Index Catalog // ScholarsArchive@OSU

Technical note: Time lag correction of aquatic eddy covariance data measured in the presence of waves

Creator:: Berg, P., Reimers, Clare E., Rosman, J. H., Huettel, M., Delgard, M. L., Reidenbach, M. A., and Özkan-Haller, H. Tuba
Abstract:: Extracting benthic oxygen fluxes from eddy covariance time series measured in the presence of surface gravity waves requires careful consideration of the temporal alignment of the vertical velocity and the oxygen concentration. Using a model based on linear wave theory and measured eddy covariance data, we show that a substantial...
Resource Type:: Article
Full Text:: Technical note: Time lag correction of aquatic eddy

Technical note: Time lag correction of aquatic eddy covariance data measured in the presence of waves

Creator:: Berg, P., Reimers, Clare E., Rosman, J. H., Huettel, M., Delgard, M. L., Reidenbach, M. A., and Özkan-Haller, H. Tuba
Abstract:: Extracting benthic oxygen fluxes from eddy covariance time series measured in the presence of surface gravity waves requires careful consideration of the temporal alignment of the vertical velocity and the oxygen concentration. Using a model based on linear wave theory and measured eddy covariance data, we show that a substantial...
Resource Type:: Article
Full Text:: Technical note: Time lag correction of aquatic eddy

Evolutionary Biology for the 21st Century

Creator:: Losos, Jonathan B., Arnold, Stevan J., Bejerano, Gill, Brodie, E. D. III, Hibbett, David, Hoekstra, Hopi E., Mindell, David P., Monteiro, Antonia, Moritz, Craig, Orr, H. Allen, Petrov, Dmitri A., Renner, Susanne S., Ricklefs, Robert E., Soltis, Pamela S., and Turner, Thomas L.
Abstract:: We live in an exciting time for biology. Technological advances have made data collection easier and cheaper than we could ever have imagined just 10 years ago. We can now synthesize and analyze large data sets containing genomes, transcriptomes, proteomes, and multivariate phenotypes. At the same time, society's need for...
Resource Type:: Article
Full Text:: , California, United States of America, 13 Department of Biology, University of Munich, Munich, Germany, 14

The Level of Residual Dispersion Variation and the Power of Differential Expression Tests for RNA-Seq Data

Creator:: Mi, Gu and Di, Yanming
Abstract:: RNA-Sequencing (RNA-Seq) has been widely adopted for quantifying gene expression changes in comparative transcriptome analysis. For detecting differentially expressed genes, a variety of statistical methods based on the negative binomial (NB) distribution have been proposed. These methods differ in the ways they handle the NB nuisance parameters (i.e., the dispersion...
Resource Type:: Article
Full Text:: http://cdss.library.oregonstate.edu/sa-termsofuse RESEARCH ARTICLE The Level of Residual

Five new species and three new subspecies of Erebidae and Noctuidae (Insecta, Lepidoptera) from Northwestern North America, with notes on Chytolita Grote (Erebidae) and Hydraecia Guenée (Noctuidae)

Creator:: Crabo, Lars G., Davis, Melanie, Hammond, Paul, Mustelin, Tomas, and Shepard, Jon
Abstract:: Several taxonomic issues in the moth families Erebidae and Noctuidae are addressed for Northwestern North America. Drasteria parallela Crabo & Mustelin and Cycnia oregonensis tristis Crabo in the Erebidae and Eudryas brevipennis bonneville Shepard & Crabo, Resapamea diluvius Crabo, Resapamea angelika Crabo, Resapamea mammuthus Crabo, Fishia nigrescens Hammond & Crabo,...
Resource Type:: Article
Full Text:: North America, with notes on Chytolita Grote (Erebidae) and Hydraecia Guenée (Noctuidae) Lars G

Comparison of fixatives and fixation time for PCR detection of Mycobacterium in zebrafish Danio rerio

