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WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks

Creator:

Hanumappa, Mamatha, Preece, Justin, Elser, Justin, Nemeth, Denise, Bono, Gina, Wu, Kenny, and Jaiswal, Pankaj

Abstract:

Background: Next-generation sequencing and 'omics' platforms are used extensively in plant biology research to unravel new genomes and study their interactions with abiotic and biotic agents in the growth environment. Despite the availability of a large and growing number of genomic data sets, there are only limited resources providing highly-curated...

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Article

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Hanumappa, Justin Preece, Justin Elser, Denise Nemeth, Gina Bono, Kenny Wu and Pankaj Jaiswal* Abstract
Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum

Creator:

Kimbrel, Jeffrey A., Thomas, William J., Jiang, Yuan, Creason, Allison L., Thireault, Caitlin A., Sachs, Joel L., and Chang, Jeff H.

Abstract:

Two diametric paradigms have been proposed to model the molecular co-evolution of microbial mutualists and their eukaryotic hosts. In one, mutualist and host exhibit an antagonistic arms race and each partner evolves rapidly to maximize their own fitness from the interaction at potential expense of the other. In the opposing...

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Article

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Biotechnology 126:69–77; 11Kambara K et al. (2009) Rhizobia utilize pathogen-like effector proteins during