Index Catalog // ScholarsArchive@OSU

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Creator:: Kasschau, Kristin D., Fahlgren, Noah, Chapman, Elisabeth J., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., and Carrington, James C.
Abstract:: Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class of 24-nucleotide (nt) short interfering RNAs (siRNAs), were done for wild-type Arabidopsis thaliana and silencing pathway mutants...
Resource Type:: Article
Full Text:: siRNAs Kristin D. Kasschau 1,2 , Noah Fahlgren 1,2,3 , Elisabeth J. Chapman 1,2,3 , Christopher M

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

Creator:: Sim, Sung-Chur, Van Deynze, Allen, Stoffel, Kevin, Douches, David S., Zarka, Daniel, Ganal, Martin W., Chetelat, Roger T., Hutton, Samuel F., Scott, John W., Gardner, Randolph G., Panthee, Dilip R., Mutschler, Martha, Myers, James R., and Francis, David M.
Abstract:: The effects of selection on genome variation were investigated and visualized in tomato using a high-density single nucleotide polymorphism (SNP) array. 7,720 SNPs were genotyped on a collection of 426 tomato accessions (410 inbreds and 16 hybrids) and over 97% of the markers were polymorphic in the entire collection. Principal...
Resource Type:: Article
Full Text:: (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding Sung-Chur Sim1, Allen Van

The Impact of Imitation on Vaccination Behavior in Social Contact Networks

Creator:: Mbah, Martial L. Ndeffo, Liu, Jingzhou, Bauch, Chris T., Tekel, Yonas I., Medlock, Jan, Meyers, Lauren Ancel, and Galvani, Alison P.
Abstract:: Previous game-theoretic studies of vaccination behavior typically have often assumed that populations are homogeneously mixed and that individuals are fully rational. In reality, there is heterogeneity in the number of contacts per individual, and individuals tend to imitate others who appear to have adopted successful strategies. Here, we use network-based...
Resource Type:: Article
Full Text:: Behavior in Social Contact Networks Martial L. Ndeffo Mbah1*, Jingzhou Liu1, Chris T. Bauch2, Yonas I

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Creator:: Fahlgren, Noah, Howell, Miya D., Kasschau, Kristin D., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., Law, Theresa F., Grant, Sarah R., Dangl, Jeffrey L., and Carrington, James C.
Abstract:: In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosperms and the mosses, whereas many others are more recently evolved. Here, we use deep...
Resource Type:: Article
Full Text:: . Law3, Sarah R. Grant3, Jeffery L. Dangl3, James C. Carrington1* 1 Center for Genome Research and

Short-term responses of native bees to livestock and implications for managing ecosystem services in grasslands

Creator:: Kimoto, Chiho, DeBano, Sandra J., Thorp, Robbin W., Taylor, Robert V., Schmalz, Heidi, DelCurto, Timothy, Johnson, Tracey, Kennedy, Patricia L., and Rao, Sujaya
Abstract:: Rangelands are significant providers of ecosystem services in agroecosystems world‐wide. Yet few studies have investigated how different intensities of livestock grazing impact one important provider of these ecosystem services—native bees. We conducted the first large‐scale manipulative study on the effect of a gradient of livestock grazing intensities on native bees...
Resource Type:: Article
Full Text:: growth. Chapman and Hall, London, UK. Damiran, D., T. DelCurto, E. Darambazar, P. L. Kennedy, R. V

Factors affecting female space use in ten populations of prairie chickens

Creator:: Winder, Virginia L., Carrlson, Kaylan M., Gregory, Andrew J., Hagen, Christian A., Haukos, David A., Kesler, Dylan C., Larsson, Lena C., Matthews, Ty W., McNew, Lance B., Patten, Michael A., Pitman, Jim C., Powell, Larkin A., Smith, Jennifer A., Thompson, Tom, Wolfe, Donald H., and Sandercock, Brett K.
Abstract:: Conservation of wildlife depends on an understanding of the interactions between animal movements and key landscape factors. Habitat requirements of wide-ranging species often vary spatially, but quantitative assessment of variation among replicated studies at multiple sites is rare. We investigated patterns of space use for 10 populations of two closely...
Resource Type:: Article
Full Text:: . L., Carrlson, K. M., Gregory, A. J., Hagen, C. A., Haukos, D. A., Kesler, D. C., ... & Sandercock

Critically low abundance and limits to human-related mortality for the Maui's dolphin

Creator:: Hamner, Rebecca M., Wade, Paul, Oremus, Marc, Stanley, Martin, Brown, Phillip, Constantine, Rochelle, and Baker, C. Scott
Abstract:: The New Zealand endemic Maui’s dolphin Cephalorhynchus hectori maui is characterized by several life history traits thought to be important predictors of extinction risk in marine mammals, including a slow rate of reproduction, small geographic range, small group size, and coastal distribution. We continued the genetic monitoring of the remnant...
Resource Type:: Article
Full Text:: 2010 and 2011, we estimated abundance with the Chapman-corrected Lincoln-Petersen estimator (Chapman

A potential implicit particle method for high-dimensional systems

Creator:: Weir, B., Miller, R. N., and Spitz, Y. H.
Abstract:: This paper presents a particle method designed for high-dimensional state estimation. Instead of weighing random forecasts by their distance to given observations, the method samples an ensemble of particles around an optimal solution based on the observations (i.e., it is implicit). It differs from other implicit methods because it includes...
Resource Type:: Article
Full Text:: . Expectation, τ (i) j,n = αj,nN ( x (i) m(k);µj,n,Bj,n ) ∑ l αl,nN ( x (i) m(k);µl,n,Bl,n ) , Tj,n = ∑ i

Effects of Cu/Zn Superoxide Dismutase (sod1) Genotype and Genetic Background on Growth, Reproduction and Defense in Biomphalaria glabrata

Creator:: Bonner, Kaitlin M., Bayne, Christopher J., Larson, Maureen K., and Blouin, Michael S.
Abstract:: Resistance of the snail Biomphalaria glabrata to the trematode Schistosoma mansoni is correlated with allelic variation at copper-zinc superoxide dismutase (sod1). We tested whether there is a fitness cost associated with carrying the most resistant allele in three outbred laboratory populations of snails. These three populations were derived from the...
Resource Type:: Article
Full Text:: ) were reared in 2 L of ASW in aerated, lidded 1- gallon, clear plastic boxes (IRIS, USA). The egg

A Prediction Algorithm for Coexistence Problem in Multiple-WBAN Environment

Creator:: Jin, Zilong, Han, Yoonjeong, Cho, Jinsung, and Lee, Ben
Abstract:: The coexistence problem occurs when a single wireless body area network (WBAN) is located within a multiple-WBAN environment. This causes WBANs to suffer from severe channel interference that degrades the communication performance of each WBAN. Since a WBAN handles vital signs that affect human life, the detection or prediction of...
Resource Type:: Article
Full Text:: Communications (PIMRC ’11), pp. 1083–1087, Toronto, Canada, September 2011. [4] S. C. Liu, G. L. Xing, H. W

ScholarsArchive@OSU

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

The Impact of Imitation on Vaccination Behavior in Social Contact Networks

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Short-term responses of native bees to livestock and implications for managing ecosystem services in grasslands

Factors affecting female space use in ten populations of prairie chickens

Critically low abundance and limits to human-related mortality for the Maui's dolphin

A potential implicit particle method for high-dimensional systems

Effects of Cu/Zn Superoxide Dismutase (sod1) Genotype and Genetic Background on Growth, Reproduction and Defense in Biomphalaria glabrata

A Prediction Algorithm for Coexistence Problem in Multiple-WBAN Environment

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