Creator:: Peterson, Tracy S., Kent, Michael L., Ferguson, Jayde A., Watral, Virginia G., and Whipps, Christopher M.
Abstract:: Mycobacteriosis is a common disease of laboratory zebrafish Danio rerio. Different infection patterns occur in zebrafish depending on mycobacterial species. Mycobacterium marinum and M. haemophilum produce virulent infections associated with high mortality, whereas M. chelonae is more widespread and is not associated with high mortality. Identification of mycobacterial infections to...
Resource Type:: Article
Full Text:: are now a widely used vertebrate animal model in biomedical research (Lele & Krone 1996, Dooley & Zon

Long-term individual sighting history database: an effective tool to monitor satellite tag effects on cetaceans

Creator:: Gendron, D., Serrano, I. Martinez, de la Cruz, A. Ugalde, Calambokidis, J., and Mate, B.
Abstract:: During the last 3 decades, tagging technology has been used to study different aspects of cetacean ecology. Tags implanted in animal’s blubber, muscle and surrounding tissue have produced successful results, providing information on long-term movements. However, apart from the reports of ‘divots’ (depressions) and swelling at the tag sites in...
Resource Type:: Article
Full Text:: n26:235 ENDANGERED SPECIES RESEARCH Endang Species Res Vol

Escaped farmed salmon and trout in Chile: incidence, impacts, and the need for an ecosystem view

Creator:: Sepúlveda, Maritza, Arismendi, Ivan, Soto, Doris, Jara, Fernando, and Farias, Francisca
Abstract:: The exponential growth of the salmonid farming industry during the last 3 decades has created conditions for massive escapes of these exotic species into natural environments in southern Chile. Here, we review and update information about salmonid escapes from 1993 to 2012 and examine their potential environmental, social, and economic...
Resource Type:: Article
Full Text:: Inter-Research Accepted Manuscript http://cdss.library.oregonstate.edu/sa-termsofuse 1

Nested scales of spatial heterogeneity in juvenile walleye pollock Theragra chalcogramma in the southeastern Bering Sea

Creator:: Benoit-Bird, Kelly J., McIntosh, Neal E., and Heppell, Scott A.
Abstract:: We sought to characterize the distribution of juvenile walleye pollock Theragra chalcogramma in an area of intense predator-prey interactions and to describe habitat features that lead to their observed distributions. The distribution of juvenile walleye pollock around the Pribilof Islands in the southeastern Bering Sea in 2008 and 2009 was...
Resource Type:: Article

Critically low abundance and limits to human-related mortality for the Maui's dolphin

Creator:: Hamner, Rebecca M., Wade, Paul, Oremus, Marc, Stanley, Martin, Brown, Phillip, Constantine, Rochelle, and Baker, C. Scott
Abstract:: The New Zealand endemic Maui’s dolphin Cephalorhynchus hectori maui is characterized by several life history traits thought to be important predictors of extinction risk in marine mammals, including a slow rate of reproduction, small geographic range, small group size, and coastal distribution. We continued the genetic monitoring of the remnant...
Resource Type:: Article
Full Text:: -Research · www.int-res.com *Corresponding author: rebecca.hamner@oregonstate.edu NOTE Critically low

ScholarsArchive@OSU

Technical note: Time lag correction of aquatic eddy covariance data measured in the presence of waves

Technical note: Time lag correction of aquatic eddy covariance data measured in the presence of waves

Evolutionary Biology for the 21st Century

The Level of Residual Dispersion Variation and the Power of Differential Expression Tests for RNA-Seq Data

Five new species and three new subspecies of Erebidae and Noctuidae (Insecta, Lepidoptera) from Northwestern North America, with notes on Chytolita Grote (Erebidae) and Hydraecia Guenée (Noctuidae)

Comparison of fixatives and fixation time for PCR detection of Mycobacterium in zebrafish Danio rerio

Long-term individual sighting history database: an effective tool to monitor satellite tag effects on cetaceans

Escaped farmed salmon and trout in Chile: incidence, impacts, and the need for an ecosystem view

Nested scales of spatial heterogeneity in juvenile walleye pollock Theragra chalcogramma in the southeastern Bering Sea

Critically low abundance and limits to human-related mortality for the Maui's dolphin

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