorie, Dutton, Andrea, Gehrels, W. Roland, Hibbert, Fiona D., Hijma, Marc P., Khan, Nicole, Kopp, Robert E., Sivan, Dorit, and Törnqvist, Torbjörn E.
Abstract:: Sea-level and ice-sheet databases have driven numerous advances in understanding the Earth system. We describe the challenges and offer best strategies that can be adopted to build self-consistent and standardised databases of geological and geochemical information used to archive palaeo-sea-levels and palaeo-ice-sheets. There are three phases in the development of...
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Full Text:: overlap (3 in Fig. 1a) or cannot be realistically compared due to the lack of details on measurement

Evolutionary Biology for the 21st Century

Creator:: Losos, Jonathan B., Arnold, Stevan J., Bejerano, Gill, Brodie, E. D. III, Hibbett, David, Hoekstra, Hopi E., Mindell, David P., Monteiro, Antonia, Moritz, Craig, Orr, H. Allen, Petrov, Dmitri A., Renner, Susanne S., Ricklefs, Robert E., Soltis, Pamela S., and Turner, Thomas L.
Abstract:: We live in an exciting time for biology. Technological advances have made data collection easier and cheaper than we could ever have imagined just 10 years ago. We can now synthesize and analyze large data sets containing genomes, transcriptomes, proteomes, and multivariate phenotypes. At the same time, society's need for...
Resource Type:: Article
Full Text:: , United States of America, 3 Departments of Developmental Biology and Computer Science, Stanford

Roles of brca2 (fancd1) in Oocyte Nuclear Architecture, Gametogenesis, Gonad Tumors, and Genome Stability in Zebrafish

Creator:: Rodriguez-Mari, Adriana, Wilson, Catherine, Titus, Tom A., Canestro, Cristian, BreMiller, Ruth A., Yan, Yi-Lin, Nanda, Indrajit, Johnston, Adam, Kanki, John P., Gray, Erin M., He, Xinjun, Spitsbergen, Jan, Schindler, Detlev, and Postlethwait, John H.
Abstract:: Mild mutations in BRCA2 (FANCD1) cause Fanconi anemia (FA) when homozygous, while severe mutations cause common cancers including breast, ovarian, and prostate cancers when heterozygous. Here we report a zebrafish brca2 insertional mutant that shares phenotypes with human patients and identifies a novel brca2 function in oogenesis. Experiments showed that...
Resource Type:: Article
Full Text:: Institute of Human Genetics, Biocenter, University of Würzburg, Würzburg, Germany, 3 Dana Farber Cancer

Catching the Right Wave: Evaluating Wave Energy Resources and Potential Compatibility with Existing Marine and Coastal Uses

Creator:: Kim, Choong-Ki, Toft, Jodie E., Papenfus, Michael, Verutes, Gregory, Guerry, Anne D., Ruckelshaus, Marry H., Arkema, Katie K., Guannel, Gregory, Wood, Spencer A., Bernhardt, Joanna R., Tallis, Heather, Plummer, Mark L., Halpern, Benjamin S., Pinsky, Malin L., Beck, Michael W., Chan, Francis, Chan, Kai M. A., Levin, Phil S., and Polasky, Stephen
Abstract:: Many hope that ocean waves will be a source for clean, safe, reliable and affordable energy, yet wave energy conversion facilities may affect marine ecosystems through a variety of mechanisms, including competition with other human uses. We developed a decision-support tool to assist siting wave energy facilities, which allows the...
Resource Type:: Article
Full Text:: of America, 2 Ocean Science and Technology Institute, Inha University, Nam-gu, Incheon, Korea, 3

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